Wall clock time and date at job start Tue Mar 31 2020 12:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47529 * 2 1 4 4 C 1.34775 * 120.00266 * 249.73983 * 3 2 1 5 5 O 1.21555 * 120.00537 * 185.20934 * 4 3 2 6 6 C 1.47849 * 119.99912 * 5.21263 * 4 3 2 7 7 C 1.39939 * 120.02488 * 27.67135 * 6 4 3 8 8 C 1.38329 * 120.35333 * 179.73722 * 7 6 4 9 9 C 1.37755 * 120.41573 * 0.51834 * 8 7 6 10 10 C 1.40760 * 120.04171 * 359.76280 * 9 8 7 11 11 C 1.41438 * 120.17424 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00150 * 334.16167 * 11 10 9 13 13 C 1.39933 * 119.99689 * 154.16296 * 11 10 9 14 14 N 1.30826 * 120.00137 * 6.55990 * 13 11 10 15 15 Si 1.86807 * 119.99889 * 186.55782 * 13 11 10 16 16 H 1.48492 * 109.46734 * 60.00146 * 15 13 11 17 17 H 1.48499 * 109.46856 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47093 * 300.00059 * 15 13 11 19 19 C 1.39014 * 120.02944 * 207.94553 * 6 4 3 20 20 C 1.39457 * 120.00300 * 69.73883 * 3 2 1 21 21 C 1.39120 * 119.92652 * 186.16703 * 20 3 2 22 22 C 1.37688 * 120.08335 * 180.02562 * 21 20 3 23 23 C 1.39791 * 119.91579 * 359.97306 * 22 21 20 24 24 C 1.43196 * 120.07398 * 180.02562 * 23 22 21 25 25 N 7.57343 * 87.79082 * 46.30036 * 2 1 3 26 26 C 1.39778 * 119.84326 * 0.27692 * 23 22 21 27 27 C 1.37685 * 119.92158 * 359.48868 * 26 23 22 28 28 H 1.09001 * 109.46897 * 299.99786 * 1 2 3 29 29 H 1.08996 * 109.47516 * 59.99606 * 1 2 3 30 30 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47172 * 239.99800 * 2 1 3 32 32 H 1.08996 * 109.47516 * 120.00394 * 2 1 3 33 33 H 1.07994 * 119.82315 * 0.02562 * 7 6 4 34 34 H 1.07999 * 119.79400 * 180.23948 * 8 7 6 35 35 H 1.07993 * 119.97982 * 179.73792 * 9 8 7 36 36 H 0.97002 * 120.00273 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.19874 * 359.97438 * 19 6 4 38 38 H 1.07996 * 119.96197 * 359.97438 * 21 20 3 39 39 H 1.07990 * 120.04780 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.03474 * 179.72178 * 26 23 22 41 41 H 1.07998 * 119.96107 * 180.20979 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.6241 1.8817 -1.0949 5 8 3.1133 2.9940 -1.0639 6 6 2.6934 1.0780 -2.3340 7 6 1.7093 0.1203 -2.6034 8 6 1.7645 -0.6316 -3.7631 9 6 2.7941 -0.4542 -4.6609 10 6 3.7964 0.5002 -4.4042 11 6 4.8551 0.6843 -5.3238 12 1 5.1514 -0.1246 -5.9751 13 6 5.5185 1.9146 -5.3897 14 7 5.2484 2.8511 -4.5170 15 14 6.7899 2.2199 -6.7239 16 1 6.1502 2.0853 -8.0572 17 1 7.3436 3.5898 -6.5759 18 1 7.8870 1.2269 -6.5987 19 6 3.7394 1.2691 -3.2295 20 6 1.8565 2.1780 1.1330 21 6 2.2033 3.5246 1.0896 22 6 2.0453 4.3142 2.2065 23 6 1.5354 3.7613 3.3848 24 6 1.3692 4.5795 4.5481 25 7 1.2380 5.2284 5.4713 26 6 1.1930 2.4068 3.4262 27 6 1.3491 1.6243 2.3041 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8998 -0.0293 -1.9043 34 1 0.9981 -1.3656 -3.9638 35 1 2.8326 -1.0481 -5.5621 36 1 5.7086 3.7038 -4.5624 37 1 4.5033 2.0042 -3.0237 38 1 2.5975 3.9510 0.1791 39 1 2.3150 5.3594 2.1724 40 1 0.8029 1.9753 4.3363 41 1 1.0815 0.5784 2.3344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178946148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:35 Heat of formation + Delta-G solvation = 80.284001 kcal Electronic energy + Delta-G solvation = -25547.987157 eV Core-core repulsion = 21973.287248 eV Total energy + Delta-G solvation = -3574.699909 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.96084 -38.78075 -37.30265 -36.60826 -35.86505 -33.87197 -31.85192 -31.07141 -30.35138 -29.65055 -29.18125 -25.64237 -24.28593 -23.79082 -22.68371 -21.55108 -21.03876 -19.41408 -18.98046 -17.76329 -17.11876 -16.27378 -15.95610 -15.30285 -15.23853 -14.78628 -14.46761 -14.31416 -13.97172 -13.74011 -13.57261 -13.25460 -13.20854 -12.88928 -12.74962 -12.65906 -12.61573 -12.39244 -12.25757 -11.81292 -11.74334 -11.36582 -11.21423 -11.18246 -10.87131 -10.79258 -10.34657 -10.13915 -9.98964 -9.84833 -9.41801 -9.07179 -8.87000 -7.95753 -7.69489 -7.55059 -6.70920 -4.60114 0.77139 1.36173 2.01584 2.65684 2.70534 2.91263 2.97889 3.00712 3.02521 3.06746 3.50411 3.83142 3.94407 3.95195 4.49623 4.66535 4.81196 4.93944 5.09233 5.16020 5.27537 5.34245 5.42254 5.51597 5.56658 5.73471 5.84413 5.96264 5.98215 6.09897 6.10523 6.24125 6.28912 6.41180 6.51330 6.57080 6.85082 6.88875 7.13408 7.16361 7.26807 7.41069 7.48246 7.57700 7.70389 7.89714 8.07561 8.41776 8.50287 8.70335 8.75954 10.06642 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.003304 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.839908 B = 8471.382294 C = 9948.363567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 N -0.549 5.549 4 C 0.567 3.433 5 O -0.506 6.506 6 C -0.134 4.134 7 C -0.239 4.239 8 C -0.103 4.103 9 C -0.203 4.203 10 C 0.087 3.913 11 C -0.448 4.448 12 H 0.080 0.920 13 C 0.066 3.934 14 N -0.793 5.793 15 Si 0.921 3.079 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.101 4.101 20 C 0.205 3.795 21 C -0.177 4.177 22 C -0.041 4.041 23 C -0.082 4.082 24 C 0.267 3.733 25 N -0.441 5.441 26 C -0.043 4.043 27 C -0.175 4.175 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.284 0.716 37 H 0.166 0.834 38 H 0.191 0.809 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -4.753 7.784 11.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.058 4.058 3 N -0.269 5.269 4 C 0.362 3.638 5 O -0.383 6.383 6 C -0.138 4.138 7 C -0.258 4.258 8 C -0.121 4.121 9 C -0.222 4.222 10 C 0.085 3.915 11 C -0.478 4.478 12 H 0.098 0.902 13 C -0.151 4.151 14 N -0.418 5.418 15 Si 0.745 3.255 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.121 4.121 20 C 0.106 3.894 21 C -0.196 4.196 22 C -0.063 4.063 23 C -0.087 4.087 24 C -0.047 4.047 25 N -0.117 5.117 26 C -0.064 4.064 27 C -0.196 4.196 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.156 0.844 32 H 0.091 0.909 33 H 0.137 0.863 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.183 0.817 38 H 0.207 0.793 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.111 -2.969 9.161 11.406 hybrid contribution 0.366 -0.174 -0.841 0.933 sum -5.746 -3.144 8.320 10.589 Atomic orbital electron populations 1.22295 0.95314 1.02880 1.03103 1.22711 0.95101 0.81562 1.06442 1.45686 1.55702 1.13492 1.12009 1.19267 0.75340 0.86207 0.82987 1.90384 1.44975 1.20003 1.82926 1.19410 1.00408 0.99615 0.94321 1.21167 1.02173 1.01826 1.00627 1.20476 0.97884 0.99134 0.94591 1.21218 0.96583 1.04604 0.99839 1.17687 0.91909 0.90720 0.91228 1.19612 1.13207 0.98018 1.16953 0.90230 1.26025 0.96738 0.95721 0.96662 1.69554 1.36152 1.05272 1.30865 0.86150 0.80148 0.78282 0.80918 1.18924 1.20146 1.18894 1.22584 0.97853 1.00406 0.91278 1.18338 0.93768 0.90780 0.86512 1.22745 1.02687 0.92076 1.02131 1.21177 0.94467 0.99965 0.90643 1.16009 1.10672 0.92465 0.89528 1.25807 0.92966 0.93136 0.92834 1.81218 1.10189 1.09305 1.11036 1.20801 0.96365 0.91322 0.97928 1.20750 1.06521 1.00680 0.91609 0.91845 0.91256 0.90876 0.84446 0.90881 0.86292 0.88706 0.88554 0.90386 0.81701 0.79292 0.85085 0.85190 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.92 37.15 0.33 -1.42 16 2 C 0.06 0.75 4.94 -4.05 -0.02 0.73 16 3 N -0.55 -8.38 2.77 -114.50 -0.32 -8.69 16 4 C 0.57 11.08 7.37 -12.33 -0.09 10.99 16 5 O -0.51 -11.00 13.09 5.32 0.07 -10.93 16 6 C -0.13 -2.84 5.48 -105.04 -0.58 -3.41 16 7 C -0.24 -4.40 7.41 -38.91 -0.29 -4.69 16 8 C -0.10 -1.95 10.01 -39.72 -0.40 -2.35 16 9 C -0.20 -4.39 9.78 -38.81 -0.38 -4.77 16 10 C 0.09 2.13 5.65 -106.87 -0.60 1.53 16 11 C -0.45 -11.01 9.09 -37.73 -0.34 -11.35 16 12 H 0.08 1.85 7.85 -52.49 -0.41 1.43 16 13 C 0.07 1.55 5.45 -17.35 -0.09 1.46 16 14 N -0.79 -19.64 10.05 55.55 0.56 -19.08 16 15 Si 0.92 17.83 29.57 -169.99 -5.03 12.81 16 16 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 17 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 C -0.10 -2.46 8.38 -38.44 -0.32 -2.78 16 20 C 0.20 2.87 6.29 -83.73 -0.53 2.34 16 21 C -0.18 -2.61 8.97 -39.46 -0.35 -2.96 16 22 C -0.04 -0.51 9.75 -39.20 -0.38 -0.89 16 23 C -0.08 -0.95 5.74 -106.82 -0.61 -1.56 16 24 C 0.27 3.38 15.33 -22.48 -0.34 3.04 16 25 N -0.44 -6.44 18.54 41.84 0.78 -5.66 16 26 C -0.04 -0.43 9.75 -39.21 -0.38 -0.82 16 27 C -0.17 -1.89 8.15 -39.45 -0.32 -2.21 16 28 H 0.06 0.58 6.28 -51.93 -0.33 0.25 16 29 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.86 4.07 -51.93 -0.21 1.65 16 32 H 0.07 0.71 7.13 -51.93 -0.37 0.34 16 33 H 0.12 1.79 3.02 -52.49 -0.16 1.63 16 34 H 0.09 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 37 H 0.17 4.37 5.15 -52.49 -0.27 4.10 16 38 H 0.19 3.29 4.61 -55.89 -0.26 3.03 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.14 1.16 5.75 -52.49 -0.30 0.86 16 LS Contribution 341.20 15.07 5.14 5.14 Total: -1.00 -27.10 341.20 -8.42 -35.52 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.91 Total: 10.03 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -5.71 Total: -19.13 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 1.02 Total: -33.44 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.10 -8.42 -35.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178946148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.804 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds