Wall clock time and date at job start Tue Mar 31 2020 13:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86801 * 119.99750 * 2 1 4 4 H 1.48505 * 109.47009 * 240.00199 * 3 2 1 5 5 H 1.48493 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47033 * 120.00183 * 3 2 1 7 7 C 1.40223 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00353 * 196.94003 * 7 2 1 9 9 C 1.41113 * 120.00129 * 16.93917 * 7 2 1 10 10 C 1.40885 * 120.10423 * 204.87592 * 9 7 2 11 11 C 1.36313 * 119.89209 * 180.02562 * 10 9 7 12 12 C 1.40010 * 120.10789 * 0.02562 * 11 10 9 13 13 C 1.47647 * 119.89880 * 179.97438 * 12 11 10 14 14 O 1.21588 * 119.99421 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00284 * 180.02562 * 13 12 11 16 16 C 1.46491 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.47025 * 180.02562 * 16 15 13 18 18 N 1.46897 * 109.46868 * 184.70476 * 17 16 15 19 19 C 1.46466 * 111.00418 * 66.89129 * 18 17 16 20 20 C 1.53247 * 109.86173 * 162.23610 * 19 18 17 21 21 S 1.81897 * 108.67440 * 61.89755 * 20 19 18 22 22 C 1.81986 * 101.87690 * 308.96062 * 21 20 19 23 23 C 1.46469 * 111.00021 * 300.90496 * 18 17 16 24 24 C 1.40013 * 120.20960 * 0.23439 * 12 11 10 25 25 C 1.36320 * 120.10314 * 359.47740 * 24 12 11 26 26 H 0.96998 * 120.00133 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.05388 * 0.02562 * 10 9 7 28 28 H 1.08005 * 119.94594 * 180.02562 * 11 10 9 29 29 H 0.97002 * 119.99714 * 359.97438 * 15 13 12 30 30 H 1.09000 * 109.47447 * 59.99921 * 16 15 13 31 31 H 1.08998 * 109.47499 * 299.99907 * 16 15 13 32 32 H 1.08996 * 109.47523 * 64.70170 * 17 16 15 33 33 H 1.09002 * 109.46804 * 304.69834 * 17 16 15 34 34 H 1.08995 * 109.40972 * 42.11258 * 19 18 17 35 35 H 1.09003 * 109.40204 * 282.35062 * 19 18 17 36 36 H 1.09002 * 109.63138 * 181.70500 * 20 19 18 37 37 H 1.09006 * 109.63204 * 302.09484 * 20 19 18 38 38 H 1.08994 * 109.45913 * 291.33682 * 22 21 20 39 39 H 1.09009 * 109.81537 * 170.94358 * 22 21 20 40 40 H 1.09005 * 109.40759 * 317.88823 * 23 18 17 41 41 H 1.09001 * 109.40622 * 77.64772 * 23 18 17 42 42 H 1.07998 * 119.95036 * 179.72187 * 24 12 11 43 43 H 1.08001 * 120.05560 * 180.25623 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.0941 1.6965 -1.2126 5 1 1.2754 2.7464 -0.0006 6 1 3.0942 1.6964 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0525 -1.2348 0.2720 9 6 1.3480 -2.4098 -0.3571 10 6 1.8252 -3.6482 0.1156 11 6 1.1850 -4.8004 -0.2320 12 6 0.0553 -4.7545 -1.0578 13 6 -0.6342 -6.0053 -1.4319 14 8 -0.2205 -7.0731 -1.0232 15 7 -1.7216 -5.9636 -2.2271 16 6 -2.4060 -7.2047 -2.5977 17 6 -3.5987 -6.8797 -3.4994 18 7 -4.3505 -8.1102 -3.7792 19 6 -4.9851 -8.6255 -2.5639 20 6 -6.0939 -9.6160 -2.9354 21 16 -5.3489 -11.0183 -3.8226 22 6 -4.3729 -10.1739 -5.1057 23 6 -3.5009 -9.1067 -4.4354 24 6 -0.4195 -3.5266 -1.5345 25 6 0.2106 -2.3686 -1.1875 26 1 -0.4850 0.8400 0.0004 27 1 2.6968 -3.6847 0.7523 28 1 1.5498 -5.7502 0.1302 29 1 -2.0514 -5.1117 -2.5534 30 1 -2.7574 -7.7087 -1.6974 31 1 -1.7140 -7.8557 -3.1319 32 1 -3.2404 -6.4519 -4.4357 33 1 -4.2487 -6.1629 -2.9976 34 1 -5.4136 -7.7971 -1.9999 35 1 -4.2381 -9.1310 -1.9518 36 1 -6.5836 -9.9741 -2.0298 37 1 -6.8250 -9.1237 -3.5768 38 1 -5.0456 -9.7009 -5.8211 39 1 -3.7381 -10.8946 -5.6213 40 1 -2.8843 -8.6170 -5.1892 41 1 -2.8570 -9.5787 -3.6933 42 1 -1.2886 -3.4964 -2.1749 43 1 -0.1587 -1.4216 -1.5523 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270424742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:35 Heat of formation + Delta-G solvation = -37.210015 kcal Electronic energy + Delta-G solvation = -23588.679116 eV Core-core repulsion = 20144.328236 eV Total energy + Delta-G solvation = -3444.350880 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90976 -39.67458 -38.81497 -35.79554 -35.67159 -32.64562 -32.59964 -31.63165 -31.29236 -28.63670 -27.18800 -24.64154 -24.48987 -23.51920 -22.76697 -21.51790 -21.25835 -19.37251 -18.57429 -17.69773 -17.50246 -17.03558 -16.78063 -16.20749 -16.13738 -15.76166 -15.56633 -15.14472 -15.06507 -15.01210 -14.50712 -14.41275 -14.18250 -13.85532 -13.69468 -13.58701 -13.36336 -13.19580 -12.97186 -12.84838 -12.81668 -12.64803 -12.37406 -12.07749 -11.79709 -11.76889 -11.37612 -11.13008 -10.81817 -10.70607 -10.12808 -9.58168 -9.56893 -9.41175 -8.79183 -8.73707 -6.49145 0.42737 0.80467 1.14379 1.39257 1.44484 1.52239 1.54816 2.10673 2.17595 2.24548 2.77721 2.78865 3.68115 3.69740 3.79503 3.90844 3.95445 4.13376 4.19069 4.27061 4.30643 4.31915 4.36558 4.42677 4.46472 4.67333 4.70589 4.77472 4.83698 4.89592 4.91828 5.00096 5.03014 5.15202 5.29493 5.46167 5.58116 5.80309 5.83164 5.88708 5.93753 5.98628 6.22308 6.53348 6.67461 6.76659 6.88292 7.40750 8.15551 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.002093 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.391453 B =13371.999128 C =13807.519726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.038 3.962 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.473 4.473 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.254 4.254 11 C -0.035 4.035 12 C -0.294 4.294 13 C 0.570 3.430 14 O -0.609 6.609 15 N -0.720 5.720 16 C 0.092 3.908 17 C 0.060 3.940 18 N -0.537 5.537 19 C 0.048 3.952 20 C -0.061 4.061 21 S -0.324 6.324 22 C -0.061 4.061 23 C 0.048 3.952 24 C -0.052 4.052 25 C -0.198 4.198 26 H 0.297 0.703 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.411 0.589 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.037 0.963 42 H 0.128 0.872 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.089 -8.189 -9.901 17.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.500 4.500 8 H 0.103 0.897 9 C 0.097 3.903 10 C -0.273 4.273 11 C -0.054 4.054 12 C -0.298 4.298 13 C 0.364 3.636 14 O -0.494 6.494 15 N -0.373 5.373 16 C -0.033 4.033 17 C -0.069 4.069 18 N -0.260 5.260 19 C -0.081 4.081 20 C -0.209 4.209 21 S -0.099 6.099 22 C -0.209 4.209 23 C -0.081 4.081 24 C -0.071 4.071 25 C -0.217 4.217 26 H 0.109 0.891 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.249 0.751 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.055 0.945 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.056 0.944 42 H 0.146 0.854 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -12.577 -9.813 -9.766 18.704 hybrid contribution 1.158 1.762 0.628 2.200 sum -11.419 -8.051 -9.138 16.694 Atomic orbital electron populations 1.69743 1.09146 1.31698 1.31489 1.26914 0.95596 1.04768 0.90858 0.85156 0.78856 0.75005 0.80255 1.18222 1.18724 1.18412 1.20093 0.98435 0.92124 1.39320 0.89741 1.18155 0.91467 0.92799 0.87868 1.20852 1.05025 0.92846 1.08593 1.20509 0.93639 0.96920 0.94327 1.19163 1.04047 0.92254 1.14380 1.18451 0.79703 0.88462 0.76997 1.90621 1.67983 1.32950 1.57855 1.45600 1.29531 1.10522 1.51640 1.22039 0.95338 0.87018 0.98954 1.22432 0.92217 0.92380 0.99850 1.61529 1.32695 1.05855 1.25937 1.22326 0.96020 0.98689 0.91112 1.23495 0.99515 0.94781 1.03110 1.87178 1.62876 1.18590 1.41216 1.23515 1.00293 0.99723 0.97359 1.22318 0.94158 0.92908 0.98728 1.20742 0.97854 0.91288 0.97168 1.21050 1.00275 0.97543 1.02815 0.89124 0.87922 0.88202 0.75135 0.93430 0.92951 0.88049 0.88319 0.88128 0.94480 0.86412 0.88207 0.88225 0.86328 0.88062 0.94422 0.85427 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.26 10.91 21.87 0.24 -37.02 16 2 C 0.04 1.72 5.15 85.35 0.44 2.16 16 3 Si 0.99 34.10 29.59 68.60 2.03 36.13 16 4 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 5 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 6 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.47 -23.54 9.05 23.46 0.21 -23.33 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.10 5.15 5.58 -21.28 -0.12 5.03 16 10 C -0.25 -12.53 9.73 22.47 0.22 -12.31 16 11 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 12 C -0.29 -13.14 5.89 -19.93 -0.12 -13.25 16 13 C 0.57 23.46 7.76 86.73 0.67 24.13 16 14 O -0.61 -29.08 16.32 -3.99 -0.07 -29.14 16 15 N -0.72 -21.45 5.50 -466.16 -2.57 -24.01 16 16 C 0.09 2.26 5.04 86.38 0.44 2.70 16 17 C 0.06 0.96 5.35 86.31 0.46 1.42 16 18 N -0.54 -8.53 4.58 -897.52 -4.12 -12.65 16 19 C 0.05 0.77 4.71 86.47 0.41 1.18 16 20 C -0.06 -0.89 6.68 72.06 0.48 -0.41 16 21 S -0.32 -6.05 22.42 -56.49 -1.27 -7.31 16 22 C -0.06 -0.88 6.68 72.07 0.48 -0.40 16 23 C 0.05 0.77 4.44 86.47 0.38 1.15 16 24 C -0.05 -2.17 9.47 22.25 0.21 -1.96 16 25 C -0.20 -9.50 8.63 22.47 0.19 -9.31 16 26 H 0.30 12.34 8.29 -92.71 -0.77 11.57 16 27 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.10 4.69 7.63 -2.91 -0.02 4.67 16 29 H 0.41 10.11 6.47 -92.71 -0.60 9.51 16 30 H 0.05 1.32 6.79 -2.39 -0.02 1.31 16 31 H 0.05 1.41 7.06 -2.39 -0.02 1.40 16 32 H 0.10 1.40 8.09 -2.39 -0.02 1.39 16 33 H 0.10 1.40 7.91 -2.39 -0.02 1.39 16 34 H 0.10 1.40 7.81 -2.39 -0.02 1.38 16 35 H 0.04 0.74 7.07 -2.39 -0.02 0.73 16 36 H 0.12 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.10 1.38 7.92 -2.38 -0.02 1.36 16 41 H 0.04 0.75 7.21 -2.39 -0.02 0.73 16 42 H 0.13 4.22 6.37 -2.91 -0.02 4.20 16 43 H 0.12 5.64 6.14 -2.91 -0.02 5.62 16 Total: -1.00 -62.39 357.63 -0.74 -63.13 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: 0.43 Total: 35.52 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: 4.58 Total: -24.64 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -6.44 Total: -73.68 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.07 Total: -29.14 kcal Atomic # 14 Polarization: 34.10 SS G_CDS: 2.03 Total: 36.13 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -1.27 Total: -7.31 kcal Total: -62.39 -0.74 -63.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270424742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.917 kcal (2) G-P(sol) polarization free energy of solvation -62.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds