Wall clock time and date at job start Tue Mar 31 2020 13:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48495 * 109.46870 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47239 * 300.00102 * 3 2 1 6 6 H 1.48497 * 109.47071 * 60.00343 * 3 2 1 7 7 C 1.40117 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00560 * 179.97438 * 7 2 1 9 9 C 1.46176 * 120.00014 * 359.97438 * 7 2 1 10 10 O 1.21745 * 119.99826 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00258 * 180.02562 * 9 7 2 12 12 C 1.39525 * 120.00235 * 185.27874 * 11 9 7 13 13 C 1.39028 * 120.08441 * 33.38822 * 12 11 9 14 14 C 1.38059 * 119.92155 * 180.02562 * 13 12 11 15 15 C 1.38333 * 120.08019 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.91882 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47312 * 89.99836 * 16 15 14 18 18 N 1.46899 * 109.47423 * 180.02562 * 17 16 15 19 19 C 1.46457 * 110.94286 * 63.81428 * 18 17 16 20 20 C 1.53252 * 109.86463 * 197.56853 * 19 18 17 21 21 S 1.81899 * 108.67084 * 298.30601 * 20 19 18 22 22 C 1.81900 * 101.91399 * 51.20933 * 21 20 19 23 23 C 1.46469 * 111.00235 * 190.00452 * 18 17 16 24 24 C 1.38327 * 120.16681 * 0.27382 * 15 14 13 25 25 C 1.38067 * 120.08450 * 359.45125 * 24 15 14 26 26 H 0.97000 * 120.00088 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00050 * 5.27459 * 11 9 7 28 28 H 1.08004 * 120.03952 * 359.97438 * 13 12 11 29 29 H 1.08004 * 119.96467 * 179.97438 * 14 13 12 30 30 H 1.09004 * 109.46979 * 329.99803 * 16 15 14 31 31 H 1.08998 * 109.47835 * 210.00237 * 16 15 14 32 32 H 1.08994 * 109.47087 * 60.00084 * 17 16 15 33 33 H 1.08998 * 109.47136 * 300.00139 * 17 16 15 34 34 H 1.08998 * 109.22671 * 77.55331 * 19 18 17 35 35 H 1.08999 * 109.57234 * 317.79715 * 19 18 17 36 36 H 1.09002 * 109.62837 * 178.50430 * 20 19 18 37 37 H 1.08997 * 109.63218 * 58.11401 * 20 19 18 38 38 H 1.08997 * 109.63242 * 68.39445 * 22 21 20 39 39 H 1.09004 * 109.63374 * 188.79201 * 22 21 20 40 40 H 1.08999 * 109.40766 * 42.10896 * 23 18 17 41 41 H 1.09008 * 109.40026 * 282.34923 * 23 18 17 42 42 H 1.07999 * 119.95782 * 179.72662 * 24 15 14 43 43 H 1.07998 * 120.04573 * 180.25353 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2762 -2.4794 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9501 -3.6466 -0.0005 12 6 1.2569 -4.8523 -0.1117 13 6 0.0954 -4.9209 -0.8727 14 6 -0.5881 -6.1156 -0.9799 15 6 -0.1183 -7.2438 -0.3318 16 6 -0.8669 -8.5461 -0.4519 17 6 -0.3383 -9.3292 -1.6553 18 7 -1.0685 -10.5985 -1.7727 19 6 -2.4875 -10.3626 -2.0478 20 6 -3.2955 -11.6272 -1.7372 21 16 -2.7188 -12.9680 -2.8229 22 6 -0.9199 -12.9179 -2.5584 23 6 -0.4384 -11.4772 -2.7607 24 6 1.0342 -7.1783 0.4304 25 6 1.7263 -5.9885 0.5378 26 1 -0.4850 0.8400 0.0004 27 1 2.9170 -3.6484 0.0767 28 1 -0.2723 -4.0404 -1.3786 29 1 -1.4907 -6.1696 -1.5705 30 1 -1.9292 -8.3433 -0.5884 31 1 -0.7229 -9.1331 0.4552 32 1 0.7238 -9.5320 -1.5187 33 1 -0.4825 -8.7424 -2.5624 34 1 -2.6110 -10.1031 -3.0992 35 1 -2.8479 -9.5413 -1.4285 36 1 -4.3538 -11.4392 -1.9180 37 1 -3.1466 -11.9102 -0.6952 38 1 -0.6898 -13.2417 -1.5434 39 1 -0.4261 -13.5759 -3.2735 40 1 0.6445 -11.4372 -2.6426 41 1 -0.7047 -11.1438 -3.7638 42 1 1.3956 -8.0601 0.9385 43 1 2.6282 -5.9390 1.1297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184312164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:25 Heat of formation + Delta-G solvation = -13.923484 kcal Electronic energy + Delta-G solvation = -23491.822452 eV Core-core repulsion = 20048.481352 eV Total energy + Delta-G solvation = -3443.341101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.44143 -38.60702 -37.08613 -34.12567 -32.69635 -32.22332 -31.85954 -30.33822 -29.77318 -27.24970 -25.82105 -24.06116 -23.01289 -22.29536 -21.34444 -20.67220 -19.63304 -17.58500 -17.34575 -16.39783 -15.99907 -15.65165 -15.56831 -15.05589 -14.82719 -14.42384 -14.22410 -14.13254 -13.95425 -13.43987 -13.26555 -13.03975 -12.88055 -12.76657 -12.47943 -12.35943 -12.28666 -11.94030 -11.53061 -11.36212 -11.31015 -11.12350 -10.91152 -10.85285 -10.65628 -10.47257 -10.33257 -10.00557 -9.26106 -8.90174 -8.71294 -8.41106 -8.00218 -7.77961 -7.03930 -6.38310 -4.85522 1.47201 1.91421 2.00352 2.20177 3.03301 3.11804 3.16194 3.43023 3.96082 4.19387 4.46730 4.49956 4.52706 4.63072 4.77352 4.81675 4.84694 4.97308 5.05786 5.18703 5.27681 5.33759 5.35697 5.41257 5.46652 5.54368 5.59033 5.62186 5.66447 5.81773 5.95213 6.02655 6.27425 6.39365 6.57735 6.68337 6.73238 6.89785 7.07925 7.14872 7.25053 7.42444 7.71456 8.03835 8.15745 8.81755 9.18802 10.35183 10.53310 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.039269 B = 0.001978 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.867122 B =14150.723230 C =14494.038312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.072 0.928 9 C 0.542 3.458 10 O -0.560 6.560 11 N -0.701 5.701 12 C 0.193 3.807 13 C -0.128 4.128 14 C -0.095 4.095 15 C -0.137 4.137 16 C -0.065 4.065 17 C 0.067 3.933 18 N -0.554 5.554 19 C 0.049 3.951 20 C -0.072 4.072 21 S -0.281 6.281 22 C -0.073 4.073 23 C 0.056 3.944 24 C -0.093 4.093 25 C -0.177 4.177 26 H 0.272 0.728 27 H 0.393 0.607 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.113 0.887 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 -21.235 -3.943 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.349 3.651 10 O -0.441 6.441 11 N -0.344 5.344 12 C 0.094 3.906 13 C -0.149 4.149 14 C -0.114 4.114 15 C -0.139 4.139 16 C -0.103 4.103 17 C -0.060 4.060 18 N -0.279 5.279 19 C -0.080 4.080 20 C -0.221 4.221 21 S -0.055 6.055 22 C -0.222 4.222 23 C -0.074 4.074 24 C -0.112 4.112 25 C -0.199 4.199 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.154 0.846 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.131 0.869 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.172 -21.925 -4.182 22.426 hybrid contribution 1.573 1.990 0.158 2.542 sum -0.598 -19.935 -4.024 20.346 Atomic orbital electron populations 1.69995 1.07165 1.27715 1.33849 1.25755 0.94713 1.00564 0.92510 0.86227 0.80458 0.81226 0.78398 1.18629 1.19973 1.19980 1.20900 0.93853 0.89021 1.53671 0.90947 1.18396 0.87490 0.82131 0.77089 1.90640 1.13686 1.86106 1.53709 1.44178 1.09651 1.04481 1.76116 1.18007 0.93434 0.86461 0.92671 1.21316 0.96229 0.98108 0.99245 1.20810 0.99141 0.92158 0.99242 1.19453 0.97566 0.94674 1.02228 1.20449 0.98748 0.92955 0.98099 1.22123 0.98097 0.87926 0.97887 1.61113 1.02273 1.15822 1.48714 1.22310 0.87927 0.97024 1.00734 1.23509 1.02208 0.94837 1.01554 1.86940 1.08068 1.48629 1.61877 1.23497 0.93233 0.99487 1.05942 1.22195 0.99621 0.91407 0.94144 1.20599 0.94886 0.96824 0.98870 1.20859 1.02712 0.93304 1.02985 0.91765 0.77408 0.84566 0.87036 0.91555 0.90788 0.90352 0.94332 0.93406 0.88784 0.87556 0.88969 0.89013 0.87613 0.89565 0.93377 0.86894 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.88 11.82 55.55 0.66 -21.22 16 2 C 0.09 2.30 5.50 -17.35 -0.10 2.20 16 3 Si 0.91 19.33 29.56 -169.99 -5.02 14.30 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -14.57 9.54 -35.69 -0.34 -14.91 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.54 14.91 7.47 -13.08 -0.10 14.81 16 10 O -0.56 -17.32 12.70 5.15 0.07 -17.26 16 11 N -0.70 -15.63 5.32 -11.20 -0.06 -15.69 16 12 C 0.19 3.98 6.28 -83.77 -0.53 3.46 16 13 C -0.13 -2.68 8.65 -39.35 -0.34 -3.02 16 14 C -0.09 -1.61 9.69 -39.61 -0.38 -1.99 16 15 C -0.14 -2.00 5.14 -104.56 -0.54 -2.54 16 16 C -0.06 -0.72 5.26 -27.89 -0.15 -0.87 16 17 C 0.07 0.66 4.94 -3.83 -0.02 0.64 16 18 N -0.55 -4.99 4.41 -235.05 -1.04 -6.03 16 19 C 0.05 0.42 5.30 -3.93 -0.02 0.40 16 20 C -0.07 -0.58 6.68 37.29 0.25 -0.33 16 21 S -0.28 -2.59 22.40 -107.50 -2.41 -5.00 16 22 C -0.07 -0.55 6.69 37.29 0.25 -0.30 16 23 C 0.06 0.44 5.43 -3.93 -0.02 0.42 16 24 C -0.09 -1.38 9.69 -39.61 -0.38 -1.76 16 25 C -0.18 -3.00 9.97 -39.35 -0.39 -3.39 16 26 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 27 H 0.39 7.46 8.79 -40.82 -0.36 7.11 16 28 H 0.14 3.29 6.42 -52.48 -0.34 2.95 16 29 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.07 0.71 6.12 -51.93 -0.32 0.39 16 31 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 32 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.44 7.92 -51.93 -0.41 0.03 16 35 H 0.09 0.78 5.77 -51.93 -0.30 0.48 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.61 7.76 -51.93 -0.40 0.20 16 41 H 0.05 0.41 7.92 -51.92 -0.41 0.00 16 42 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 43 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.15 361.39 -11.46 -43.60 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -6.29 Total: 9.02 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.81 Total: -7.18 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.44 Total: -42.94 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: 0.07 Total: -17.26 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Atomic # 16 Polarization: -2.59 SS G_CDS: -2.41 Total: -5.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.15 -11.46 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184312164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.681 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds