Wall clock time and date at job start Tue Mar 31 2020 12:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47364 * 2 1 4 4 O 1.42902 * 109.46819 * 239.99945 * 2 1 3 5 5 C 1.35945 * 116.99716 * 83.47035 * 4 2 1 6 6 C 1.38716 * 120.02646 * 177.85190 * 5 4 2 7 7 C 1.38149 * 119.96414 * 179.74642 * 6 5 4 8 8 C 1.38452 * 120.03226 * 0.52978 * 7 6 5 9 9 F 1.35106 * 119.96896 * 179.72432 * 8 7 6 10 10 C 1.38450 * 120.06083 * 359.74675 * 8 7 6 11 11 C 1.38148 * 120.03025 * 359.97383 * 10 8 7 12 12 C 1.50694 * 109.47055 * 120.00088 * 2 1 3 13 13 O 1.21286 * 120.00159 * 100.66980 * 12 2 1 14 14 N 1.34783 * 120.00371 * 280.67543 * 12 2 1 15 15 C 1.46492 * 120.00374 * 184.21160 * 14 12 2 16 16 C 1.50705 * 109.47211 * 269.99621 * 15 14 12 17 17 H 1.07998 * 119.99610 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99889 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00241 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99640 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47265 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47326 * 119.99970 * 20 18 16 23 23 H 1.48508 * 109.46896 * 239.99824 * 20 18 16 24 24 C 1.46500 * 119.99494 * 4.20938 * 14 12 2 25 25 C 1.53002 * 109.47286 * 264.58985 * 24 14 12 26 26 C 1.47193 * 109.47392 * 180.02562 * 25 24 14 27 27 N 5.37572 * 91.27244 * 28.70235 * 2 1 3 28 28 H 1.09000 * 109.46908 * 173.84159 * 1 2 3 29 29 H 1.09000 * 109.46933 * 293.84461 * 1 2 3 30 30 H 1.09001 * 109.46781 * 53.84182 * 1 2 3 31 31 H 1.07998 * 120.01349 * 0.02562 * 6 5 4 32 32 H 1.07996 * 119.98049 * 180.25442 * 7 6 5 33 33 H 1.07997 * 119.98256 * 180.02562 * 10 8 7 34 34 H 1.08001 * 120.01748 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47364 * 30.00031 * 15 14 12 36 36 H 1.09002 * 109.47048 * 149.99536 * 15 14 12 37 37 H 0.96992 * 119.99565 * 179.97438 * 19 18 16 38 38 H 1.08996 * 109.47231 * 24.58793 * 24 14 12 39 39 H 1.08998 * 109.47140 * 144.59107 * 24 14 12 40 40 H 1.09009 * 109.46629 * 300.00252 * 25 24 14 41 41 H 1.09004 * 109.47359 * 59.99983 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0821 0.0547 -2.3122 6 6 2.5778 -0.5241 -3.4713 7 6 2.6494 0.2157 -4.6358 8 6 2.2369 1.5373 -4.6436 9 9 2.3127 2.2612 -5.7819 10 6 1.7474 2.1179 -3.4860 11 6 1.6693 1.3788 -2.3215 12 6 2.0324 -0.7104 1.2304 13 8 2.4179 -1.8578 1.1533 14 7 2.0532 -0.0708 2.4166 15 6 2.6265 -0.7284 3.5935 16 6 1.5495 -1.4987 4.3131 17 1 0.5391 -1.4986 3.9317 18 6 1.8543 -2.2042 5.4579 19 7 3.0850 -2.2054 5.9214 20 14 0.5194 -3.1594 6.3494 21 1 -0.7694 -2.9982 5.6297 22 1 0.8856 -4.5978 6.3937 23 1 0.3807 -2.6411 7.7342 24 6 1.5024 1.2820 2.5291 25 6 2.6299 2.3057 2.3810 26 6 2.0767 3.6649 2.4945 27 7 1.6494 4.7140 2.5811 28 1 -0.3633 -1.0217 -0.1102 29 1 -0.3633 0.4154 0.9400 30 1 -0.3633 0.6064 -0.8298 31 1 2.9034 -1.5538 -3.4644 32 1 3.0314 -0.2359 -5.5394 33 1 1.4256 3.1488 -3.4936 34 1 1.2869 1.8318 -1.4187 35 1 3.4146 -1.4129 3.2794 36 1 3.0441 0.0239 4.2626 37 1 3.2993 -2.7014 6.7269 38 1 0.7631 1.4398 1.7438 39 1 1.0288 1.4017 3.5034 40 1 3.3693 2.1479 3.1663 41 1 3.1036 2.1860 1.4065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198119759.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:31 Heat of formation + Delta-G solvation = -76.978296 kcal Electronic energy + Delta-G solvation = -26426.506383 eV Core-core repulsion = 22414.217845 eV Total energy + Delta-G solvation = -4012.288539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -49.78664 -41.75603 -40.40585 -38.25578 -37.93610 -36.73549 -34.93288 -33.18790 -32.18543 -31.98093 -30.22370 -29.17414 -26.13308 -25.36956 -24.61199 -23.88215 -22.78316 -20.28837 -19.55229 -18.80010 -18.40184 -18.32490 -17.99683 -17.41004 -16.91400 -16.74691 -16.43184 -16.22052 -15.76233 -15.73315 -15.53853 -15.11384 -14.79967 -14.54723 -14.29210 -14.18164 -14.09673 -13.78970 -13.67585 -13.49677 -13.32986 -13.26279 -13.09554 -12.93359 -12.74308 -12.65544 -12.53272 -12.17455 -11.96158 -11.85179 -11.68248 -11.64128 -10.58566 -10.56322 -10.15762 -9.55584 -9.10235 -8.17476 -6.28822 0.17864 0.21699 1.40425 1.43634 1.49522 1.53318 1.73243 1.82664 1.85033 2.41782 2.55655 2.58758 3.06956 3.15645 3.34896 3.50377 3.63974 3.76490 3.86823 3.89108 3.99826 4.08667 4.17408 4.33398 4.42789 4.53215 4.65492 4.72694 4.81738 4.93294 5.00723 5.07587 5.12787 5.17098 5.19299 5.25932 5.33069 5.57803 5.71291 5.84879 6.12524 6.31620 6.60453 6.65435 6.80751 7.29018 7.44477 8.89694 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.015063 B = 0.003318 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.470191 B = 8435.567570 C = 9684.293255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 H 0.130 0.870 4 O -0.308 6.308 5 C 0.109 3.891 6 C -0.135 4.135 7 C -0.108 4.108 8 C 0.040 3.960 9 F -0.149 7.149 10 C -0.107 4.107 11 C -0.182 4.182 12 C 0.506 3.494 13 O -0.572 6.572 14 N -0.589 5.589 15 C 0.260 3.740 16 C -0.538 4.538 17 H 0.056 0.944 18 C 0.012 3.988 19 N -0.925 5.925 20 Si 0.956 3.044 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.101 3.899 25 C -0.042 4.042 26 C 0.245 3.755 27 N -0.483 5.483 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.003 0.997 36 H 0.043 0.957 37 H 0.265 0.735 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 10.592 -17.379 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.013 3.987 3 H 0.147 0.853 4 O -0.221 6.221 5 C 0.064 3.936 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.021 3.979 9 F -0.128 7.128 10 C -0.125 4.125 11 C -0.200 4.200 12 C 0.293 3.707 13 O -0.450 6.450 14 N -0.320 5.320 15 C 0.139 3.861 16 C -0.577 4.577 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.565 5.565 20 Si 0.782 3.218 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.023 4.023 25 C -0.083 4.083 26 C -0.073 4.073 27 N -0.161 5.161 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.180 0.820 35 H 0.021 0.979 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.605 11.311 -17.135 20.846 hybrid contribution -0.129 -1.147 0.716 1.358 sum -3.734 10.164 -16.419 19.668 Atomic orbital electron populations 1.22446 0.91021 1.04407 1.05617 1.22412 0.97001 0.97255 0.82003 0.85313 1.86252 1.80995 1.38843 1.16029 1.19372 0.96527 0.91229 0.86491 1.20472 1.03002 1.01848 0.90002 1.21124 0.99959 0.92312 0.99299 1.17809 1.06099 0.90912 0.83106 1.91475 1.94725 1.77610 1.48983 1.21180 0.98934 1.01797 0.90612 1.21372 1.05458 0.92757 1.00434 1.20672 0.78525 0.86503 0.84958 1.90709 1.48736 1.19558 1.86000 1.47982 1.59428 1.15933 1.08678 1.18883 0.92978 0.92533 0.81680 1.21770 0.96159 1.30651 1.09083 0.92585 1.25700 0.97512 0.97333 0.98225 1.70021 1.19733 1.43225 1.23558 0.85532 0.79555 0.78153 0.78564 1.19096 1.21361 1.19914 1.21807 0.95208 0.79295 1.06006 1.19845 0.99229 0.81342 1.07931 1.29028 0.92323 0.94361 0.91544 1.81275 1.10335 1.13740 1.10765 0.92274 0.88508 0.87845 0.83907 0.82295 0.82258 0.81962 0.97888 0.93864 0.92602 0.87011 0.88896 0.85932 0.84738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 8.82 71.98 0.63 -2.77 16 2 C 0.07 1.72 1.80 29.85 0.05 1.78 16 3 H 0.13 1.97 4.63 -2.39 -0.01 1.96 16 4 O -0.31 -8.55 9.41 -74.64 -0.70 -9.25 16 5 C 0.11 2.35 6.58 22.49 0.15 2.49 16 6 C -0.13 -2.68 9.99 22.36 0.22 -2.46 16 7 C -0.11 -1.83 10.02 22.30 0.22 -1.61 16 8 C 0.04 0.71 7.30 22.37 0.16 0.87 16 9 F -0.15 -2.87 17.27 44.97 0.78 -2.09 16 10 C -0.11 -1.60 10.02 22.30 0.22 -1.37 16 11 C -0.18 -2.86 8.28 22.36 0.19 -2.68 16 12 C 0.51 18.11 6.94 87.65 0.61 18.72 16 13 O -0.57 -27.81 16.23 15.24 0.25 -27.56 16 14 N -0.59 -19.88 2.46 -826.15 -2.03 -21.91 16 15 C 0.26 12.01 5.15 85.64 0.44 12.45 16 16 C -0.54 -28.08 9.39 25.60 0.24 -27.84 16 17 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 18 C 0.01 0.62 5.46 84.65 0.46 1.08 16 19 N -0.93 -52.55 13.29 21.45 0.28 -52.26 16 20 Si 0.96 42.78 29.54 68.60 2.03 44.81 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.10 2.16 4.87 86.38 0.42 2.58 16 25 C -0.04 -0.67 5.93 28.79 0.17 -0.50 16 26 C 0.24 4.67 15.43 89.44 1.38 6.05 16 27 N -0.48 -12.09 18.54 20.00 0.37 -11.72 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.61 6.17 -2.39 -0.01 1.59 16 30 H 0.10 1.34 6.94 -2.39 -0.02 1.32 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.16 1.69 5.42 -2.91 -0.02 1.68 16 35 H 0.00 0.16 7.48 -2.38 -0.02 0.15 16 36 H 0.04 1.94 8.07 -2.39 -0.02 1.92 16 37 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 38 H 0.11 1.67 4.52 -2.39 -0.01 1.66 16 39 H 0.09 2.17 8.11 -2.39 -0.02 2.15 16 40 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 41 H 0.13 1.45 7.41 -2.38 -0.02 1.43 16 Total: -1.00 -75.02 359.38 7.63 -67.39 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.08 Total: 5.79 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 5.58 Total: 6.80 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -1.37 Total: -85.89 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.46 Total: -36.81 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -75.02 7.63 -67.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198119759.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.590 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds