Wall clock time and date at job start Tue Mar 31 2020 13:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47117 * 269.99537 * 3 2 1 5 5 H 1.48507 * 109.47240 * 29.99635 * 3 2 1 6 6 H 1.48496 * 109.47366 * 149.99678 * 3 2 1 7 7 C 1.37879 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46889 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.46867 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99899 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99909 * 5.15437 * 12 11 10 14 14 N 1.34784 * 120.00103 * 185.14985 * 12 11 10 15 15 C 1.46378 * 119.64528 * 5.86737 * 14 12 11 16 16 C 1.53238 * 109.48724 * 114.93572 * 15 14 12 17 17 S 1.81739 * 108.79834 * 57.65446 * 16 15 14 18 18 C 1.81745 * 102.30569 * 305.46014 * 17 16 15 19 19 C 1.46372 * 119.64410 * 185.89064 * 14 12 11 20 20 H 1.09006 * 109.46717 * 125.06514 * 19 14 12 21 21 C 1.50701 * 109.47298 * 5.06923 * 19 14 12 22 22 C 1.38237 * 119.99776 * 264.67216 * 21 19 14 23 23 C 1.38238 * 119.99727 * 179.73725 * 22 21 19 24 24 C 1.38238 * 119.99774 * 0.56067 * 23 22 21 25 25 C 1.38235 * 119.99934 * 359.69727 * 24 23 22 26 26 C 1.38229 * 120.00345 * 0.02562 * 25 24 23 27 27 H 0.97007 * 119.99711 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.47282 * 59.99639 * 9 7 2 29 29 H 1.09001 * 109.47331 * 299.99747 * 9 7 2 30 30 H 1.08997 * 109.47057 * 60.00243 * 10 9 7 31 31 H 1.08998 * 109.46983 * 299.99684 * 10 9 7 32 32 H 0.97003 * 120.00368 * 0.02562 * 11 10 9 33 33 H 1.09002 * 109.46255 * 234.94310 * 15 14 12 34 34 H 1.09002 * 109.46623 * 354.92689 * 15 14 12 35 35 H 1.09001 * 109.58154 * 177.45063 * 16 15 14 36 36 H 1.08998 * 109.58201 * 297.86055 * 16 15 14 37 37 H 1.08995 * 109.58112 * 294.74387 * 18 17 16 38 38 H 1.09001 * 109.58209 * 174.33606 * 18 17 16 39 39 H 1.08003 * 120.00408 * 359.97438 * 22 21 19 40 40 H 1.08000 * 120.00247 * 180.27941 * 23 22 21 41 41 H 1.07995 * 119.99759 * 179.71876 * 24 23 22 42 42 H 1.08004 * 119.99826 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.00360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9307 0.0012 12 6 2.1864 -6.0980 0.0007 13 8 3.3987 -6.1001 0.0945 14 7 1.5165 -7.2629 -0.1035 15 6 0.0729 -7.2488 -0.3450 16 6 -0.2217 -7.8615 -1.7183 17 16 0.4511 -9.5492 -1.7630 18 6 2.1899 -9.2854 -1.3048 19 6 2.2403 -8.5285 0.0266 20 1 1.7771 -9.1334 0.8062 21 6 3.6756 -8.2510 0.3926 22 6 4.6409 -8.1881 -0.5949 23 6 5.9566 -7.9282 -0.2598 24 6 6.3089 -7.7427 1.0640 25 6 5.3445 -7.8108 2.0520 26 6 4.0279 -8.0650 1.7163 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5570 -0.8897 29 1 0.6239 -2.5567 0.8903 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6043 -0.8895 32 1 0.5426 -4.9307 0.0011 33 1 -0.4304 -7.8299 0.4277 34 1 -0.2895 -6.2210 -0.3204 35 1 -1.2990 -7.8932 -1.8807 36 1 0.2494 -7.2598 -2.4955 37 1 2.6863 -8.6986 -2.0777 38 1 2.6894 -10.2482 -1.1969 39 1 4.3666 -8.3383 -1.6287 40 1 6.7101 -7.8746 -1.0317 41 1 7.3376 -7.5441 1.3263 42 1 5.6197 -7.6654 3.0862 43 1 3.2744 -8.1187 2.4882 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273274842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:34 Heat of formation + Delta-G solvation = 3.197252 kcal Electronic energy + Delta-G solvation = -25066.473820 eV Core-core repulsion = 21623.875131 eV Total energy + Delta-G solvation = -3442.598690 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90301 -39.67672 -37.66546 -36.55656 -35.05617 -33.92175 -31.82895 -31.66267 -30.70590 -30.02489 -26.80067 -25.23932 -24.43203 -23.26599 -23.14459 -22.12173 -20.85143 -19.36577 -18.49071 -17.66982 -17.38199 -17.25473 -16.66098 -16.48987 -16.04577 -15.87040 -15.66205 -15.55673 -15.03910 -14.81885 -14.64905 -14.39756 -14.26442 -14.05349 -13.85956 -13.62199 -13.36411 -13.17157 -12.93852 -12.75390 -12.53270 -12.41833 -12.23657 -11.79824 -11.73560 -11.63679 -11.49299 -11.25111 -10.88450 -10.60725 -10.20199 -9.72687 -9.55276 -9.00367 -8.69448 -8.24768 -6.34774 0.53380 0.68510 0.73165 1.41143 1.41445 1.42320 1.52765 1.67850 2.16440 2.39631 2.83731 3.10305 3.14174 3.51912 3.72062 3.80647 3.91869 4.02895 4.16959 4.21235 4.25894 4.34401 4.41371 4.48218 4.51928 4.59257 4.62873 4.75112 4.80630 4.86208 4.91704 5.22435 5.29544 5.30020 5.42628 5.52026 5.58656 5.66482 5.73619 5.76651 5.78773 5.85556 6.16750 6.30727 6.78095 6.96855 7.34640 7.59394 8.87020 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.003700 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.583806 B = 7566.320756 C = 9269.506555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.167 3.833 11 N -0.736 5.736 12 C 0.693 3.307 13 O -0.583 6.583 14 N -0.628 5.628 15 C 0.107 3.893 16 C -0.096 4.096 17 S -0.260 6.260 18 C -0.089 4.089 19 C 0.204 3.796 20 H 0.109 0.891 21 C -0.031 4.031 22 C -0.111 4.111 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.126 4.126 27 H 0.266 0.734 28 H 0.008 0.992 29 H 0.007 0.993 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.401 0.599 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.926 -21.668 -0.603 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.075 0.925 9 C -0.012 4.012 10 C 0.043 3.957 11 N -0.394 5.394 12 C 0.394 3.606 13 O -0.462 6.462 14 N -0.366 5.366 15 C -0.017 4.017 16 C -0.245 4.245 17 S -0.032 6.032 18 C -0.238 4.238 19 C 0.099 3.901 20 H 0.127 0.873 21 C -0.033 4.033 22 C -0.129 4.129 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.143 4.143 26 C -0.144 4.144 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.239 0.761 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.159 0.841 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.081 -22.518 -0.833 22.630 hybrid contribution 0.420 2.405 0.160 2.447 sum 2.501 -20.113 -0.673 20.279 Atomic orbital electron populations 1.70051 1.07470 1.27963 1.51015 1.25821 0.95757 1.02926 0.94398 0.85487 0.78659 0.78645 0.78524 1.19766 1.20470 1.19185 1.21438 0.93485 0.91947 1.51521 0.92524 1.19104 0.94202 0.91711 0.96168 1.20967 0.94411 0.81158 0.99212 1.45562 1.10205 1.04578 1.79063 1.16264 0.85387 0.80927 0.77988 1.91052 1.12445 1.84759 1.57909 1.47306 1.08733 1.03660 1.76911 1.21924 0.79673 1.03359 0.96760 1.23903 1.06111 0.94495 1.00020 1.86885 1.10292 1.14271 1.91737 1.23980 0.95413 1.05146 0.99311 1.20093 0.89574 0.83602 0.96851 0.87333 1.19339 0.93400 0.96749 0.93850 1.20898 0.93365 1.00319 0.98348 1.21195 0.96521 0.99938 0.96695 1.21217 0.99847 1.01587 0.93324 1.21168 0.93375 1.00056 0.99700 1.20869 0.96597 1.01386 0.95596 0.92545 0.97396 0.97505 0.94221 0.94147 0.76127 0.87606 0.88545 0.84146 0.90368 0.89953 0.84998 0.86463 0.85559 0.85367 0.85579 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.42 16 2 C 0.01 0.55 5.46 84.66 0.46 1.01 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.33 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.03 1.28 5.09 29.85 0.15 1.43 16 10 C 0.17 7.13 5.62 86.38 0.49 7.62 16 11 N -0.74 -25.08 5.43 -478.53 -2.60 -27.68 16 12 C 0.69 22.47 8.10 179.05 1.45 23.92 16 13 O -0.58 -22.32 11.25 -3.99 -0.04 -22.36 16 14 N -0.63 -14.84 2.79 -819.58 -2.29 -17.12 16 15 C 0.11 1.85 6.22 86.48 0.54 2.39 16 16 C -0.10 -1.53 6.67 72.06 0.48 -1.05 16 17 S -0.26 -4.60 22.29 -56.49 -1.26 -5.85 16 18 C -0.09 -1.62 5.16 72.06 0.37 -1.25 16 19 C 0.20 4.30 2.96 44.35 0.13 4.43 16 20 H 0.11 1.97 8.12 -2.38 -0.02 1.95 16 21 C -0.03 -0.80 2.87 -19.86 -0.06 -0.86 16 22 C -0.11 -2.93 7.66 22.27 0.17 -2.76 16 23 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 24 C -0.14 -3.69 10.05 22.27 0.22 -3.46 16 25 C -0.12 -3.32 10.05 22.27 0.22 -3.09 16 26 C -0.13 -3.38 8.65 22.27 0.19 -3.19 16 27 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 28 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.40 11.78 5.88 -92.71 -0.55 11.23 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.67 5.44 -2.39 -0.01 1.66 16 35 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.70 6.45 -2.39 -0.02 1.68 16 38 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.12 2.82 5.99 -2.91 -0.02 2.81 16 40 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 41 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.12 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -66.72 354.91 1.87 -64.85 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.47 Total: 24.20 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 5.28 Total: -8.04 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -4.60 Total: -98.23 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -4.60 SS G_CDS: -1.26 Total: -5.85 kcal Total: -66.72 1.87 -64.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273274842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.044 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds