Wall clock time and date at job start Tue Mar 31 2020 13:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34733 * 116.99708 * 2 1 4 4 O 1.21478 * 120.00028 * 359.97438 * 3 2 1 5 5 C 1.47599 * 119.99802 * 180.02562 * 3 2 1 6 6 C 1.39732 * 120.12196 * 359.97438 * 5 3 2 7 7 C 1.37795 * 119.87344 * 180.02562 * 6 5 3 8 8 C 1.38690 * 120.12071 * 0.02562 * 7 6 5 9 9 F 1.35103 * 119.87178 * 179.97438 * 8 7 6 10 10 C 1.38644 * 120.25305 * 359.97438 * 8 7 6 11 11 C 1.50703 * 119.93705 * 180.02562 * 10 8 7 12 12 N 1.46903 * 109.46904 * 283.33796 * 11 10 8 13 13 C 1.46902 * 111.00074 * 164.48897 * 12 11 10 14 14 C 1.50697 * 109.47170 * 190.00163 * 13 12 11 15 15 H 1.08003 * 119.99877 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00034 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99690 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99864 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47318 * 59.99849 * 18 16 14 20 20 H 1.48502 * 109.46553 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47013 * 299.99424 * 18 16 14 22 22 C 1.46903 * 111.00104 * 288.44671 * 12 11 10 23 23 C 1.53007 * 109.46879 * 295.55153 * 22 12 11 24 24 C 1.47195 * 109.47145 * 180.43804 * 23 22 12 25 25 N 7.40616 * 102.08429 * 28.68854 * 2 1 3 26 26 C 1.37837 * 120.12168 * 0.26892 * 10 8 7 27 27 H 1.09000 * 109.47079 * 60.00031 * 1 2 3 28 28 H 1.09009 * 109.46950 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47084 * 299.99597 * 1 2 3 30 30 H 1.08000 * 120.06210 * 359.97438 * 6 5 3 31 31 H 1.08001 * 119.93564 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.47237 * 163.34493 * 11 10 8 33 33 H 1.08998 * 109.47464 * 43.34035 * 11 10 8 34 34 H 1.08997 * 109.46648 * 310.00320 * 13 12 11 35 35 H 1.08994 * 109.46929 * 70.00177 * 13 12 11 36 36 H 0.96998 * 119.99698 * 180.02562 * 17 16 14 37 37 H 1.08990 * 109.47462 * 55.54961 * 22 12 11 38 38 H 1.09000 * 109.46730 * 175.55824 * 22 12 11 39 39 H 1.09003 * 109.47097 * 300.43973 * 23 22 12 40 40 H 1.09001 * 109.46728 * 60.43670 * 23 22 12 41 41 H 1.08006 * 120.06115 * 179.70493 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2193 -0.0005 5 6 3.5376 1.2778 -0.0006 6 6 4.3011 0.1075 -0.0006 7 6 5.6769 0.1856 -0.0006 8 6 6.3037 1.4228 0.0000 9 9 7.6529 1.4935 0.0005 10 6 5.5512 2.5872 0.0000 11 6 6.2397 3.9277 0.0000 12 7 6.7476 4.2172 1.3476 13 6 7.7260 5.3127 1.3174 14 6 8.4029 5.4188 2.6596 15 1 8.1330 4.7405 3.4556 16 6 9.3660 6.3823 2.8718 17 7 9.6943 7.2085 1.9026 18 14 10.2056 6.5133 4.5353 19 1 10.9013 5.2374 4.8406 20 1 11.1945 7.6208 4.5047 21 1 9.1889 6.7857 5.5828 22 6 5.6464 4.5202 2.2715 23 6 4.9456 5.8052 1.8256 24 6 3.8487 6.1145 2.7572 25 7 3.0025 6.3530 3.4765 26 6 4.1744 2.5210 0.0050 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8139 -0.8563 0.0003 31 1 6.2680 -0.7182 -0.0002 32 1 5.5299 4.7008 -0.2946 33 1 7.0705 3.9095 -0.7053 34 1 8.4724 5.1120 0.5489 35 1 7.2158 6.2493 1.0928 36 1 10.3721 7.8861 2.0517 37 1 4.9322 3.6969 2.2680 38 1 6.0428 4.6531 3.2781 39 1 5.6616 6.6270 1.8216 40 1 4.5425 5.6696 0.8219 41 1 3.5891 3.4287 0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182028502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:53 Heat of formation + Delta-G solvation = -88.075853 kcal Electronic energy + Delta-G solvation = -26497.637598 eV Core-core repulsion = 22484.867834 eV Total energy + Delta-G solvation = -4012.769765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.84313 -41.62722 -40.20053 -38.85619 -37.48815 -37.33457 -34.76480 -33.26785 -32.07384 -31.60376 -29.12528 -28.46673 -26.69321 -25.34554 -24.91406 -23.32082 -22.10157 -21.11530 -19.03654 -18.61760 -18.57848 -18.21406 -17.95706 -17.40373 -17.18658 -16.95341 -16.50148 -16.26671 -15.70759 -15.52366 -15.25485 -14.98399 -14.88608 -14.45182 -14.42346 -14.27363 -14.06255 -13.76369 -13.52731 -13.42243 -13.23534 -13.02153 -12.93155 -12.88040 -12.70778 -12.52227 -12.44575 -12.06866 -11.81381 -11.80806 -11.69595 -11.52852 -11.23019 -10.52023 -10.06800 -9.75828 -8.95814 -8.12704 -6.18863 -0.46915 0.18643 1.37786 1.45824 1.46459 1.53458 1.65463 1.73733 1.77938 2.44475 2.57132 2.98210 3.22168 3.25654 3.44650 3.61443 3.72647 3.77074 4.07209 4.14686 4.16230 4.25382 4.33214 4.36051 4.44105 4.55971 4.68028 4.72324 4.81717 4.86843 4.92612 5.07590 5.11759 5.16005 5.21672 5.32068 5.39119 5.42201 5.72882 5.76055 6.13164 6.32851 6.56312 6.64307 6.64902 6.96069 7.49634 8.96923 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.003652 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.553670 B = 7664.789989 C = 8957.362479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.514 3.486 4 O -0.537 6.537 5 C -0.154 4.154 6 C -0.020 4.020 7 C -0.162 4.162 8 C 0.146 3.854 9 F -0.135 7.135 10 C -0.123 4.123 11 C 0.084 3.916 12 N -0.529 5.529 13 C 0.202 3.798 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.011 3.989 17 N -0.928 5.928 18 Si 0.950 3.050 19 H -0.273 1.273 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.076 3.924 23 C -0.063 4.063 24 C 0.244 3.756 25 N -0.493 5.493 26 C -0.024 4.024 27 H 0.063 0.937 28 H 0.137 0.863 29 H 0.058 0.942 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.008 0.992 35 H -0.001 1.001 36 H 0.262 0.738 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.130 0.870 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.419 -17.190 -8.085 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.361 3.639 4 O -0.429 6.429 5 C -0.156 4.156 6 C -0.038 4.038 7 C -0.180 4.180 8 C 0.126 3.874 9 F -0.114 7.114 10 C -0.124 4.124 11 C -0.044 4.044 12 N -0.251 5.251 13 C 0.077 3.923 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.187 4.187 17 N -0.569 5.569 18 Si 0.776 3.224 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.054 4.054 23 C -0.105 4.105 24 C -0.073 4.073 25 N -0.172 5.172 26 C -0.043 4.043 27 H 0.082 0.918 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.192 0.808 31 H 0.187 0.813 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.026 0.974 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.476 -16.828 -6.885 23.241 hybrid contribution 0.800 1.386 0.289 1.626 sum -13.676 -15.442 -6.596 21.657 Atomic orbital electron populations 1.23593 0.74297 1.05978 1.02513 1.86520 1.25147 1.31347 1.83846 1.21238 0.89220 0.81591 0.71863 1.90847 1.67450 1.37121 1.47448 1.19093 0.88990 0.95282 1.12214 1.21511 0.92232 0.98698 0.91354 1.21397 0.95543 0.96733 1.04369 1.18203 0.76946 0.94780 0.97474 1.91547 1.29685 1.97259 1.92865 1.19770 0.93191 0.94958 1.04523 1.21065 0.98968 0.92490 0.91833 1.62246 1.12758 1.42990 1.07090 1.19522 0.89558 0.87088 0.96155 1.21412 1.20536 1.14922 0.98541 0.92241 1.25632 0.97648 0.95655 0.99786 1.70024 1.32976 1.20199 1.33666 0.85732 0.78403 0.77546 0.80708 1.19805 1.21307 1.19868 1.21973 0.92000 0.93458 0.97985 1.20189 0.91111 1.02857 0.96329 1.29365 0.93215 0.91569 0.93179 1.81156 1.13278 1.10910 1.11832 1.21017 0.92473 0.97698 0.93078 0.91817 0.84489 0.92288 0.80786 0.81254 0.91286 0.90317 0.97380 0.98348 0.92911 0.90142 0.91127 0.87018 0.85282 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.07 9.81 -56.43 -0.55 -6.62 16 3 C 0.51 11.47 7.89 70.29 0.55 12.03 16 4 O -0.54 -15.24 16.13 19.91 0.32 -14.92 16 5 C -0.15 -3.18 5.87 -20.10 -0.12 -3.30 16 6 C -0.02 -0.31 9.61 22.53 0.22 -0.10 16 7 C -0.16 -2.84 10.01 22.27 0.22 -2.61 16 8 C 0.15 3.61 7.25 22.47 0.16 3.77 16 9 F -0.14 -4.08 16.71 44.97 0.75 -3.33 16 10 C -0.12 -3.09 4.70 -19.86 -0.09 -3.19 16 11 C 0.08 2.42 4.67 85.56 0.40 2.82 16 12 N -0.53 -19.03 4.65 -905.36 -4.21 -23.24 16 13 C 0.20 9.19 4.46 85.56 0.38 9.57 16 14 C -0.52 -26.58 8.52 25.60 0.22 -26.36 16 15 H 0.06 3.06 7.10 -2.91 -0.02 3.04 16 16 C 0.01 0.61 5.46 84.66 0.46 1.07 16 17 N -0.93 -52.28 13.29 21.45 0.28 -52.00 16 18 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C 0.08 2.45 4.96 86.31 0.43 2.88 16 23 C -0.06 -1.83 5.06 28.79 0.15 -1.68 16 24 C 0.24 7.86 15.43 89.44 1.38 9.24 16 25 N -0.49 -18.16 18.54 20.00 0.37 -17.79 16 26 C -0.02 -0.54 8.46 22.52 0.19 -0.35 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.17 1.69 7.61 -2.91 -0.02 1.67 16 31 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.07 1.70 5.79 -2.39 -0.01 1.68 16 33 H 0.08 2.43 7.71 -2.39 -0.02 2.41 16 34 H 0.01 0.41 7.87 -2.39 -0.02 0.39 16 35 H 0.00 -0.05 5.97 -2.39 -0.01 -0.06 16 36 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 37 H 0.08 2.32 6.77 -2.39 -0.02 2.30 16 38 H 0.07 2.61 6.87 -2.39 -0.02 2.59 16 39 H 0.11 3.66 6.24 -2.39 -0.01 3.64 16 40 H 0.13 2.94 6.31 -2.39 -0.02 2.92 16 41 H 0.14 3.21 7.60 -2.91 -0.02 3.19 16 Total: -1.00 -67.02 359.54 5.82 -61.20 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 1.08 Total: 6.43 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.75 Total: 5.34 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -3.55 Total: -93.03 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.23 Total: -21.54 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.75 Total: -3.33 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.02 5.82 -61.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182028502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.875 kcal (2) G-P(sol) polarization free energy of solvation -67.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds