Wall clock time and date at job start Tue Mar 31 2020 13:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86801 * 119.99750 * 2 1 4 4 H 1.48505 * 109.47009 * 240.00199 * 3 2 1 5 5 H 1.48493 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47033 * 120.00183 * 3 2 1 7 7 C 1.40223 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00353 * 196.94003 * 7 2 1 9 9 C 1.41113 * 120.00129 * 16.93917 * 7 2 1 10 10 C 1.40885 * 120.10423 * 204.87592 * 9 7 2 11 11 C 1.36313 * 119.89209 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10789 * 0.02562 * 11 10 9 13 13 C 1.47647 * 119.89880 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99421 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00284 * 180.02562 * 13 12 11 16 16 C 1.46491 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.47025 * 180.02562 * 16 15 13 18 18 N 1.46897 * 109.46868 * 184.70476 * 17 16 15 19 19 C 1.46466 * 111.00418 * 66.89129 * 18 17 16 20 20 C 1.53247 * 109.86173 * 162.23610 * 19 18 17 21 21 S 1.81897 * 108.67440 * 61.89755 * 20 19 18 22 22 C 1.81986 * 101.87690 * 308.96062 * 21 20 19 23 23 C 1.46469 * 111.00021 * 300.90496 * 18 17 16 24 24 C 1.40013 * 120.20960 * 0.23439 * 12 11 10 25 25 C 1.36320 * 120.10314 * 359.47740 * 24 12 11 26 26 H 0.96998 * 120.00133 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.05388 * 0.02562 * 10 9 7 28 28 H 1.08005 * 119.94594 * 180.02562 * 11 10 9 29 29 H 0.97002 * 119.99714 * 359.97438 * 15 13 12 30 30 H 1.09000 * 109.47447 * 59.99921 * 16 15 13 31 31 H 1.08998 * 109.47499 * 299.99907 * 16 15 13 32 32 H 1.08996 * 109.47523 * 64.70170 * 17 16 15 33 33 H 1.09002 * 109.46804 * 304.69834 * 17 16 15 34 34 H 1.08995 * 109.40972 * 42.11258 * 19 18 17 35 35 H 1.09003 * 109.40204 * 282.35062 * 19 18 17 36 36 H 1.09002 * 109.63138 * 181.70500 * 20 19 18 37 37 H 1.09006 * 109.63204 * 302.09484 * 20 19 18 38 38 H 1.08994 * 109.45913 * 291.33682 * 22 21 20 39 39 H 1.09009 * 109.81537 * 170.94358 * 22 21 20 40 40 H 1.09005 * 109.40759 * 317.88823 * 23 18 17 41 41 H 1.09001 * 109.40622 * 77.64772 * 23 18 17 42 42 H 1.07998 * 119.95036 * 179.72187 * 24 12 11 43 43 H 1.08001 * 120.05560 * 180.25623 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6965 -1.2126 5 1 1.2754 2.7464 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0525 -1.2348 0.2720 9 6 1.3480 -2.4098 -0.3571 10 6 1.8252 -3.6482 0.1156 11 6 1.1850 -4.8004 -0.2320 12 6 0.0553 -4.7545 -1.0578 13 6 -0.6342 -6.0053 -1.4319 14 8 -0.2205 -7.0731 -1.0232 15 7 -1.7216 -5.9636 -2.2271 16 6 -2.4060 -7.2047 -2.5977 17 6 -3.5987 -6.8797 -3.4994 18 7 -4.3505 -8.1102 -3.7792 19 6 -4.9851 -8.6255 -2.5639 20 6 -6.0939 -9.6160 -2.9354 21 16 -5.3489 -11.0183 -3.8226 22 6 -4.3729 -10.1739 -5.1057 23 6 -3.5009 -9.1067 -4.4354 24 6 -0.4195 -3.5266 -1.5345 25 6 0.2106 -2.3686 -1.1875 26 1 -0.4850 0.8400 0.0004 27 1 2.6968 -3.6847 0.7523 28 1 1.5498 -5.7502 0.1302 29 1 -2.0514 -5.1117 -2.5534 30 1 -2.7574 -7.7087 -1.6974 31 1 -1.7140 -7.8557 -3.1319 32 1 -3.2404 -6.4519 -4.4357 33 1 -4.2487 -6.1629 -2.9976 34 1 -5.4136 -7.7971 -1.9999 35 1 -4.2381 -9.1310 -1.9518 36 1 -6.5836 -9.9741 -2.0298 37 1 -6.8250 -9.1237 -3.5768 38 1 -5.0456 -9.7009 -5.8211 39 1 -3.7381 -10.8946 -5.6213 40 1 -2.8843 -8.6170 -5.1892 41 1 -2.8570 -9.5787 -3.6933 42 1 -1.2886 -3.4964 -2.1749 43 1 -0.1587 -1.4216 -1.5523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270424742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:36 Heat of formation + Delta-G solvation = -20.323526 kcal Electronic energy + Delta-G solvation = -23587.946863 eV Core-core repulsion = 20144.328236 eV Total energy + Delta-G solvation = -3443.618627 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.49885 -38.59022 -37.11316 -34.44169 -33.90993 -31.92945 -31.45123 -30.13613 -29.48420 -27.40621 -25.65937 -23.95064 -23.49377 -21.90637 -21.03386 -20.60441 -19.67838 -17.57588 -17.29533 -16.64794 -16.27347 -15.94188 -15.48572 -15.13425 -14.96878 -14.47673 -14.12496 -14.09054 -13.97449 -13.44056 -13.33823 -13.25987 -12.76561 -12.75580 -12.51370 -12.24501 -12.12683 -12.04023 -11.93802 -11.43407 -11.29765 -11.21383 -11.09193 -11.01242 -10.67851 -10.10569 -10.02153 -9.60179 -9.39954 -9.11869 -8.73386 -8.69701 -7.97585 -7.76819 -7.58482 -7.06886 -4.64761 1.48198 2.18456 2.21617 2.89685 2.91619 2.95404 2.99319 3.28781 3.70454 3.81936 3.83498 4.45658 4.48042 4.52198 4.72959 4.76062 4.82660 4.93367 5.00271 5.04925 5.32015 5.35538 5.37161 5.47789 5.52438 5.58841 5.73650 5.78468 5.98676 6.07248 6.27503 6.50896 6.63040 6.72739 6.78640 6.85916 7.00470 7.09145 7.39066 7.60022 7.74090 7.81530 8.02826 8.16014 8.35558 8.58909 8.70881 9.00593 9.84817 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.002093 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.391453 B =13371.999128 C =13807.519726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.441 4.441 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.571 3.429 14 O -0.576 6.576 15 N -0.740 5.740 16 C 0.089 3.911 17 C 0.049 3.951 18 N -0.542 5.542 19 C 0.049 3.951 20 C -0.073 4.073 21 S -0.277 6.277 22 C -0.073 4.073 23 C 0.049 3.951 24 C -0.063 4.063 25 C -0.178 4.178 26 H 0.287 0.713 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.398 0.602 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 -9.358 -8.566 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.258 4.258 11 C -0.041 4.041 12 C -0.290 4.290 13 C 0.366 3.634 14 O -0.458 6.458 15 N -0.394 5.394 16 C -0.037 4.037 17 C -0.080 4.080 18 N -0.266 5.266 19 C -0.081 4.081 20 C -0.222 4.222 21 S -0.051 6.051 22 C -0.222 4.222 23 C -0.080 4.080 24 C -0.082 4.082 25 C -0.197 4.197 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.233 0.767 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.180 -10.974 -8.405 17.778 hybrid contribution 0.797 2.225 0.218 2.374 sum -10.382 -8.749 -8.187 15.854 Atomic orbital electron populations 1.69727 1.07901 1.30169 1.31765 1.26106 0.94845 1.01910 0.91897 0.86242 0.80187 0.79375 0.80368 1.18463 1.20033 1.18639 1.19829 0.98106 0.91087 1.37876 0.89725 1.17795 0.90485 0.92176 0.87058 1.20723 1.04448 0.92678 1.07962 1.20363 0.92897 0.97126 0.93737 1.18877 1.04260 0.90988 1.14853 1.18624 0.78665 0.89671 0.76422 1.90637 1.66699 1.32119 1.56307 1.45790 1.31261 1.08730 1.53635 1.21884 0.94431 0.88559 0.98821 1.22442 0.93651 0.91887 0.99976 1.61442 1.33169 1.05875 1.26126 1.22301 0.96206 0.98288 0.91276 1.23497 0.99899 0.95952 1.02805 1.87000 1.62003 1.16348 1.39772 1.23512 1.00531 0.99953 0.98159 1.22293 0.94133 0.92755 0.98865 1.20465 0.97370 0.92584 0.97779 1.20997 0.99765 0.96903 1.02038 0.90153 0.88354 0.88142 0.76655 0.92184 0.92087 0.89586 0.89635 0.89295 0.92675 0.87449 0.89014 0.89040 0.87434 0.89309 0.92613 0.89347 0.86082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.19 10.91 55.56 0.61 -17.58 16 2 C 0.07 1.69 5.15 -17.31 -0.09 1.60 16 3 Si 0.91 17.00 29.59 -169.99 -5.03 11.96 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.28 -4.98 7.11 56.52 0.40 -4.57 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.44 -10.82 9.05 -37.75 -0.34 -11.16 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.56 16 9 C 0.13 3.22 5.58 -106.80 -0.60 2.63 16 10 C -0.24 -5.72 9.73 -39.27 -0.38 -6.11 16 11 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 12 C -0.29 -6.42 5.89 -104.73 -0.62 -7.03 16 13 C 0.57 11.96 7.76 -12.42 -0.10 11.86 16 14 O -0.58 -13.69 16.32 5.29 0.09 -13.60 16 15 N -0.74 -11.76 5.50 -61.31 -0.34 -12.09 16 16 C 0.09 1.17 5.04 -4.04 -0.02 1.15 16 17 C 0.05 0.46 5.35 -3.82 -0.02 0.44 16 18 N -0.54 -4.94 4.58 -235.04 -1.08 -6.02 16 19 C 0.05 0.43 4.71 -3.93 -0.02 0.41 16 20 C -0.07 -0.59 6.68 37.29 0.25 -0.35 16 21 S -0.28 -2.70 22.42 -107.50 -2.41 -5.11 16 22 C -0.07 -0.59 6.68 37.29 0.25 -0.34 16 23 C 0.05 0.43 4.44 -3.93 -0.02 0.41 16 24 C -0.06 -1.36 9.47 -39.61 -0.38 -1.73 16 25 C -0.18 -4.27 8.63 -39.27 -0.34 -4.61 16 26 H 0.29 6.09 8.29 -40.82 -0.34 5.75 16 27 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 28 H 0.10 2.29 7.63 -52.48 -0.40 1.89 16 29 H 0.40 5.52 6.47 -40.82 -0.26 5.25 16 30 H 0.06 0.86 6.79 -51.93 -0.35 0.51 16 31 H 0.06 0.86 7.06 -51.93 -0.37 0.49 16 32 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.09 0.77 7.91 -51.93 -0.41 0.36 16 34 H 0.09 0.72 7.81 -51.93 -0.41 0.32 16 35 H 0.06 0.57 7.07 -51.93 -0.37 0.20 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.09 0.71 7.92 -51.93 -0.41 0.30 16 41 H 0.06 0.57 7.21 -51.93 -0.37 0.20 16 42 H 0.09 1.59 6.37 -52.49 -0.33 1.25 16 43 H 0.12 2.94 6.14 -52.49 -0.32 2.62 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -28.49 357.63 -11.66 -40.15 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.09 Total: 10.62 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.79 Total: -13.71 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.81 Total: -35.70 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.09 Total: -13.60 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.96 kcal Atomic # 16 Polarization: -2.70 SS G_CDS: -2.41 Total: -5.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.49 -11.66 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270424742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.825 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds