Wall clock time and date at job start Tue Mar 31 2020 13:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86806 * 119.99931 * 2 1 4 4 H 1.48495 * 109.46870 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47239 * 300.00102 * 3 2 1 6 6 H 1.48497 * 109.47071 * 60.00343 * 3 2 1 7 7 C 1.40117 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00560 * 179.97438 * 7 2 1 9 9 C 1.46176 * 120.00014 * 359.97438 * 7 2 1 10 10 O 1.21745 * 119.99826 * 0.02562 * 9 7 2 11 11 N 1.34774 * 120.00258 * 180.02562 * 9 7 2 12 12 C 1.39525 * 120.00235 * 185.27874 * 11 9 7 13 13 C 1.39028 * 120.08441 * 33.38822 * 12 11 9 14 14 C 1.38059 * 119.92155 * 180.02562 * 13 12 11 15 15 C 1.38333 * 120.08019 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.91882 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47312 * 89.99836 * 16 15 14 18 18 N 1.46899 * 109.47423 * 180.02562 * 17 16 15 19 19 C 1.46457 * 110.94286 * 63.81428 * 18 17 16 20 20 C 1.53252 * 109.86463 * 197.56853 * 19 18 17 21 21 S 1.81899 * 108.67084 * 298.30601 * 20 19 18 22 22 C 1.81900 * 101.91399 * 51.20933 * 21 20 19 23 23 C 1.46469 * 111.00235 * 190.00452 * 18 17 16 24 24 C 1.38327 * 120.16681 * 0.27382 * 15 14 13 25 25 C 1.38067 * 120.08450 * 359.45125 * 24 15 14 26 26 H 0.97000 * 120.00088 * 359.97438 * 1 2 3 27 27 H 0.97002 * 120.00050 * 5.27459 * 11 9 7 28 28 H 1.08004 * 120.03952 * 359.97438 * 13 12 11 29 29 H 1.08004 * 119.96467 * 179.97438 * 14 13 12 30 30 H 1.09004 * 109.46979 * 329.99803 * 16 15 14 31 31 H 1.08998 * 109.47835 * 210.00237 * 16 15 14 32 32 H 1.08994 * 109.47087 * 60.00084 * 17 16 15 33 33 H 1.08998 * 109.47136 * 300.00139 * 17 16 15 34 34 H 1.08998 * 109.22671 * 77.55331 * 19 18 17 35 35 H 1.08999 * 109.57234 * 317.79715 * 19 18 17 36 36 H 1.09002 * 109.62837 * 178.50430 * 20 19 18 37 37 H 1.08997 * 109.63218 * 58.11401 * 20 19 18 38 38 H 1.08997 * 109.63242 * 68.39445 * 22 21 20 39 39 H 1.09004 * 109.63374 * 188.79201 * 22 21 20 40 40 H 1.08999 * 109.40766 * 42.10896 * 23 18 17 41 41 H 1.09008 * 109.40026 * 282.34923 * 23 18 17 42 42 H 1.07999 * 119.95782 * 179.72662 * 24 15 14 43 43 H 1.07998 * 120.04573 * 180.25353 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7004 1.3464 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8817 2.3964 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2135 -0.0010 9 6 1.2762 -2.4794 -0.0005 10 8 0.0588 -2.4794 -0.0005 11 7 1.9501 -3.6466 -0.0005 12 6 1.2569 -4.8523 -0.1117 13 6 0.0954 -4.9209 -0.8727 14 6 -0.5881 -6.1156 -0.9799 15 6 -0.1183 -7.2438 -0.3318 16 6 -0.8669 -8.5461 -0.4519 17 6 -0.3383 -9.3292 -1.6553 18 7 -1.0685 -10.5985 -1.7727 19 6 -2.4875 -10.3626 -2.0478 20 6 -3.2955 -11.6272 -1.7372 21 16 -2.7188 -12.9680 -2.8229 22 6 -0.9199 -12.9179 -2.5584 23 6 -0.4384 -11.4772 -2.7607 24 6 1.0342 -7.1783 0.4304 25 6 1.7263 -5.9885 0.5378 26 1 -0.4850 0.8400 0.0004 27 1 2.9170 -3.6484 0.0767 28 1 -0.2723 -4.0404 -1.3786 29 1 -1.4907 -6.1696 -1.5705 30 1 -1.9292 -8.3433 -0.5884 31 1 -0.7229 -9.1331 0.4552 32 1 0.7238 -9.5320 -1.5187 33 1 -0.4825 -8.7424 -2.5624 34 1 -2.6110 -10.1031 -3.0992 35 1 -2.8479 -9.5413 -1.4285 36 1 -4.3538 -11.4392 -1.9180 37 1 -3.1466 -11.9102 -0.6952 38 1 -0.6898 -13.2417 -1.5434 39 1 -0.4261 -13.5759 -3.2735 40 1 0.6445 -11.4372 -2.6426 41 1 -0.7047 -11.1438 -3.7638 42 1 1.3956 -8.0601 0.9385 43 1 2.6282 -5.9390 1.1297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184312164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:24 Heat of formation + Delta-G solvation = -34.341893 kcal Electronic energy + Delta-G solvation = -23492.707861 eV Core-core repulsion = 20048.481352 eV Total energy + Delta-G solvation = -3444.226509 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.89269 -39.58509 -38.68145 -35.71203 -34.62663 -33.52691 -32.53107 -31.72698 -30.86026 -28.85680 -27.30250 -24.74622 -24.12953 -23.67717 -22.51370 -21.70756 -21.18304 -19.47533 -18.09925 -17.92833 -17.58842 -16.84727 -16.43529 -16.24091 -15.96105 -15.76360 -15.33844 -14.99559 -14.98440 -14.79153 -14.60692 -14.35701 -14.16844 -13.94152 -13.71449 -13.46035 -13.23581 -13.05512 -12.90345 -12.75850 -12.71083 -12.53874 -12.20629 -12.07217 -12.01345 -11.81953 -11.48691 -11.06515 -10.75848 -10.61788 -9.99173 -9.68589 -9.43913 -8.71501 -8.64226 -8.39040 -6.96725 0.51909 0.60771 0.84037 1.37962 1.38302 1.56579 1.57767 2.19392 2.35308 2.70519 2.91390 3.02821 3.56810 3.83845 3.85571 3.96197 4.06466 4.12369 4.20325 4.22426 4.28290 4.35984 4.40314 4.52848 4.60222 4.62573 4.71285 4.73757 4.81730 4.85392 4.93029 4.96865 5.09488 5.18003 5.22876 5.24647 5.52342 5.55723 5.79500 5.81335 5.96392 6.00011 6.05832 6.16318 6.44996 6.75834 7.33551 8.34134 8.55019 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.039269 B = 0.001978 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.867122 B =14150.723230 C =14494.038312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.028 3.972 3 Si 1.002 2.998 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.529 3.471 10 O -0.608 6.608 11 N -0.696 5.696 12 C 0.152 3.848 13 C -0.158 4.158 14 C -0.099 4.099 15 C -0.117 4.117 16 C -0.059 4.059 17 C 0.073 3.927 18 N -0.553 5.553 19 C 0.049 3.951 20 C -0.062 4.062 21 S -0.323 6.323 22 C -0.061 4.061 23 C 0.055 3.945 24 C -0.085 4.085 25 C -0.167 4.167 26 H 0.277 0.723 27 H 0.406 0.594 28 H 0.088 0.912 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.027 0.973 34 H 0.039 0.961 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.156 0.844 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.150 -23.096 -3.134 23.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.192 1.192 7 C -0.602 4.602 8 H 0.111 0.889 9 C 0.335 3.665 10 O -0.494 6.494 11 N -0.340 5.340 12 C 0.055 3.945 13 C -0.180 4.180 14 C -0.118 4.118 15 C -0.118 4.118 16 C -0.096 4.096 17 C -0.054 4.054 18 N -0.278 5.278 19 C -0.080 4.080 20 C -0.211 4.211 21 S -0.097 6.097 22 C -0.210 4.210 23 C -0.074 4.074 24 C -0.103 4.103 25 C -0.188 4.188 26 H 0.088 0.912 27 H 0.242 0.758 28 H 0.106 0.894 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.119 0.881 41 H 0.059 0.941 42 H 0.173 0.827 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.431 -23.856 -3.378 24.098 hybrid contribution 0.992 2.348 -0.115 2.552 sum 0.561 -21.508 -3.492 21.797 Atomic orbital electron populations 1.70159 1.09603 1.29303 1.35262 1.27039 0.95587 1.05107 0.91107 0.84901 0.79379 0.74999 0.78617 1.16790 1.19300 1.19230 1.21448 0.95012 0.89629 1.54084 0.88918 1.18747 0.87181 0.83900 0.76643 1.90595 1.15686 1.87280 1.55815 1.43705 1.10189 1.04116 1.76006 1.18290 0.94213 0.86988 0.94980 1.21108 0.97836 0.98088 1.00944 1.20965 0.99379 0.91665 0.99776 1.19833 0.97117 0.95128 0.99757 1.20448 0.98605 0.91154 0.99406 1.21992 0.98560 0.88127 0.96706 1.61126 1.02329 1.15261 1.49125 1.22320 0.87951 0.97401 1.00329 1.23493 1.02652 0.93802 1.01133 1.87107 1.10378 1.49566 1.62673 1.23514 0.91415 0.99484 1.06540 1.22239 1.00364 0.91315 0.93463 1.21089 0.94064 0.97262 0.97911 1.21139 1.03340 0.92477 1.01860 0.91246 0.75825 0.89406 0.85750 0.90988 0.89230 0.89560 0.95417 0.94240 0.88396 0.86608 0.88730 0.88712 0.86168 0.88141 0.94128 0.82675 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.02 11.82 21.85 0.26 -48.76 16 2 C 0.03 1.51 5.50 85.33 0.47 1.98 16 3 Si 1.00 39.91 29.56 68.60 2.03 41.94 16 4 H -0.25 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 6 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 7 C -0.57 -31.49 9.54 24.79 0.24 -31.25 16 8 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 9 C 0.53 30.58 7.47 86.30 0.65 31.23 16 10 O -0.61 -40.27 12.70 -4.49 -0.06 -40.32 16 11 N -0.70 -32.18 5.32 -307.53 -1.64 -33.82 16 12 C 0.15 6.43 6.28 38.30 0.24 6.68 16 13 C -0.16 -7.03 8.65 22.42 0.19 -6.83 16 14 C -0.10 -3.39 9.69 22.25 0.22 -3.17 16 15 C -0.12 -3.11 5.14 -19.82 -0.10 -3.22 16 16 C -0.06 -1.11 5.26 29.85 0.16 -0.95 16 17 C 0.07 1.24 4.94 86.30 0.43 1.66 16 18 N -0.55 -8.44 4.41 -897.55 -3.95 -12.39 16 19 C 0.05 0.75 5.30 86.47 0.46 1.20 16 20 C -0.06 -0.89 6.68 72.07 0.48 -0.41 16 21 S -0.32 -5.52 22.40 -56.49 -1.27 -6.78 16 22 C -0.06 -0.78 6.69 72.07 0.48 -0.29 16 23 C 0.06 0.74 5.43 86.47 0.47 1.21 16 24 C -0.08 -2.21 9.69 22.25 0.22 -2.00 16 25 C -0.17 -5.36 9.97 22.42 0.22 -5.14 16 26 H 0.28 15.04 8.29 -92.71 -0.77 14.27 16 27 H 0.41 15.73 8.79 -92.71 -0.82 14.92 16 28 H 0.09 4.70 6.42 -2.91 -0.02 4.68 16 29 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.07 1.33 6.12 -2.38 -0.01 1.32 16 31 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 32 H 0.09 1.35 7.84 -2.39 -0.02 1.34 16 33 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.04 0.67 7.92 -2.39 -0.02 0.65 16 35 H 0.10 1.41 5.77 -2.39 -0.01 1.40 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 1.08 7.76 -2.39 -0.02 1.06 16 41 H 0.04 0.62 7.92 -2.38 -0.02 0.60 16 42 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.14 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.16 361.39 0.39 -74.77 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 0.20 Total: 34.66 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.81 Total: -9.29 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -5.33 Total: -94.97 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.06 Total: -40.32 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 16 Polarization: -5.52 SS G_CDS: -1.27 Total: -6.78 kcal Total: -75.16 0.39 -74.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184312164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.425 kcal (2) G-P(sol) polarization free energy of solvation -75.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds