Wall clock time and date at job start Tue Mar 31 2020 12:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47480 * 2 1 4 4 O 1.42896 * 109.47430 * 120.00675 * 2 1 3 5 5 C 1.35954 * 117.00002 * 277.16712 * 4 2 1 6 6 C 1.38707 * 120.03116 * 178.78248 * 5 4 2 7 7 C 1.38150 * 119.96482 * 180.29238 * 6 5 4 8 8 C 1.38452 * 120.03061 * 359.44558 * 7 6 5 9 9 F 1.35102 * 119.96400 * 180.27569 * 8 7 6 10 10 C 1.38452 * 120.06328 * 0.25702 * 8 7 6 11 11 C 1.38151 * 120.02728 * 0.02562 * 10 8 7 12 12 C 1.50703 * 109.46846 * 240.00221 * 2 1 3 13 13 O 1.21270 * 120.00161 * 255.25490 * 12 2 1 14 14 N 1.34784 * 119.99725 * 75.25599 * 12 2 1 15 15 C 1.46494 * 119.99936 * 4.85687 * 14 12 2 16 16 C 1.50700 * 109.47203 * 92.60178 * 15 14 12 17 17 H 1.08006 * 119.99856 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00369 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99833 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00402 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47015 * 59.99961 * 20 18 16 22 22 H 1.48504 * 109.47183 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46991 * 299.99966 * 20 18 16 24 24 C 1.46503 * 119.99576 * 184.85500 * 14 12 2 25 25 C 1.53002 * 109.46496 * 94.37239 * 24 14 12 26 26 C 1.47203 * 109.46564 * 179.97438 * 25 24 14 27 27 N 7.00678 * 92.31840 * 246.99041 * 2 1 3 28 28 H 1.09005 * 109.46754 * 295.78511 * 1 2 3 29 29 H 1.09005 * 109.46982 * 55.77459 * 1 2 3 30 30 H 1.08993 * 109.47419 * 175.78396 * 1 2 3 31 31 H 1.07994 * 120.01693 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.97811 * 179.72014 * 7 6 5 33 33 H 1.07992 * 119.98603 * 180.02562 * 10 8 7 34 34 H 1.08004 * 120.01230 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47057 * 212.59869 * 15 14 12 36 36 H 1.08995 * 109.47525 * 332.60272 * 15 14 12 37 37 H 0.97001 * 120.00200 * 179.97438 * 19 18 16 38 38 H 1.08999 * 109.46596 * 214.37050 * 24 14 12 39 39 H 1.08992 * 109.47173 * 334.37367 * 24 14 12 40 40 H 1.08999 * 109.47544 * 299.99230 * 25 24 14 41 41 H 1.08999 * 109.47657 * 60.00071 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0697 0.0508 2.3153 6 6 2.4988 -0.5475 3.4907 7 6 2.5569 0.1885 4.6584 8 6 2.1978 1.5256 4.6532 9 9 2.2604 2.2456 5.7947 10 6 1.7751 2.1257 3.4793 11 6 1.7106 1.3906 2.3114 12 6 2.0323 -0.7104 -1.2305 13 8 2.4864 -1.8313 -1.1407 14 7 1.9768 -0.0999 -2.4309 15 6 1.5280 1.2914 -2.5250 16 6 2.7210 2.2097 -2.4579 17 1 3.7143 1.7980 -2.3558 18 6 2.5447 3.5754 -2.5278 19 7 1.3353 4.0767 -2.6526 20 14 4.0236 4.7136 -2.4454 21 1 4.9434 4.4124 -3.5717 22 1 3.5687 6.1240 -2.5406 23 1 4.7343 4.5091 -1.1576 24 6 2.3653 -0.8278 -3.6415 25 6 1.1219 -1.4408 -4.2889 26 6 1.5122 -2.1717 -5.5056 27 7 1.8134 -2.7366 -6.4440 28 1 -0.3633 0.4471 0.9254 29 1 -0.3633 0.5780 -0.8497 30 1 -0.3634 -1.0248 -0.0755 31 1 2.7834 -1.5893 3.4940 32 1 2.8867 -0.2783 5.5747 33 1 1.4957 3.1689 3.4766 34 1 1.3812 1.8591 1.3957 35 1 1.0065 1.4419 -3.4702 36 1 0.8528 1.5122 -1.6983 37 1 1.2112 5.0375 -2.7015 38 1 2.8386 -0.1404 -4.3425 39 1 3.0666 -1.6200 -3.3798 40 1 0.6486 -2.1283 -3.5879 41 1 0.4204 -0.6487 -4.5507 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198119766.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:39 Heat of formation + Delta-G solvation = -77.518045 kcal Electronic energy + Delta-G solvation = -26580.015662 eV Core-core repulsion = 22567.703718 eV Total energy + Delta-G solvation = -4012.311944 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -49.79465 -41.70330 -40.45065 -38.28737 -37.79793 -36.82341 -34.71450 -33.61855 -32.27312 -31.63281 -30.17231 -29.05466 -26.28665 -25.22467 -24.62201 -23.88616 -22.75553 -20.17308 -19.50280 -18.88702 -18.41933 -18.26157 -18.00032 -17.35053 -16.83629 -16.72962 -16.43274 -16.28343 -15.89466 -15.72198 -15.46907 -15.19585 -14.73363 -14.42709 -14.38640 -14.11684 -14.05780 -13.77979 -13.62140 -13.56386 -13.39051 -13.30436 -13.06048 -12.91215 -12.76334 -12.65423 -12.46239 -12.11076 -11.95012 -11.82564 -11.65556 -11.62245 -10.73313 -10.48674 -10.15824 -9.56752 -9.09290 -8.18077 -6.29244 0.18345 0.21470 1.43253 1.45694 1.49055 1.54275 1.55379 1.79699 1.90553 2.40963 2.57580 2.60205 3.13843 3.17492 3.33823 3.52826 3.76672 3.80551 3.95179 4.03319 4.13660 4.16241 4.19857 4.33927 4.53868 4.56660 4.73349 4.75774 4.85293 4.92619 4.95264 5.04195 5.11531 5.14753 5.17726 5.28632 5.35614 5.64037 5.73573 5.82233 6.09751 6.31246 6.49345 6.56107 6.81874 7.21369 7.42875 8.86418 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.010054 B = 0.004325 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.178696 B = 6472.440718 C = 8611.759683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.066 3.934 3 H 0.103 0.897 4 O -0.304 6.304 5 C 0.110 3.890 6 C -0.128 4.128 7 C -0.105 4.105 8 C 0.042 3.958 9 F -0.147 7.147 10 C -0.113 4.113 11 C -0.187 4.187 12 C 0.524 3.476 13 O -0.573 6.573 14 N -0.586 5.586 15 C 0.237 3.763 16 C -0.552 4.552 17 H 0.048 0.952 18 C 0.037 3.963 19 N -0.907 5.907 20 Si 0.935 3.065 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.277 1.277 24 C 0.121 3.879 25 C -0.031 4.031 26 C 0.245 3.755 27 N -0.491 5.491 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.268 0.732 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 -4.015 10.373 11.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 H 0.120 0.880 4 O -0.217 6.217 5 C 0.065 3.935 6 C -0.147 4.147 7 C -0.124 4.124 8 C 0.023 3.977 9 F -0.126 7.126 10 C -0.132 4.132 11 C -0.206 4.206 12 C 0.312 3.688 13 O -0.453 6.453 14 N -0.317 5.317 15 C 0.117 3.883 16 C -0.591 4.591 17 H 0.066 0.934 18 C -0.165 4.165 19 N -0.546 5.546 20 Si 0.762 3.238 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.202 1.202 24 C -0.004 4.004 25 C -0.071 4.071 26 C -0.073 4.073 27 N -0.169 5.169 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.395 -5.425 8.982 11.029 hybrid contribution 0.793 1.559 0.219 1.763 sum -2.602 -3.866 9.201 10.313 Atomic orbital electron populations 1.22296 0.90518 1.04365 1.05098 1.22293 0.97320 0.97141 0.82528 0.87953 1.86136 1.80953 1.38871 1.15705 1.19375 0.96617 0.90704 0.86848 1.20495 1.03151 1.01967 0.89042 1.21166 0.99772 0.91773 0.99649 1.17738 1.06578 0.90977 0.82417 1.91467 1.94690 1.77992 1.48458 1.21119 0.99656 1.01564 0.90818 1.21348 1.05913 0.93398 0.99894 1.20196 0.78079 0.85605 0.84936 1.90635 1.47345 1.20901 1.86411 1.47973 1.64414 1.14403 1.04905 1.19488 0.94647 0.74639 0.99491 1.21669 0.94144 0.91650 1.51635 0.93352 1.25348 0.97496 0.99079 0.94610 1.69926 1.21567 1.13467 1.49650 0.85957 0.80734 0.78505 0.78589 1.20289 1.20815 1.20240 1.21224 0.95767 0.96906 0.86472 1.19723 0.99797 0.99805 0.87819 1.29240 0.91962 0.92189 0.93863 1.81214 1.10137 1.12013 1.13528 0.89853 0.88777 0.90569 0.82774 0.81424 0.83218 0.83957 0.93824 0.92931 0.92280 0.89347 0.90418 0.85756 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.91 71.98 0.64 -3.50 16 2 C 0.07 2.11 1.80 29.85 0.05 2.16 16 3 H 0.10 3.51 5.09 -2.39 -0.01 3.49 16 4 O -0.30 -9.94 9.39 -74.45 -0.70 -10.64 16 5 C 0.11 3.13 6.52 22.49 0.15 3.28 16 6 C -0.13 -3.02 9.99 22.36 0.22 -2.80 16 7 C -0.11 -2.18 10.02 22.30 0.22 -1.96 16 8 C 0.04 1.00 7.30 22.37 0.16 1.16 16 9 F -0.15 -3.56 17.27 44.97 0.78 -2.78 16 10 C -0.11 -2.77 10.02 22.30 0.22 -2.55 16 11 C -0.19 -5.07 8.26 22.36 0.18 -4.88 16 12 C 0.52 18.59 6.96 87.66 0.61 19.20 16 13 O -0.57 -23.18 16.06 15.58 0.25 -22.93 16 14 N -0.59 -19.52 2.46 -826.17 -2.03 -21.55 16 15 C 0.24 8.93 4.74 85.63 0.41 9.34 16 16 C -0.55 -24.93 9.28 25.60 0.24 -24.70 16 17 H 0.05 2.29 7.81 -2.91 -0.02 2.27 16 18 C 0.04 1.71 5.46 84.65 0.46 2.17 16 19 N -0.91 -43.78 13.29 21.45 0.28 -43.50 16 20 Si 0.94 38.70 29.54 68.60 2.03 40.72 16 21 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 24 C 0.12 3.46 5.46 86.38 0.47 3.93 16 25 C -0.03 -0.66 6.03 28.79 0.17 -0.48 16 26 C 0.24 6.32 15.43 89.44 1.38 7.70 16 27 N -0.49 -15.44 18.54 20.01 0.37 -15.07 16 28 H 0.08 1.87 7.19 -2.38 -0.02 1.86 16 29 H 0.09 2.29 6.22 -2.38 -0.01 2.27 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 33 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.14 3.95 5.65 -2.91 -0.02 3.93 16 35 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.05 1.95 4.51 -2.39 -0.01 1.94 16 37 H 0.27 12.54 8.31 -92.71 -0.77 11.77 16 38 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 39 H 0.08 2.38 7.24 -2.39 -0.02 2.36 16 40 H 0.12 2.37 8.14 -2.39 -0.02 2.36 16 41 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -58.46 360.84 7.65 -50.81 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 1.07 Total: 16.87 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 5.60 Total: 8.07 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.37 Total: -80.11 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.45 Total: -33.57 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.72 kcal Total: -58.46 7.65 -50.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198119766.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.709 kcal (2) G-P(sol) polarization free energy of solvation -58.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds