Wall clock time and date at job start Tue Mar 31 2020 13:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47117 * 269.99537 * 3 2 1 5 5 H 1.48507 * 109.47240 * 29.99635 * 3 2 1 6 6 H 1.48496 * 109.47366 * 149.99678 * 3 2 1 7 7 C 1.37879 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46889 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99899 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99909 * 5.15437 * 12 11 10 14 14 N 1.34784 * 120.00103 * 185.14985 * 12 11 10 15 15 C 1.46378 * 119.64528 * 5.86737 * 14 12 11 16 16 C 1.53238 * 109.48724 * 114.93572 * 15 14 12 17 17 S 1.81739 * 108.79834 * 57.65446 * 16 15 14 18 18 C 1.81745 * 102.30569 * 305.46014 * 17 16 15 19 19 C 1.46372 * 119.64410 * 185.89064 * 14 12 11 20 20 H 1.09006 * 109.46717 * 125.06514 * 19 14 12 21 21 C 1.50701 * 109.47298 * 5.06923 * 19 14 12 22 22 C 1.38237 * 119.99776 * 264.67216 * 21 19 14 23 23 C 1.38238 * 119.99727 * 179.73725 * 22 21 19 24 24 C 1.38238 * 119.99774 * 0.56067 * 23 22 21 25 25 C 1.38235 * 119.99934 * 359.69727 * 24 23 22 26 26 C 1.38229 * 120.00345 * 0.02562 * 25 24 23 27 27 H 0.97007 * 119.99711 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47282 * 59.99639 * 9 7 2 29 29 H 1.09001 * 109.47331 * 299.99747 * 9 7 2 30 30 H 1.08997 * 109.47057 * 60.00243 * 10 9 7 31 31 H 1.08998 * 109.46983 * 299.99684 * 10 9 7 32 32 H 0.97003 * 120.00368 * 0.02562 * 11 10 9 33 33 H 1.09002 * 109.46255 * 234.94310 * 15 14 12 34 34 H 1.09002 * 109.46623 * 354.92689 * 15 14 12 35 35 H 1.09001 * 109.58154 * 177.45063 * 16 15 14 36 36 H 1.08998 * 109.58201 * 297.86055 * 16 15 14 37 37 H 1.08995 * 109.58112 * 294.74387 * 18 17 16 38 38 H 1.09001 * 109.58209 * 174.33606 * 18 17 16 39 39 H 1.08003 * 120.00408 * 359.97438 * 22 21 19 40 40 H 1.08000 * 120.00247 * 180.27941 * 23 22 21 41 41 H 1.07995 * 119.99759 * 179.71876 * 24 23 22 42 42 H 1.08004 * 119.99826 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.00360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9307 0.0012 12 6 2.1864 -6.0980 0.0007 13 8 3.3987 -6.1001 0.0945 14 7 1.5165 -7.2629 -0.1035 15 6 0.0729 -7.2488 -0.3450 16 6 -0.2217 -7.8615 -1.7183 17 16 0.4511 -9.5492 -1.7630 18 6 2.1899 -9.2854 -1.3048 19 6 2.2403 -8.5285 0.0266 20 1 1.7771 -9.1334 0.8062 21 6 3.6756 -8.2510 0.3926 22 6 4.6409 -8.1881 -0.5949 23 6 5.9566 -7.9282 -0.2598 24 6 6.3089 -7.7427 1.0640 25 6 5.3445 -7.8108 2.0520 26 6 4.0279 -8.0650 1.7163 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.5426 -4.9307 0.0011 33 1 -0.4304 -7.8299 0.4277 34 1 -0.2895 -6.2210 -0.3204 35 1 -1.2990 -7.8932 -1.8807 36 1 0.2494 -7.2598 -2.4955 37 1 2.6863 -8.6986 -2.0777 38 1 2.6894 -10.2482 -1.1969 39 1 4.3666 -8.3383 -1.6287 40 1 6.7101 -7.8746 -1.0317 41 1 7.3376 -7.5441 1.3263 42 1 5.6197 -7.6654 3.0862 43 1 3.2744 -8.1187 2.4882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273274842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:35 Heat of formation + Delta-G solvation = 20.060571 kcal Electronic energy + Delta-G solvation = -25065.742572 eV Core-core repulsion = 21623.875131 eV Total energy + Delta-G solvation = -3441.867441 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.77211 -38.58038 -36.53621 -35.02090 -33.48231 -32.51366 -30.79042 -30.42911 -29.34548 -28.95988 -25.04016 -24.21245 -23.40715 -22.26217 -21.61938 -20.75248 -19.63526 -18.24364 -16.71126 -16.50451 -16.33691 -16.12774 -15.59142 -14.98039 -14.81440 -14.56779 -14.43158 -14.37409 -13.92530 -13.81413 -13.42886 -13.10535 -13.07290 -12.95056 -12.57597 -12.40544 -12.27988 -11.93610 -11.60095 -11.20332 -11.05966 -10.85925 -10.77580 -10.64998 -10.36568 -10.19832 -10.05641 -9.61832 -9.32132 -9.02791 -8.59428 -8.49261 -8.30796 -7.95644 -7.83215 -6.11957 -4.14589 1.42561 1.60300 1.73036 2.20058 2.78184 3.27732 3.34034 3.38465 3.44602 3.96953 4.18757 4.35333 4.40691 4.62567 4.70763 4.75821 4.80721 4.94994 5.11861 5.20837 5.24985 5.25408 5.29651 5.33254 5.47987 5.56612 5.71943 5.86925 6.15298 6.22813 6.28851 6.35643 6.41861 6.68865 6.73256 6.74393 6.80425 6.94156 7.00037 7.29234 7.51240 7.58932 7.86842 8.18765 8.30319 8.87256 8.92904 9.50406 10.99695 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.003700 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.583806 B = 7566.320756 C = 9269.506555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.141 3.859 11 N -0.739 5.739 12 C 0.694 3.306 13 O -0.554 6.554 14 N -0.636 5.636 15 C 0.111 3.889 16 C -0.101 4.101 17 S -0.258 6.258 18 C -0.096 4.096 19 C 0.204 3.796 20 H 0.092 0.908 21 C -0.024 4.024 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.111 4.111 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.390 0.610 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 -21.054 -0.512 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.395 5.395 12 C 0.396 3.604 13 O -0.431 6.431 14 N -0.376 5.376 15 C -0.014 4.014 16 C -0.251 4.251 17 S -0.030 6.030 18 C -0.246 4.246 19 C 0.098 3.902 20 H 0.110 0.890 21 C -0.026 4.026 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.129 4.129 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.226 0.774 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.373 -21.853 -0.733 21.993 hybrid contribution 0.359 2.282 0.133 2.314 sum 2.732 -19.570 -0.601 19.769 Atomic orbital electron populations 1.69955 1.06093 1.26871 1.50422 1.24985 0.94883 0.99391 0.94958 0.86517 0.79873 0.82998 0.78210 1.20558 1.21148 1.19708 1.21034 0.93237 0.90330 1.51311 0.92271 1.19313 0.94231 0.91149 0.97669 1.21575 0.95594 0.80377 1.00574 1.45859 1.09789 1.05390 1.78430 1.16175 0.85677 0.80340 0.78220 1.91063 1.11115 1.84045 1.56833 1.47322 1.07611 1.04590 1.78052 1.21694 0.81456 1.02698 0.95580 1.23896 1.04804 0.95353 1.01027 1.86834 1.10601 1.13797 1.91774 1.24063 0.95095 1.04779 1.00621 1.19931 0.90559 0.84110 0.95552 0.88992 1.19143 0.92417 0.97072 0.94004 1.20685 0.93071 1.00246 0.97803 1.20885 0.95964 0.99982 0.96064 1.20926 0.98888 1.01715 0.93260 1.20874 0.93169 1.00040 0.98761 1.20639 0.96184 1.01087 0.95040 0.92852 0.96135 0.96043 0.92720 0.92967 0.77418 0.89773 0.88663 0.86470 0.89199 0.88854 0.86568 0.87175 0.86992 0.87027 0.86941 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 10 C 0.14 2.98 5.62 -4.04 -0.02 2.96 16 11 N -0.74 -12.65 5.43 -65.23 -0.35 -13.01 16 12 C 0.69 11.45 8.10 -86.91 -0.70 10.74 16 13 O -0.55 -10.62 11.25 5.29 0.06 -10.56 16 14 N -0.64 -7.96 2.79 -173.02 -0.48 -8.45 16 15 C 0.11 1.08 6.22 -3.98 -0.02 1.05 16 16 C -0.10 -0.92 6.67 37.28 0.25 -0.67 16 17 S -0.26 -2.56 22.29 -107.50 -2.40 -4.96 16 18 C -0.10 -0.95 5.16 37.28 0.19 -0.76 16 19 C 0.20 2.31 2.96 -69.03 -0.20 2.11 16 20 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 21 C -0.02 -0.32 2.87 -104.62 -0.30 -0.62 16 22 C -0.10 -1.34 7.66 -39.58 -0.30 -1.64 16 23 C -0.11 -1.48 10.05 -39.58 -0.40 -1.88 16 24 C -0.13 -1.72 10.05 -39.58 -0.40 -2.11 16 25 C -0.11 -1.49 10.05 -39.59 -0.40 -1.88 16 26 C -0.11 -1.52 8.65 -39.59 -0.34 -1.86 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.39 5.84 5.88 -40.82 -0.24 5.60 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.91 5.44 -51.93 -0.28 0.63 16 35 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.02 6.45 -51.93 -0.33 0.68 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.11 1.35 5.99 -52.48 -0.31 1.04 16 40 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 41 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 43 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -31.41 354.91 -11.53 -42.93 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.21 Total: 5.04 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.21 Total: -7.45 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.10 Total: -46.62 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.06 Total: -10.56 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.40 Total: -4.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.41 -11.53 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273274842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.995 kcal (2) G-P(sol) polarization free energy of solvation -31.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds