Wall clock time and date at job start Tue Mar 31 2020 12:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46493 * 109.47529 * 2 1 4 4 C 1.34775 * 120.00266 * 249.73983 * 3 2 1 5 5 O 1.21555 * 120.00537 * 185.20934 * 4 3 2 6 6 C 1.47849 * 119.99912 * 5.21263 * 4 3 2 7 7 C 1.39939 * 120.02488 * 27.67135 * 6 4 3 8 8 C 1.38329 * 120.35333 * 179.73722 * 7 6 4 9 9 C 1.37755 * 120.41573 * 0.51834 * 8 7 6 10 10 C 1.40760 * 120.04171 * 359.76280 * 9 8 7 11 11 C 1.41438 * 120.17424 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00150 * 334.16167 * 11 10 9 13 13 C 1.39933 * 119.99689 * 154.16296 * 11 10 9 14 14 N 1.30826 * 120.00137 * 6.55990 * 13 11 10 15 15 Si 1.86807 * 119.99889 * 186.55782 * 13 11 10 16 16 H 1.48492 * 109.46734 * 60.00146 * 15 13 11 17 17 H 1.48499 * 109.46856 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47093 * 300.00059 * 15 13 11 19 19 C 1.39014 * 120.02944 * 207.94553 * 6 4 3 20 20 C 1.39457 * 120.00300 * 69.73883 * 3 2 1 21 21 C 1.39120 * 119.92652 * 186.16703 * 20 3 2 22 22 C 1.37688 * 120.08335 * 180.02562 * 21 20 3 23 23 C 1.39791 * 119.91579 * 359.97306 * 22 21 20 24 24 C 1.43196 * 120.07398 * 180.02562 * 23 22 21 25 25 N 7.57343 * 87.79082 * 46.30036 * 2 1 3 26 26 C 1.39778 * 119.84326 * 0.27692 * 23 22 21 27 27 C 1.37685 * 119.92158 * 359.48868 * 26 23 22 28 28 H 1.09001 * 109.46897 * 299.99786 * 1 2 3 29 29 H 1.08996 * 109.47516 * 59.99606 * 1 2 3 30 30 H 1.08997 * 109.47534 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47172 * 239.99800 * 2 1 3 32 32 H 1.08996 * 109.47516 * 120.00394 * 2 1 3 33 33 H 1.07994 * 119.82315 * 0.02562 * 7 6 4 34 34 H 1.07999 * 119.79400 * 180.23948 * 8 7 6 35 35 H 1.07993 * 119.97982 * 179.73792 * 9 8 7 36 36 H 0.97002 * 120.00273 * 179.97438 * 14 13 11 37 37 H 1.08000 * 120.19874 * 359.97438 * 19 6 4 38 38 H 1.07996 * 119.96197 * 359.97438 * 21 20 3 39 39 H 1.07990 * 120.04780 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.03474 * 179.72178 * 26 23 22 41 41 H 1.07998 * 119.96107 * 180.20979 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.6241 1.8817 -1.0949 5 8 3.1133 2.9940 -1.0639 6 6 2.6934 1.0780 -2.3340 7 6 1.7093 0.1203 -2.6034 8 6 1.7645 -0.6316 -3.7631 9 6 2.7941 -0.4542 -4.6609 10 6 3.7964 0.5002 -4.4042 11 6 4.8551 0.6843 -5.3238 12 1 5.1514 -0.1246 -5.9751 13 6 5.5185 1.9146 -5.3897 14 7 5.2484 2.8511 -4.5170 15 14 6.7899 2.2199 -6.7239 16 1 6.1502 2.0853 -8.0572 17 1 7.3436 3.5898 -6.5759 18 1 7.8870 1.2269 -6.5987 19 6 3.7394 1.2691 -3.2295 20 6 1.8565 2.1780 1.1330 21 6 2.2033 3.5246 1.0896 22 6 2.0453 4.3142 2.2065 23 6 1.5354 3.7613 3.3848 24 6 1.3692 4.5795 4.5481 25 7 1.2380 5.2284 5.4713 26 6 1.1930 2.4068 3.4262 27 6 1.3491 1.6243 2.3041 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.8998 -0.0293 -1.9043 34 1 0.9981 -1.3656 -3.9638 35 1 2.8326 -1.0481 -5.5621 36 1 5.7086 3.7038 -4.5624 37 1 4.5033 2.0042 -3.0237 38 1 2.5975 3.9510 0.1791 39 1 2.3150 5.3594 2.1724 40 1 0.8029 1.9753 4.3363 41 1 1.0815 0.5784 2.3344 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178946148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:32 Heat of formation + Delta-G solvation = 67.796624 kcal Electronic energy + Delta-G solvation = -25548.528650 eV Core-core repulsion = 21973.287248 eV Total energy + Delta-G solvation = -3575.241402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.20577 -39.98140 -38.84863 -37.82532 -37.01401 -35.54372 -33.01744 -32.16027 -31.61075 -31.21525 -30.45282 -27.34298 -25.57316 -24.74207 -23.85675 -22.88862 -22.52884 -20.81580 -20.00140 -19.31941 -18.30877 -17.73643 -17.32462 -16.80679 -16.50778 -15.90865 -15.86134 -15.53280 -15.03582 -14.96993 -14.83119 -14.54227 -14.49190 -14.26283 -14.07109 -13.86192 -13.76174 -13.50190 -13.43323 -13.22642 -12.78733 -12.70429 -12.63458 -12.46937 -12.24111 -12.10015 -11.86463 -11.65325 -11.39609 -11.18924 -11.11596 -10.32146 -9.98579 -9.50710 -9.25441 -8.90595 -8.43067 -6.42571 -0.28982 0.41754 0.45979 1.05770 1.38824 1.48790 1.51738 1.63588 1.72548 1.81932 2.13296 2.21044 2.77961 2.93449 2.95946 3.52884 3.66695 3.90844 4.02597 4.06362 4.28766 4.30352 4.44127 4.48258 4.51059 4.60370 4.76240 4.88197 4.90867 5.03089 5.05647 5.10255 5.17720 5.19059 5.31216 5.37975 5.42868 5.45407 5.53346 5.56649 5.87647 5.95753 6.02209 6.19058 6.28063 6.33608 6.47342 6.66390 6.91654 7.00740 7.09444 8.34633 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017197 B = 0.003304 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.839908 B = 8471.382294 C = 9948.363567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.054 3.946 3 N -0.541 5.541 4 C 0.559 3.441 5 O -0.544 6.544 6 C -0.143 4.143 7 C -0.210 4.210 8 C -0.103 4.103 9 C -0.207 4.207 10 C 0.053 3.947 11 C -0.486 4.486 12 H 0.082 0.918 13 C 0.021 3.979 14 N -0.831 5.831 15 Si 0.989 3.011 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.257 1.257 19 C -0.141 4.141 20 C 0.183 3.817 21 C -0.201 4.201 22 C -0.040 4.040 23 C -0.078 4.078 24 C 0.288 3.712 25 N -0.473 5.473 26 C -0.026 4.026 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.052 0.948 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.107 0.893 36 H 0.283 0.717 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.138 0.862 40 H 0.168 0.832 41 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -7.293 9.837 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.066 4.066 3 N -0.261 5.261 4 C 0.353 3.647 5 O -0.423 6.423 6 C -0.146 4.146 7 C -0.229 4.229 8 C -0.121 4.121 9 C -0.227 4.227 10 C 0.050 3.950 11 C -0.516 4.516 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.459 5.459 15 Si 0.810 3.190 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.161 4.161 20 C 0.086 3.914 21 C -0.220 4.220 22 C -0.061 4.061 23 C -0.083 4.083 24 C -0.026 4.026 25 N -0.150 5.150 26 C -0.047 4.047 27 C -0.176 4.176 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.174 0.826 39 H 0.156 0.844 40 H 0.186 0.814 41 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -8.672 -5.545 11.249 15.248 hybrid contribution 0.958 0.534 -1.264 1.673 sum -7.714 -5.012 9.985 13.576 Atomic orbital electron populations 1.22297 0.93030 1.04886 1.02960 1.22952 0.96866 0.79586 1.07181 1.45592 1.54697 1.14705 1.11075 1.19136 0.75993 0.85673 0.83934 1.90418 1.46680 1.21452 1.83773 1.19689 1.00060 1.00165 0.94710 1.21719 1.01468 0.99107 1.00598 1.20963 0.97806 0.99608 0.93693 1.21499 0.96618 1.03653 1.00895 1.18029 0.93256 0.92121 0.91557 1.19872 1.14788 0.98826 1.18105 0.90025 1.26884 0.98478 0.95203 0.98554 1.69742 1.37733 1.05655 1.32738 0.85134 0.77678 0.78129 0.78078 1.18329 1.19924 1.18129 1.22378 0.99227 1.01556 0.92978 1.18547 0.95248 0.90429 0.87191 1.22424 1.04471 0.93386 1.01765 1.21170 0.94305 1.00255 0.90388 1.16050 1.10466 0.93258 0.88490 1.25803 0.91983 0.92430 0.92400 1.81253 1.11353 1.10157 1.12215 1.21205 0.94397 0.90179 0.98940 1.21038 1.04520 1.02158 0.89911 0.90492 0.92947 0.87705 0.86270 0.87592 0.82168 0.84233 0.87441 0.90627 0.84775 0.82624 0.84385 0.81443 0.81273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.92 71.98 0.64 -1.90 16 2 C 0.05 1.09 4.94 86.38 0.43 1.51 16 3 N -0.54 -15.83 2.77 -634.43 -1.76 -17.59 16 4 C 0.56 22.61 7.37 86.79 0.64 23.25 16 5 O -0.54 -25.57 13.09 -3.89 -0.05 -25.62 16 6 C -0.14 -6.22 5.48 -20.14 -0.11 -6.33 16 7 C -0.21 -7.40 7.41 22.70 0.17 -7.23 16 8 C -0.10 -3.67 10.01 22.18 0.22 -3.45 16 9 C -0.21 -8.98 9.78 22.77 0.22 -8.76 16 10 C 0.05 2.70 5.65 -21.32 -0.12 2.58 16 11 C -0.49 -25.31 9.09 23.47 0.21 -25.10 16 12 H 0.08 4.00 7.85 -2.91 -0.02 3.97 16 13 C 0.02 1.06 5.45 85.25 0.46 1.53 16 14 N -0.83 -44.73 10.05 21.82 0.22 -44.51 16 15 Si 0.99 38.40 29.57 68.60 2.03 40.42 16 16 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 17 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 19 C -0.14 -7.34 8.38 23.01 0.19 -7.15 16 20 C 0.18 4.82 6.29 38.35 0.24 5.06 16 21 C -0.20 -6.01 8.97 22.35 0.20 -5.81 16 22 C -0.04 -0.97 9.75 22.52 0.22 -0.75 16 23 C -0.08 -1.59 5.74 -21.29 -0.12 -1.72 16 24 C 0.29 6.62 15.33 88.33 1.35 7.97 16 25 N -0.47 -12.97 18.54 19.00 0.35 -12.62 16 26 C -0.03 -0.41 9.75 22.51 0.22 -0.19 16 27 C -0.16 -2.68 8.15 22.35 0.18 -2.49 16 28 H 0.08 0.96 6.28 -2.39 -0.01 0.95 16 29 H 0.05 0.97 6.88 -2.39 -0.02 0.95 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.12 2.85 4.07 -2.38 -0.01 2.84 16 32 H 0.11 1.50 7.13 -2.39 -0.02 1.49 16 33 H 0.16 4.26 3.02 -2.91 -0.01 4.25 16 34 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 35 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.28 14.17 8.30 -92.71 -0.77 13.40 16 37 H 0.14 7.85 5.15 -2.91 -0.01 7.83 16 38 H 0.16 5.89 4.61 -56.73 -0.26 5.63 16 39 H 0.14 3.00 8.06 -2.92 -0.02 2.98 16 40 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.17 1.78 5.75 -2.91 -0.02 1.76 16 Total: -1.00 -66.84 341.20 6.90 -59.94 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.86 Total: 28.94 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 5.26 Total: -28.96 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.19 Total: -74.72 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.62 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.42 kcal Total: -66.84 6.90 -59.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178946148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.735 kcal (2) G-P(sol) polarization free energy of solvation -66.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds