Wall clock time and date at job start Tue Mar 31 2020 13:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86805 * 120.00153 * 2 1 4 4 H 1.48506 * 109.46810 * 270.00136 * 3 2 1 5 5 H 1.48503 * 109.46954 * 29.99514 * 3 2 1 6 6 H 1.48501 * 109.47286 * 149.99934 * 3 2 1 7 7 C 1.38659 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99696 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00084 * 180.02562 * 7 2 1 10 10 C 1.35750 * 116.99708 * 185.05464 * 9 7 2 11 11 C 1.38880 * 120.07217 * 354.46024 * 10 9 7 12 12 C 1.38098 * 119.93233 * 179.97438 * 11 10 9 13 13 C 1.38299 * 120.06805 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.93112 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47407 * 89.99868 * 14 13 12 16 16 O 1.20832 * 119.99470 * 0.02562 * 15 14 13 17 17 O 1.34224 * 120.00291 * 180.02562 * 15 14 13 18 18 C 1.45202 * 117.00092 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47168 * 180.02562 * 18 17 15 20 20 C 1.53003 * 109.47420 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.82255 * 54.42784 * 20 19 18 22 22 C 1.54381 * 109.90730 * 175.36837 * 20 19 18 23 23 C 1.55303 * 102.25096 * 140.91066 * 22 20 19 24 24 C 1.54949 * 100.94452 * 325.86441 * 23 22 20 25 25 O 1.43246 * 109.82388 * 293.54894 * 20 19 18 26 26 C 1.38300 * 120.13812 * 0.27617 * 13 12 11 27 27 C 1.38097 * 120.07115 * 359.49128 * 26 13 12 28 28 H 0.96997 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.03252 * 0.02562 * 11 10 9 30 30 H 1.08001 * 119.96590 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.47119 * 330.00161 * 14 13 12 32 32 H 1.08999 * 109.46959 * 210.00014 * 14 13 12 33 33 H 1.09004 * 109.46967 * 59.99929 * 18 17 15 34 34 H 1.09000 * 109.47321 * 299.99974 * 18 17 15 35 35 H 1.09004 * 109.47243 * 60.00088 * 19 18 17 36 36 H 1.09002 * 109.47492 * 300.00171 * 19 18 17 37 37 H 1.08992 * 110.84358 * 259.09995 * 22 20 19 38 38 H 1.09002 * 110.84705 * 22.52336 * 22 20 19 39 39 H 1.09005 * 111.12861 * 83.78300 * 23 22 20 40 40 H 1.09000 * 111.12465 * 207.90281 * 23 22 20 41 41 H 1.08998 * 110.31386 * 277.53010 * 24 23 22 42 42 H 1.09002 * 110.30651 * 155.35610 * 24 23 22 43 43 H 1.08000 * 119.96252 * 179.72208 * 26 13 12 44 44 H 1.08000 * 120.03821 * 180.25714 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0464 -1.4002 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 0.0000 10 6 3.9735 -2.4055 -0.1072 11 6 3.2235 -3.5744 -0.0951 12 6 3.8535 -4.7984 -0.2048 13 6 5.2296 -4.8610 -0.3271 14 6 5.9137 -6.1984 -0.4472 15 6 6.0191 -6.5801 -1.9013 16 8 5.5836 -5.8415 -2.7527 17 8 6.5965 -7.7403 -2.2505 18 6 6.6636 -8.0425 -3.6692 19 6 7.3491 -9.3954 -3.8705 20 6 7.4205 -9.7136 -5.3654 21 1 7.9042 -8.8930 -5.8953 22 6 8.2127 -11.0199 -5.5876 23 6 7.4104 -11.7018 -6.7292 24 6 5.9678 -11.2552 -6.3823 25 8 6.1000 -9.9148 -5.8828 26 6 5.9797 -3.6991 -0.3342 27 6 5.3553 -2.4718 -0.2297 28 1 -0.4850 0.8400 -0.0004 29 1 2.1488 -3.5260 -0.0009 30 1 3.2707 -5.7077 -0.1960 31 1 5.3338 -6.9523 0.0851 32 1 6.9123 -6.1358 -0.0148 33 1 7.2340 -7.2663 -4.1794 34 1 5.6550 -8.0819 -4.0804 35 1 6.7784 -10.1714 -3.3604 36 1 8.3578 -9.3565 -3.4592 37 1 9.2331 -10.8054 -5.9050 38 1 8.2093 -11.6336 -4.6868 39 1 7.7153 -11.3224 -7.7046 40 1 7.5081 -12.7864 -6.6843 41 1 5.5447 -11.9045 -5.6159 42 1 5.3433 -11.2661 -7.2757 43 1 7.0545 -3.7515 -0.4254 44 1 5.9412 -1.5646 -0.2395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177943599.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:19 Heat of formation + Delta-G solvation = -163.770539 kcal Electronic energy + Delta-G solvation = -25427.243284 eV Core-core repulsion = 21502.358706 eV Total energy + Delta-G solvation = -3924.884579 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.60837 -40.82041 -40.43126 -38.62169 -37.48348 -34.55104 -34.05380 -33.15048 -32.89982 -31.84769 -29.31042 -28.33426 -26.89238 -24.67709 -23.75103 -22.97142 -22.38772 -21.85767 -21.39168 -19.84445 -19.13538 -18.66112 -18.13461 -17.49374 -17.31103 -16.86684 -16.65607 -16.23301 -15.79851 -15.68672 -15.45366 -15.24315 -15.13487 -14.59728 -14.40460 -14.31692 -14.15724 -14.09836 -13.98530 -13.08216 -13.02430 -12.82734 -12.69206 -12.63544 -12.58477 -12.44749 -12.39085 -12.10262 -12.02832 -11.94003 -11.70673 -11.49114 -11.43168 -11.30661 -10.91523 -10.53478 -9.82550 -9.05226 -8.51763 -6.24716 0.51342 0.55421 1.26158 1.29842 1.34343 1.50819 1.74911 2.26885 2.75469 2.88170 3.02109 3.15159 3.57358 3.64795 3.77564 3.91826 3.97109 3.99987 4.04031 4.11057 4.14888 4.24027 4.34976 4.40988 4.43489 4.53558 4.64690 4.66940 4.77111 4.80065 4.81009 4.88764 4.93692 4.94741 5.04420 5.09363 5.21468 5.29358 5.33513 5.48658 5.53150 5.68410 5.76705 5.88629 6.08354 6.21215 6.81682 6.82134 7.55651 8.59863 Molecular weight = 320.15amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.001950 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.503614 B =14353.850329 C =14814.124658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.261 1.261 7 C -0.401 4.401 8 H 0.080 0.920 9 O -0.244 6.244 10 C 0.122 3.878 11 C -0.240 4.240 12 C -0.062 4.062 13 C -0.151 4.151 14 C -0.049 4.049 15 C 0.459 3.541 16 O -0.540 6.540 17 O -0.356 6.356 18 C 0.066 3.934 19 C -0.117 4.117 20 C 0.074 3.926 21 H 0.082 0.918 22 C -0.143 4.143 23 C -0.152 4.152 24 C 0.038 3.962 25 O -0.410 6.410 26 C -0.054 4.054 27 C -0.193 4.193 28 H 0.285 0.715 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.158 0.842 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.366 -25.718 -8.087 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.478 4.478 8 H 0.097 0.903 9 O -0.151 6.151 10 C 0.073 3.927 11 C -0.259 4.259 12 C -0.080 4.080 13 C -0.152 4.152 14 C -0.086 4.086 15 C 0.304 3.696 16 O -0.429 6.429 17 O -0.273 6.273 18 C -0.008 4.008 19 C -0.155 4.155 20 C 0.017 3.983 21 H 0.100 0.900 22 C -0.181 4.181 23 C -0.189 4.189 24 C -0.038 4.038 25 O -0.331 6.331 26 C -0.072 4.072 27 C -0.212 4.212 28 H 0.095 0.905 29 H 0.126 0.874 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.176 0.824 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.979 -25.034 -8.349 33.713 hybrid contribution -0.851 0.846 -0.338 1.247 sum 20.128 -24.188 -8.688 32.644 Atomic orbital electron populations 1.69730 1.06911 1.29648 1.50015 1.25322 0.95944 1.02265 0.95453 0.85189 0.78851 0.77247 0.79224 1.19281 1.18920 1.18544 1.20712 0.78113 0.96142 1.52785 0.90298 1.83511 1.21248 1.27420 1.82935 1.19718 0.93331 0.85073 0.94601 1.21258 1.00193 0.93268 1.11193 1.20943 0.94659 0.96341 0.96012 1.19258 0.92973 0.94760 1.08176 1.20267 1.05770 0.94725 0.87818 1.24432 0.73273 0.78280 0.93654 1.90728 1.45749 1.52510 1.53961 1.86462 1.72563 1.38862 1.29374 1.23083 1.01371 0.98570 0.77740 1.21959 1.02702 0.94276 0.96540 1.22852 0.83422 0.99478 0.92594 0.89984 1.23164 1.00369 0.94571 0.99970 1.23272 0.93675 1.02665 0.99304 1.23592 0.98332 0.82858 0.99026 1.88470 1.32294 1.31938 1.80368 1.20987 1.00576 0.90072 0.95573 1.20525 0.90533 0.99892 1.10284 0.90523 0.87432 0.84771 0.84529 0.83390 0.91748 0.92964 0.90184 0.87609 0.88161 0.89097 0.90123 0.87983 0.91721 0.89479 0.82445 0.85066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.47 13.96 21.61 0.30 -56.17 16 2 C 0.01 0.51 5.49 84.84 0.47 0.97 16 3 Si 0.97 46.68 28.62 68.60 1.96 48.64 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.40 -24.51 9.95 67.92 0.68 -23.83 16 8 H 0.08 5.06 5.44 -2.91 -0.02 5.05 16 9 O -0.24 -13.76 8.59 -22.76 -0.20 -13.95 16 10 C 0.12 5.98 6.65 22.58 0.15 6.13 16 11 C -0.24 -11.15 9.17 22.39 0.21 -10.95 16 12 C -0.06 -2.25 9.69 22.25 0.22 -2.04 16 13 C -0.15 -4.63 4.38 -19.84 -0.09 -4.72 16 14 C -0.05 -1.00 5.94 29.10 0.17 -0.83 16 15 C 0.46 12.14 7.95 71.24 0.57 12.70 16 16 O -0.54 -19.61 15.78 21.95 0.35 -19.26 16 17 O -0.36 -7.94 10.22 -51.36 -0.52 -8.46 16 18 C 0.07 1.41 5.38 71.98 0.39 1.80 16 19 C -0.12 -1.60 5.17 30.59 0.16 -1.45 16 20 C 0.07 0.98 3.51 31.06 0.11 1.09 16 21 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 22 C -0.14 -1.01 6.55 31.85 0.21 -0.80 16 23 C -0.15 -1.08 7.16 32.05 0.23 -0.85 16 24 C 0.04 0.46 7.78 72.65 0.57 1.03 16 25 O -0.41 -7.84 10.63 -148.98 -1.58 -9.42 16 26 C -0.05 -1.72 9.69 22.25 0.22 -1.50 16 27 C -0.19 -7.69 9.99 22.39 0.22 -7.47 16 28 H 0.29 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.11 5.48 5.64 -2.91 -0.02 5.46 16 30 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.14 2.08 8.08 -2.39 -0.02 2.06 16 32 H 0.15 1.90 8.08 -2.39 -0.02 1.89 16 33 H 0.06 1.40 8.13 -2.38 -0.02 1.38 16 34 H 0.05 1.37 7.87 -2.39 -0.02 1.35 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.09 0.48 7.85 -2.39 -0.02 0.46 16 39 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 44 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -78.32 372.28 5.76 -72.56 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.00 Total: 16.76 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 4.46 Total: -30.70 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.30 Total: -56.17 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -1.96 Total: -51.10 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.96 Total: 48.64 kcal Total: -78.32 5.76 -72.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177943599.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.212 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds