Wall clock time and date at job start Tue Mar 31 2020 12:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47065 * 2 1 4 4 C 1.50701 * 109.47050 * 239.99929 * 2 1 3 5 5 H 1.07995 * 119.99932 * 240.00521 * 4 2 1 6 6 C 1.37879 * 119.99956 * 59.99691 * 4 2 1 7 7 N 1.31518 * 119.99968 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99970 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47193 * 0.02562 * 8 6 4 10 10 H 1.48511 * 109.46934 * 120.00686 * 8 6 4 11 11 H 1.48502 * 109.47173 * 240.00242 * 8 6 4 12 12 N 1.46498 * 109.46988 * 120.00296 * 2 1 3 13 13 C 1.34778 * 120.00200 * 274.99592 * 12 2 1 14 14 O 1.21607 * 119.99451 * 0.02562 * 13 12 2 15 15 C 1.47433 * 120.00628 * 180.02562 * 13 12 2 16 16 C 1.37562 * 119.82017 * 0.57743 * 15 13 12 17 17 C 1.40965 * 121.31981 * 180.29591 * 16 15 13 18 18 C 1.40511 * 120.43473 * 179.10129 * 17 16 15 19 19 C 1.36334 * 119.84159 * 180.02562 * 18 17 16 20 20 C 1.39012 * 120.85755 * 359.97438 * 19 18 17 21 21 C 1.36570 * 120.74420 * 0.02562 * 20 19 18 22 22 C 1.39693 * 119.84759 * 0.28767 * 21 20 19 23 23 C 1.46574 * 120.93811 * 179.69572 * 22 21 20 24 24 C 1.39886 * 121.49013 * 359.97438 * 23 22 21 25 25 C 1.37085 * 118.16393 * 180.02562 * 24 23 22 26 26 C 1.38867 * 119.73855 * 359.97438 * 25 24 23 27 27 N 1.31442 * 121.59394 * 359.97438 * 26 25 24 28 28 C 1.33100 * 121.37503 * 0.03656 * 27 26 25 29 29 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46568 * 299.99922 * 1 2 3 31 31 H 1.08998 * 109.46933 * 59.99666 * 1 2 3 32 32 H 0.97000 * 120.00090 * 179.97438 * 7 6 4 33 33 H 0.96998 * 120.00193 * 94.99676 * 12 2 1 34 34 H 1.07993 * 119.33406 * 359.39826 * 16 15 13 35 35 H 1.07999 * 120.08144 * 0.04844 * 18 17 16 36 36 H 1.07994 * 119.56831 * 179.97438 * 19 18 17 37 37 H 1.07999 * 119.62191 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.07148 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.91336 * 359.97438 * 24 23 22 40 40 H 1.08006 * 120.13001 * 180.02562 * 25 24 23 41 41 H 1.07996 * 119.20384 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 3.1474 -2.2863 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1472 -0.1858 -4.8161 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8575 1.1614 2.4118 15 6 2.6391 -0.7132 3.5608 16 6 2.9769 -2.0449 3.4919 17 6 3.4446 -2.7418 4.6244 18 6 3.7666 -4.1068 4.5375 19 6 4.2174 -4.7691 5.6406 20 6 4.3649 -4.1114 6.8564 21 6 4.0607 -2.7852 6.9742 22 6 3.5900 -2.0787 5.8648 23 6 3.2500 -0.6565 5.9659 24 6 3.3827 0.0427 7.1702 25 6 3.0446 1.3710 7.1878 26 6 2.5862 1.9806 6.0273 27 7 2.4663 1.3143 4.9007 28 6 2.7790 0.0229 4.8227 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 0.7094 1.1618 -3.4844 33 1 2.2490 -1.6318 1.1526 34 1 2.8680 -2.5706 2.5548 35 1 3.6575 -4.6300 3.5990 36 1 4.4632 -5.8182 5.5689 37 1 4.7241 -4.6554 7.7174 38 1 4.1797 -2.2850 7.9239 39 1 3.7409 -0.4507 8.0617 40 1 3.1352 1.9415 8.1005 41 1 2.3219 3.0274 6.0511 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194746706.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:13 Heat of formation + Delta-G solvation = 17.294249 kcal Electronic energy + Delta-G solvation = -25528.388106 eV Core-core repulsion = 21950.956756 eV Total energy + Delta-G solvation = -3577.431349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.99285 -40.30695 -39.86549 -36.70842 -36.22363 -34.45588 -34.28261 -32.67448 -31.54709 -30.41394 -29.79789 -27.36605 -25.56023 -25.27735 -24.60846 -22.93282 -22.41716 -21.54400 -20.09363 -19.14465 -18.49415 -17.89872 -17.33156 -16.97827 -16.72635 -16.25710 -16.01184 -15.76940 -15.58676 -15.13924 -14.93122 -14.74800 -14.61555 -14.40951 -14.04556 -13.94115 -13.72026 -13.65668 -13.00146 -12.96678 -12.89909 -12.75200 -12.37293 -12.30250 -12.11652 -11.87479 -11.80913 -11.34709 -11.11425 -10.93563 -10.62057 -10.47222 -10.10782 -9.78643 -9.29789 -9.01747 -8.18159 -6.36491 -0.90244 -0.47850 0.43378 0.88112 1.17254 1.44211 1.44839 1.57631 2.30451 2.34586 2.53775 2.68569 3.11962 3.18092 3.22684 3.48937 3.58252 3.65912 3.76743 3.97111 4.00501 4.19274 4.28848 4.38861 4.45482 4.48757 4.61110 4.72618 4.80376 4.85814 4.89860 4.99546 5.02234 5.06862 5.11355 5.16684 5.41290 5.47375 5.54188 5.55959 5.59199 5.66487 5.75071 5.90121 5.98127 6.07157 6.70570 6.93351 7.10408 7.31006 7.55006 8.88942 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.003599 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.324382 B = 7778.132357 C = 9423.877297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.273 3.727 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.977 3.023 9 H -0.257 1.257 10 H -0.277 1.277 11 H -0.284 1.284 12 N -0.704 5.704 13 C 0.534 3.466 14 O -0.564 6.564 15 C -0.142 4.142 16 C -0.026 4.026 17 C -0.088 4.088 18 C -0.094 4.094 19 C -0.119 4.119 20 C -0.090 4.090 21 C -0.118 4.118 22 C -0.031 4.031 23 C -0.106 4.106 24 C -0.058 4.058 25 C -0.159 4.159 26 C 0.095 3.905 27 N -0.494 5.494 28 C 0.139 3.861 29 H 0.042 0.958 30 H 0.006 0.994 31 H 0.069 0.931 32 H 0.266 0.734 33 H 0.401 0.599 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 -13.106 24.670 29.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.170 3.830 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.181 1.181 10 H -0.202 1.202 11 H -0.210 1.210 12 N -0.354 5.354 13 C 0.321 3.679 14 O -0.444 6.444 15 C -0.146 4.146 16 C -0.046 4.046 17 C -0.088 4.088 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.032 4.032 23 C -0.108 4.108 24 C -0.083 4.083 25 C -0.178 4.178 26 C -0.070 4.070 27 N -0.201 5.201 28 C 0.010 3.990 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.237 0.763 34 H 0.171 0.829 35 H 0.168 0.832 36 H 0.176 0.824 37 H 0.181 0.819 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.200 0.800 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 8.059 -11.738 23.740 27.682 hybrid contribution 0.133 -0.197 -0.821 0.855 sum 8.191 -11.934 22.919 27.107 Atomic orbital electron populations 1.21889 0.98331 0.99460 0.99371 1.18350 0.91087 0.91850 0.81711 0.98694 1.21556 1.32671 1.13620 0.90598 0.90648 1.25866 0.94802 0.95588 1.02462 1.70080 1.37041 1.23993 1.24607 0.85224 0.78122 0.78493 0.78039 1.18095 1.20226 1.20992 1.46223 1.65784 1.13956 1.09478 1.18588 0.78655 0.86791 0.83815 1.90755 1.51257 1.17107 1.85265 1.20732 1.06687 0.94790 0.92354 1.21744 0.91835 0.91647 0.99409 1.18142 1.02695 0.95548 0.92407 1.21466 0.97097 0.91492 1.01109 1.21327 0.98228 1.01823 0.92266 1.21455 0.96483 0.93960 0.98909 1.21205 0.99203 0.95326 0.97814 1.19036 0.98498 0.91120 0.94501 1.19787 1.02022 0.94466 0.94507 1.21738 0.95436 0.94319 0.96818 1.22350 0.99143 0.95891 1.00461 1.23558 0.94204 1.01253 0.87951 1.68113 1.14831 1.07994 1.29208 1.19709 0.96935 0.90085 0.92283 0.93922 0.97509 0.91221 0.92506 0.76321 0.82920 0.83185 0.82435 0.81938 0.82522 0.79932 0.79964 0.81114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.21 9.26 71.98 0.67 -6.54 16 2 C 0.27 15.33 2.56 44.25 0.11 15.44 16 3 H 0.00 -0.32 7.58 -2.39 -0.02 -0.34 16 4 C -0.55 -30.21 8.73 25.60 0.22 -29.98 16 5 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -54.62 11.32 21.45 0.24 -54.38 16 8 Si 0.98 42.96 29.54 68.60 2.03 44.98 16 9 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 12 N -0.70 -33.07 5.01 -449.36 -2.25 -35.33 16 13 C 0.53 26.00 7.73 86.67 0.67 26.67 16 14 O -0.56 -32.70 14.90 -4.05 -0.06 -32.76 16 15 C -0.14 -5.55 6.02 -18.79 -0.11 -5.66 16 16 C -0.03 -0.76 9.19 22.78 0.21 -0.55 16 17 C -0.09 -2.11 5.74 -21.28 -0.12 -2.23 16 18 C -0.09 -1.56 9.73 22.38 0.22 -1.34 16 19 C -0.12 -1.37 9.95 22.01 0.22 -1.15 16 20 C -0.09 -0.93 9.97 22.07 0.22 -0.71 16 21 C -0.12 -1.65 9.43 22.23 0.21 -1.44 16 22 C -0.03 -0.70 5.89 -19.97 -0.12 -0.82 16 23 C -0.11 -2.87 5.89 -20.01 -0.12 -2.99 16 24 C -0.06 -1.08 9.53 22.40 0.21 -0.86 16 25 C -0.16 -2.96 10.04 22.15 0.22 -2.74 16 26 C 0.10 2.69 11.15 84.90 0.95 3.64 16 27 N -0.49 -19.80 8.52 -184.39 -1.57 -21.37 16 28 C 0.14 5.20 6.76 41.88 0.28 5.49 16 29 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.07 4.09 6.07 -2.39 -0.01 4.08 16 32 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 33 H 0.40 15.64 6.49 -92.71 -0.60 15.04 16 34 H 0.15 3.84 6.26 -2.91 -0.02 3.82 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.16 1.18 6.43 -2.91 -0.02 1.16 16 39 H 0.18 1.59 6.48 -2.91 -0.02 1.57 16 40 H 0.18 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -85.12 345.41 3.26 -81.87 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.48 Total: 21.62 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 4.39 Total: -4.63 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -3.58 Total: -111.08 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.06 Total: -32.76 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -85.12 3.26 -81.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194746706.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.160 kcal (2) G-P(sol) polarization free energy of solvation -85.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds