Wall clock time and date at job start Tue Mar 31 2020 12:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47480 * 2 1 4 4 O 1.42896 * 109.47430 * 120.00675 * 2 1 3 5 5 C 1.35954 * 117.00002 * 277.16712 * 4 2 1 6 6 C 1.38707 * 120.03116 * 178.78248 * 5 4 2 7 7 C 1.38150 * 119.96482 * 180.29238 * 6 5 4 8 8 C 1.38452 * 120.03061 * 359.44558 * 7 6 5 9 9 F 1.35102 * 119.96400 * 180.27569 * 8 7 6 10 10 C 1.38452 * 120.06328 * 0.25702 * 8 7 6 11 11 C 1.38151 * 120.02728 * 0.02562 * 10 8 7 12 12 C 1.50703 * 109.46846 * 240.00221 * 2 1 3 13 13 O 1.21270 * 120.00161 * 255.25490 * 12 2 1 14 14 N 1.34784 * 119.99725 * 75.25599 * 12 2 1 15 15 C 1.46494 * 119.99936 * 4.85687 * 14 12 2 16 16 C 1.50700 * 109.47203 * 92.60178 * 15 14 12 17 17 H 1.08006 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00369 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99833 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00402 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47015 * 59.99961 * 20 18 16 22 22 H 1.48504 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46991 * 299.99966 * 20 18 16 24 24 C 1.46503 * 119.99576 * 184.85500 * 14 12 2 25 25 C 1.53002 * 109.46496 * 94.37239 * 24 14 12 26 26 C 1.47203 * 109.46564 * 179.97438 * 25 24 14 27 27 N 7.00678 * 92.31840 * 246.99041 * 2 1 3 28 28 H 1.09005 * 109.46754 * 295.78511 * 1 2 3 29 29 H 1.09005 * 109.46982 * 55.77459 * 1 2 3 30 30 H 1.08993 * 109.47419 * 175.78396 * 1 2 3 31 31 H 1.07994 * 120.01693 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.97811 * 179.72014 * 7 6 5 33 33 H 1.07992 * 119.98603 * 180.02562 * 10 8 7 34 34 H 1.08004 * 120.01230 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47057 * 212.59869 * 15 14 12 36 36 H 1.08995 * 109.47525 * 332.60272 * 15 14 12 37 37 H 0.97001 * 120.00200 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.46596 * 214.37050 * 24 14 12 39 39 H 1.08992 * 109.47173 * 334.37367 * 24 14 12 40 40 H 1.08999 * 109.47544 * 299.99230 * 25 24 14 41 41 H 1.08999 * 109.47657 * 60.00071 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0697 0.0508 2.3153 6 6 2.4988 -0.5475 3.4907 7 6 2.5569 0.1885 4.6584 8 6 2.1978 1.5256 4.6532 9 9 2.2604 2.2456 5.7947 10 6 1.7751 2.1257 3.4793 11 6 1.7106 1.3906 2.3114 12 6 2.0323 -0.7104 -1.2305 13 8 2.4864 -1.8313 -1.1407 14 7 1.9768 -0.0999 -2.4309 15 6 1.5280 1.2914 -2.5250 16 6 2.7210 2.2097 -2.4579 17 1 3.7143 1.7980 -2.3558 18 6 2.5447 3.5754 -2.5278 19 7 1.3353 4.0767 -2.6526 20 14 4.0236 4.7136 -2.4454 21 1 4.9434 4.4124 -3.5717 22 1 3.5687 6.1240 -2.5406 23 1 4.7343 4.5091 -1.1576 24 6 2.3653 -0.8278 -3.6415 25 6 1.1219 -1.4408 -4.2889 26 6 1.5122 -2.1717 -5.5056 27 7 1.8134 -2.7366 -6.4440 28 1 -0.3633 0.4471 0.9254 29 1 -0.3633 0.5780 -0.8497 30 1 -0.3634 -1.0248 -0.0755 31 1 2.7834 -1.5893 3.4940 32 1 2.8867 -0.2783 5.5747 33 1 1.4957 3.1689 3.4766 34 1 1.3812 1.8591 1.3957 35 1 1.0065 1.4419 -3.4702 36 1 0.8528 1.5122 -1.6983 37 1 1.2112 5.0375 -2.7015 38 1 2.8386 -0.1404 -4.3425 39 1 3.0666 -1.6200 -3.3798 40 1 0.6486 -2.1283 -3.5879 41 1 0.4204 -0.6487 -4.5507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198119766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:41 Heat of formation + Delta-G solvation = -65.100187 kcal Electronic energy + Delta-G solvation = -26579.477183 eV Core-core repulsion = 22567.703718 eV Total energy + Delta-G solvation = -4011.773465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.78409 -40.48263 -39.19036 -37.17164 -36.60406 -35.36623 -33.09178 -32.34009 -31.20496 -30.49209 -29.12424 -27.41400 -25.09709 -23.86166 -23.29129 -22.76236 -21.64089 -18.85750 -18.37180 -17.60816 -17.26655 -16.92926 -16.53423 -16.13363 -15.65940 -15.49726 -15.30250 -14.79659 -14.65791 -14.59225 -14.20123 -14.01342 -13.69108 -13.33860 -13.07638 -12.87949 -12.81960 -12.50346 -12.40228 -12.26966 -12.21476 -12.11771 -11.73021 -11.57816 -11.45448 -11.13828 -10.94521 -10.81554 -10.74611 -10.56450 -10.29309 -9.95927 -9.27480 -9.16970 -8.72555 -8.08602 -8.02185 -6.37175 -4.45628 1.16657 1.24774 2.72689 2.82633 2.89483 3.14104 3.14744 3.20613 3.24626 3.59648 3.79434 4.19101 4.29306 4.33916 4.70885 4.78401 4.88236 4.97416 5.06641 5.14321 5.20688 5.27334 5.31842 5.34176 5.54906 5.58368 5.77717 5.81024 5.91544 5.97046 6.12354 6.13514 6.17673 6.21763 6.30950 6.44156 6.70279 6.89380 7.19096 7.45451 7.57255 7.65366 7.81755 7.97225 8.54201 8.69640 9.24138 10.69168 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.004325 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.178696 B = 6472.440718 C = 8611.759683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.116 0.884 4 O -0.286 6.286 5 C 0.131 3.869 6 C -0.127 4.127 7 C -0.116 4.116 8 C 0.049 3.951 9 F -0.146 7.146 10 C -0.108 4.108 11 C -0.180 4.180 12 C 0.527 3.473 13 O -0.546 6.546 14 N -0.591 5.591 15 C 0.227 3.773 16 C -0.548 4.548 17 H 0.063 0.937 18 C 0.070 3.930 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.125 3.875 25 C -0.045 4.045 26 C 0.220 3.780 27 N -0.448 5.448 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.268 0.732 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 -3.996 9.323 10.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.004 3.996 3 H 0.134 0.866 4 O -0.198 6.198 5 C 0.085 3.915 6 C -0.146 4.146 7 C -0.134 4.134 8 C 0.029 3.971 9 F -0.125 7.125 10 C -0.127 4.127 11 C -0.198 4.198 12 C 0.314 3.686 13 O -0.424 6.424 14 N -0.322 5.322 15 C 0.107 3.893 16 C -0.587 4.587 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 C 0.000 4.000 25 C -0.087 4.087 26 C -0.098 4.098 27 N -0.125 5.125 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.166 0.834 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.884 -5.410 7.938 10.030 hybrid contribution 0.574 1.552 0.470 1.720 sum -2.310 -3.859 8.408 9.535 Atomic orbital electron populations 1.22344 0.92756 1.03717 1.04340 1.22335 0.95663 0.98430 0.83124 0.86624 1.86177 1.80282 1.38193 1.15171 1.19106 0.95276 0.90274 0.86874 1.20250 1.03759 1.01143 0.89451 1.20879 1.01231 0.92376 0.98953 1.17571 1.06514 0.90414 0.82556 1.91467 1.94675 1.77869 1.48462 1.20962 0.99835 1.00908 0.91018 1.21371 1.05324 0.93433 0.99685 1.19836 0.78623 0.85852 0.84302 1.90654 1.46054 1.19688 1.86004 1.48048 1.64806 1.15101 1.04284 1.19710 0.95924 0.74275 0.99355 1.21449 0.93653 0.91006 1.52572 0.91891 1.24900 0.96091 0.98052 0.94362 1.69882 1.20733 1.13379 1.48533 0.86602 0.82641 0.79561 0.79082 1.19978 1.21012 1.19948 1.21146 0.94388 0.97286 0.87168 1.19769 1.01065 0.99219 0.88617 1.29062 0.93201 0.93231 0.94273 1.81186 1.08874 1.10442 1.12034 0.91070 0.89065 0.91311 0.84203 0.84373 0.84452 0.83421 0.93902 0.93578 0.92215 0.89032 0.89564 0.87409 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 8.91 37.16 0.33 -1.96 16 2 C 0.06 1.03 1.80 -27.88 -0.05 0.97 16 3 H 0.12 1.97 5.09 -51.93 -0.26 1.71 16 4 O -0.29 -4.74 9.39 -39.03 -0.37 -5.10 16 5 C 0.13 1.91 6.52 -39.24 -0.26 1.66 16 6 C -0.13 -1.61 9.99 -39.44 -0.39 -2.00 16 7 C -0.12 -1.33 10.02 -39.53 -0.40 -1.73 16 8 C 0.05 0.62 7.30 -39.42 -0.29 0.33 16 9 F -0.15 -1.90 17.27 2.25 0.04 -1.86 16 10 C -0.11 -1.39 10.02 -39.53 -0.40 -1.79 16 11 C -0.18 -2.49 8.26 -39.44 -0.33 -2.81 16 12 C 0.53 9.48 6.96 -10.98 -0.08 9.40 16 13 O -0.55 -11.13 16.06 -13.87 -0.22 -11.35 16 14 N -0.59 -10.07 2.46 -175.07 -0.43 -10.50 16 15 C 0.23 4.36 4.74 -5.20 -0.02 4.34 16 16 C -0.55 -12.48 9.28 -34.44 -0.32 -12.80 16 17 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 18 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -21.74 13.29 55.43 0.74 -21.00 16 20 Si 0.89 19.06 29.54 -169.99 -5.02 14.04 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 C 0.13 1.85 5.46 -4.04 -0.02 1.83 16 25 C -0.05 -0.53 6.03 -29.52 -0.18 -0.71 16 26 C 0.22 2.99 15.43 -20.76 -0.32 2.67 16 27 N -0.45 -7.19 18.54 42.15 0.78 -6.41 16 28 H 0.07 0.85 7.19 -51.93 -0.37 0.47 16 29 H 0.09 1.18 6.22 -51.93 -0.32 0.86 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.15 2.05 5.65 -52.48 -0.30 1.75 16 35 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 36 H 0.05 0.88 4.51 -51.93 -0.23 0.64 16 37 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 38 H 0.09 1.37 8.10 -51.93 -0.42 0.94 16 39 H 0.09 1.33 7.24 -51.93 -0.38 0.96 16 40 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -27.92 360.84 -6.65 -34.57 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.79 Total: 3.23 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.81 Total: -1.04 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.09 Total: -37.91 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.59 Total: -16.46 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.92 -6.65 -34.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198119766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.535 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds