Wall clock time and date at job start Tue Mar 31 2020 13:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34733 * 116.99708 * 2 1 4 4 O 1.21478 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.47599 * 119.99802 * 180.02562 * 3 2 1 6 6 C 1.39732 * 120.12196 * 359.97438 * 5 3 2 7 7 C 1.37795 * 119.87344 * 180.02562 * 6 5 3 8 8 C 1.38690 * 120.12071 * 0.02562 * 7 6 5 9 9 F 1.35103 * 119.87178 * 179.97438 * 8 7 6 10 10 C 1.38644 * 120.25305 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.93705 * 180.02562 * 10 8 7 12 12 N 1.46903 * 109.46904 * 283.33796 * 11 10 8 13 13 C 1.46902 * 111.00074 * 164.48897 * 12 11 10 14 14 C 1.50697 * 109.47170 * 190.00163 * 13 12 11 15 15 H 1.08003 * 119.99877 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00034 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99690 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99864 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47318 * 59.99849 * 18 16 14 20 20 H 1.48502 * 109.46553 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47013 * 299.99424 * 18 16 14 22 22 C 1.46903 * 111.00104 * 288.44671 * 12 11 10 23 23 C 1.53007 * 109.46879 * 295.55153 * 22 12 11 24 24 C 1.47195 * 109.47145 * 180.43804 * 23 22 12 25 25 N 7.40616 * 102.08429 * 28.68854 * 2 1 3 26 26 C 1.37837 * 120.12168 * 0.26892 * 10 8 7 27 27 H 1.09000 * 109.47079 * 60.00031 * 1 2 3 28 28 H 1.09009 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47084 * 299.99597 * 1 2 3 30 30 H 1.08000 * 120.06210 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.93564 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.47237 * 163.34493 * 11 10 8 33 33 H 1.08998 * 109.47464 * 43.34035 * 11 10 8 34 34 H 1.08997 * 109.46648 * 310.00320 * 13 12 11 35 35 H 1.08994 * 109.46929 * 70.00177 * 13 12 11 36 36 H 0.96998 * 119.99698 * 180.02562 * 17 16 14 37 37 H 1.08990 * 109.47462 * 55.54961 * 22 12 11 38 38 H 1.09000 * 109.46730 * 175.55824 * 22 12 11 39 39 H 1.09003 * 109.47097 * 300.43973 * 23 22 12 40 40 H 1.09001 * 109.46728 * 60.43670 * 23 22 12 41 41 H 1.08006 * 120.06115 * 179.70493 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5376 1.2778 -0.0006 6 6 4.3011 0.1075 -0.0006 7 6 5.6769 0.1856 -0.0006 8 6 6.3037 1.4228 0.0000 9 9 7.6529 1.4935 0.0005 10 6 5.5512 2.5872 0.0000 11 6 6.2397 3.9277 0.0000 12 7 6.7476 4.2172 1.3476 13 6 7.7260 5.3127 1.3174 14 6 8.4029 5.4188 2.6596 15 1 8.1330 4.7405 3.4556 16 6 9.3660 6.3823 2.8718 17 7 9.6943 7.2085 1.9026 18 14 10.2056 6.5133 4.5353 19 1 10.9013 5.2374 4.8406 20 1 11.1945 7.6208 4.5047 21 1 9.1889 6.7857 5.5828 22 6 5.6464 4.5202 2.2715 23 6 4.9456 5.8052 1.8256 24 6 3.8487 6.1145 2.7572 25 7 3.0025 6.3530 3.4765 26 6 4.1744 2.5210 0.0050 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8139 -0.8563 0.0003 31 1 6.2680 -0.7182 -0.0002 32 1 5.5299 4.7008 -0.2946 33 1 7.0705 3.9095 -0.7053 34 1 8.4724 5.1120 0.5489 35 1 7.2158 6.2493 1.0928 36 1 10.3721 7.8861 2.0517 37 1 4.9322 3.6969 2.2680 38 1 6.0428 4.6531 3.2781 39 1 5.6616 6.6270 1.8216 40 1 4.5425 5.6696 0.8219 41 1 3.5891 3.4287 0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182028502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:54 Heat of formation + Delta-G solvation = -70.641405 kcal Electronic energy + Delta-G solvation = -26496.881584 eV Core-core repulsion = 22484.867834 eV Total energy + Delta-G solvation = -4012.013750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.77480 -40.73598 -39.15390 -37.60277 -36.59376 -35.92537 -32.93640 -32.08305 -31.17052 -30.20674 -28.04586 -27.25009 -25.40177 -24.13609 -23.60883 -22.28733 -20.97474 -19.84425 -17.95518 -17.61333 -17.39551 -17.09121 -16.57443 -16.36239 -16.11745 -15.67126 -15.14894 -14.86528 -14.46827 -14.25190 -14.10134 -13.83645 -13.63226 -13.60975 -13.38833 -13.15507 -12.85032 -12.40624 -12.27923 -12.21024 -12.04561 -11.95249 -11.57827 -11.30954 -11.23434 -11.07215 -11.05720 -10.81530 -10.72176 -10.62424 -10.25224 -9.94515 -9.37398 -9.16922 -8.77854 -8.50187 -7.48433 -6.10312 -4.11809 0.45290 1.06683 2.30272 2.43639 3.10283 3.13804 3.31232 3.35688 3.38559 3.47288 4.17204 4.29929 4.39522 4.45055 4.56628 4.66010 4.82959 4.91632 4.92269 4.96899 5.13031 5.22695 5.26516 5.35337 5.46287 5.62391 5.64984 5.73515 5.78298 5.91842 5.99856 6.02626 6.09351 6.20000 6.24865 6.55455 6.66525 7.09072 7.14972 7.52314 7.66899 7.84821 7.95105 8.01536 8.37276 8.94826 9.53270 11.00061 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.003652 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.553670 B = 7664.789989 C = 8957.362479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.512 3.488 4 O -0.505 6.505 5 C -0.148 4.148 6 C -0.038 4.038 7 C -0.174 4.174 8 C 0.167 3.833 9 F -0.116 7.116 10 C -0.114 4.114 11 C 0.082 3.918 12 N -0.521 5.521 13 C 0.188 3.812 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.059 3.941 17 N -0.897 5.897 18 Si 0.895 3.105 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.070 3.930 23 C -0.075 4.075 24 C 0.223 3.777 25 N -0.459 5.459 26 C -0.022 4.022 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.064 0.936 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.003 0.997 36 H 0.263 0.737 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 -15.020 -7.988 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.357 3.643 4 O -0.393 6.393 5 C -0.150 4.150 6 C -0.056 4.056 7 C -0.193 4.193 8 C 0.147 3.853 9 F -0.094 7.094 10 C -0.116 4.116 11 C -0.046 4.046 12 N -0.243 5.243 13 C 0.064 3.936 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.143 4.143 17 N -0.536 5.536 18 Si 0.723 3.277 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.060 4.060 23 C -0.116 4.116 24 C -0.094 4.094 25 N -0.137 5.137 26 C -0.041 4.041 27 H 0.082 0.918 28 H 0.120 0.880 29 H 0.082 0.918 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.199 -14.623 -6.789 20.836 hybrid contribution 0.502 0.845 0.310 1.031 sum -12.697 -13.778 -6.480 19.825 Atomic orbital electron populations 1.23281 0.75947 1.03714 1.02738 1.86532 1.23577 1.32718 1.84505 1.21135 0.89052 0.81434 0.72681 1.90858 1.66751 1.35969 1.45765 1.18987 0.88961 0.94879 1.12131 1.21200 0.92691 0.98091 0.93638 1.21129 0.95151 0.96951 1.06026 1.17857 0.77627 0.93573 0.96230 1.91593 1.28245 1.97107 1.92472 1.20001 0.92897 0.95835 1.02822 1.21084 0.98738 0.90690 0.94049 1.62430 1.12285 1.44826 1.04754 1.19892 0.89217 0.85940 0.98593 1.21064 1.20787 1.15646 0.97387 0.91812 1.24935 0.96765 0.95613 0.96940 1.69924 1.32175 1.19430 1.32047 0.86603 0.79335 0.77659 0.84119 1.20126 1.21386 1.20267 1.22077 0.92250 0.92135 0.99528 1.20236 0.91991 1.04240 0.95171 1.29226 0.93721 0.92581 0.93879 1.81137 1.11967 1.09825 1.10736 1.21047 0.93035 0.97044 0.92991 0.91805 0.87981 0.91758 0.83852 0.83921 0.93220 0.89283 0.94674 0.97910 0.92766 0.91961 0.88818 0.85667 0.88390 0.83911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.58 9.81 -40.58 -0.40 -3.97 16 3 C 0.51 6.24 7.89 34.55 0.27 6.51 16 4 O -0.50 -7.47 16.13 -19.25 -0.31 -7.78 16 5 C -0.15 -1.70 5.87 -104.98 -0.62 -2.32 16 6 C -0.04 -0.36 9.61 -39.19 -0.38 -0.74 16 7 C -0.17 -1.78 10.01 -39.58 -0.40 -2.17 16 8 C 0.17 2.18 7.25 -39.26 -0.28 1.89 16 9 F -0.12 -1.77 16.71 2.25 0.04 -1.73 16 10 C -0.11 -1.50 4.70 -104.62 -0.49 -1.99 16 11 C 0.08 1.20 4.67 -4.97 -0.02 1.18 16 12 N -0.52 -9.37 4.65 -237.51 -1.10 -10.47 16 13 C 0.19 4.18 4.46 -4.98 -0.02 4.16 16 14 C -0.51 -12.97 8.52 -34.44 -0.29 -13.26 16 15 H 0.06 1.62 7.10 -52.48 -0.37 1.25 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -24.84 13.29 55.43 0.74 -24.11 16 18 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 C 0.07 1.15 4.96 -3.82 -0.02 1.14 16 23 C -0.07 -1.11 5.06 -29.52 -0.15 -1.26 16 24 C 0.22 3.70 15.43 -20.76 -0.32 3.38 16 25 N -0.46 -8.58 18.54 42.15 0.78 -7.80 16 26 C -0.02 -0.27 8.46 -39.19 -0.33 -0.60 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.14 1.04 7.61 -52.49 -0.40 0.64 16 31 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.05 0.64 5.79 -51.93 -0.30 0.34 16 33 H 0.09 1.35 7.71 -51.93 -0.40 0.95 16 34 H 0.04 0.86 7.87 -51.93 -0.41 0.45 16 35 H 0.00 0.07 5.97 -51.93 -0.31 -0.24 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 0.94 6.77 -51.93 -0.35 0.58 16 38 H 0.09 1.73 6.87 -51.93 -0.36 1.37 16 39 H 0.13 2.06 6.24 -51.93 -0.32 1.74 16 40 H 0.10 1.21 6.31 -51.93 -0.33 0.88 16 41 H 0.14 1.71 7.60 -52.48 -0.40 1.31 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -30.75 359.54 -6.72 -37.47 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.78 Total: -1.52 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.08 Total: -1.28 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.41 Total: -42.38 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.71 Total: -11.75 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.75 -6.72 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182028502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.172 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds