Wall clock time and date at job start Tue Mar 31 2020 13:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99788 * 2 1 4 4 H 1.48499 * 109.47477 * 89.99980 * 3 2 1 5 5 H 1.48504 * 109.46964 * 209.99844 * 3 2 1 6 6 H 1.48497 * 109.47442 * 329.99566 * 3 2 1 7 7 C 1.37875 * 120.00077 * 179.71826 * 2 1 3 8 8 H 1.07999 * 120.00170 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00125 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47276 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.47114 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99961 * 179.97438 * 11 10 9 13 13 O 1.21589 * 119.99907 * 355.03247 * 12 11 10 14 14 N 1.34770 * 120.00234 * 175.03102 * 12 11 10 15 15 C 1.46381 * 119.64487 * 5.53839 * 14 12 11 16 16 C 1.52726 * 109.76596 * 245.08052 * 15 14 12 17 17 S 1.81741 * 108.84355 * 302.51861 * 16 15 14 18 18 C 1.81744 * 102.30414 * 54.42602 * 17 16 15 19 19 C 1.46376 * 119.64946 * 185.80116 * 14 12 11 20 20 H 1.08998 * 109.47130 * 234.91924 * 19 14 12 21 21 C 1.50698 * 109.46723 * 354.91308 * 19 14 12 22 22 C 1.38239 * 120.00142 * 273.77642 * 21 19 14 23 23 C 1.38234 * 119.99889 * 179.76787 * 22 21 19 24 24 C 1.38234 * 120.00274 * 0.50853 * 23 22 21 25 25 C 1.38240 * 119.99581 * 359.74602 * 24 23 22 26 26 C 1.38231 * 120.00090 * 359.97438 * 25 24 23 27 27 H 0.97006 * 120.00188 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46875 * 300.00751 * 9 7 2 29 29 H 1.09001 * 109.46590 * 60.00292 * 9 7 2 30 30 H 1.09007 * 109.47166 * 300.00424 * 10 9 7 31 31 H 1.09005 * 109.47203 * 59.99901 * 10 9 7 32 32 H 0.96996 * 120.00245 * 0.02562 * 11 10 9 33 33 H 1.08994 * 109.46682 * 5.08710 * 15 14 12 34 34 H 1.08996 * 109.46867 * 125.07994 * 15 14 12 35 35 H 1.09005 * 109.65208 * 182.65327 * 16 15 14 36 36 H 1.09001 * 109.57736 * 62.34080 * 16 15 14 37 37 H 1.08999 * 109.57482 * 185.66358 * 18 17 16 38 38 H 1.09002 * 109.69445 * 65.32638 * 18 17 16 39 39 H 1.08007 * 119.99495 * 0.02562 * 22 21 19 40 40 H 1.08005 * 119.99301 * 180.23186 * 23 22 21 41 41 H 1.07995 * 119.99925 * 179.72423 * 24 23 22 42 42 H 1.07997 * 119.99353 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.99475 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5466 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0059 8 1 1.4645 -2.1293 0.0101 9 6 3.5115 -1.1940 0.0053 10 6 4.0215 -2.6364 0.0119 11 7 5.4865 -2.6364 0.0119 12 6 6.1604 -3.8036 0.0178 13 8 5.5559 -4.8541 0.1142 14 7 7.5043 -3.8063 -0.0833 15 6 8.2335 -2.5371 -0.0764 16 6 8.9165 -2.3265 -1.4261 17 16 10.0201 -3.7333 -1.7514 18 6 8.8996 -5.1534 -1.5753 19 6 8.2188 -5.0781 -0.2045 20 1 8.9726 -5.1476 0.5797 21 6 7.2427 -6.2178 -0.0653 22 6 6.9171 -6.6998 1.1888 23 6 6.0181 -7.7420 1.3167 24 6 5.4526 -8.3092 0.1901 25 6 5.7822 -7.8307 -1.0643 26 6 6.6768 -6.7847 -1.1919 27 1 -0.4851 0.8401 -0.0004 28 1 3.8745 -0.6846 -0.8874 29 1 3.8751 -0.6756 0.8925 30 1 3.6585 -3.1462 0.9044 31 1 3.6578 -3.1545 -0.8756 32 1 5.9715 -1.7964 0.0085 33 1 7.5370 -1.7190 0.1071 34 1 8.9876 -2.5556 0.7104 35 1 9.4971 -1.4043 -1.4032 36 1 8.1628 -2.2642 -2.2111 37 1 9.4693 -6.0796 -1.6500 38 1 8.1441 -5.1248 -2.3605 39 1 7.3621 -6.2592 2.0688 40 1 5.7610 -8.1160 2.2968 41 1 4.7536 -9.1264 0.2899 42 1 5.3406 -8.2742 -1.9444 43 1 6.9345 -6.4112 -2.1719 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273274844.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:38 Heat of formation + Delta-G solvation = 25.052051 kcal Electronic energy + Delta-G solvation = -25143.788845 eV Core-core repulsion = 21702.137850 eV Total energy + Delta-G solvation = -3441.650995 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85012 -38.62272 -36.63098 -35.15017 -33.51801 -32.52924 -30.80967 -30.60626 -29.64997 -29.11917 -25.20135 -24.24605 -23.42756 -22.27363 -21.50125 -20.72179 -19.70344 -18.29187 -16.97173 -16.70562 -16.41581 -16.27890 -15.63076 -15.00240 -14.82228 -14.62317 -14.57208 -14.16718 -14.00657 -13.86670 -13.56703 -13.21367 -13.08985 -13.04722 -12.73972 -12.62414 -12.39337 -11.99379 -11.67177 -11.46940 -11.24671 -10.89138 -10.79500 -10.43620 -10.35113 -10.18329 -10.02982 -9.93346 -9.37020 -9.11192 -8.66564 -8.59470 -8.41406 -7.99736 -7.85997 -6.13641 -4.13830 1.36482 1.58398 1.71821 2.13880 2.70570 3.22087 3.29335 3.30709 3.36901 3.89847 4.13625 4.29580 4.34646 4.55980 4.65753 4.70443 4.72512 4.85579 5.07879 5.19032 5.19162 5.22658 5.23851 5.28376 5.43329 5.49791 5.70741 5.85191 5.98648 6.19365 6.20334 6.27787 6.31791 6.53803 6.66951 6.72571 6.74859 6.79691 6.86404 7.17043 7.20651 7.28319 7.64201 8.11629 8.42017 8.79734 8.91064 9.46342 10.99453 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.012507 B = 0.003997 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.278774 B = 7002.851183 C = 8755.960761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.267 1.267 6 H -0.287 1.287 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.150 3.850 11 N -0.742 5.742 12 C 0.695 3.305 13 O -0.549 6.549 14 N -0.636 5.636 15 C 0.112 3.888 16 C -0.104 4.104 17 S -0.256 6.256 18 C -0.097 4.097 19 C 0.204 3.796 20 H 0.093 0.907 21 C -0.023 4.023 22 C -0.101 4.101 23 C -0.109 4.109 24 C -0.129 4.129 25 C -0.110 4.110 26 C -0.112 4.112 27 H 0.265 0.735 28 H 0.020 0.980 29 H 0.016 0.984 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.388 0.612 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.721 -10.038 -1.113 23.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.192 1.192 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.058 4.058 10 C 0.027 3.973 11 N -0.399 5.399 12 C 0.396 3.604 13 O -0.425 6.425 14 N -0.375 5.375 15 C -0.014 4.014 16 C -0.254 4.254 17 S -0.028 6.028 18 C -0.246 4.246 19 C 0.098 3.902 20 H 0.111 0.889 21 C -0.025 4.025 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.131 4.131 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.224 0.776 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 22.181 -10.642 -1.328 24.638 hybrid contribution -0.829 1.619 0.190 1.829 sum 21.352 -9.022 -1.139 23.208 Atomic orbital electron populations 1.69901 1.06287 1.27056 1.50370 1.24991 0.94748 0.99100 0.94377 0.86758 0.80219 0.83620 0.78491 1.20211 1.19192 1.21246 1.20897 0.88578 0.94897 1.51664 0.90622 1.19783 0.98006 0.91411 0.96636 1.21362 0.74685 0.99806 1.01446 1.45862 1.08959 1.06233 1.78832 1.16153 0.80936 0.85043 0.78239 1.91092 1.66259 1.28765 1.56348 1.47311 1.05034 1.05664 1.79478 1.21574 0.97061 0.86465 0.96293 1.23823 1.01393 0.99132 1.01012 1.86861 1.19851 1.02376 1.93671 1.24074 1.00792 0.99011 1.00773 1.19943 0.92629 0.81806 0.95774 0.88942 1.19116 0.95316 0.93824 0.94234 1.20601 0.98534 0.97107 0.95708 1.20874 0.97036 0.96789 0.98043 1.20930 1.00353 1.00646 0.92844 1.20885 0.97666 0.97112 0.97107 1.20695 0.97818 0.97347 0.97210 0.92530 0.96199 0.96573 0.92104 0.92283 0.77649 0.88894 0.89686 0.86466 0.89160 0.86468 0.88859 0.87380 0.86950 0.86991 0.86962 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.82 27.46 -169.99 -4.67 16.15 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.27 -5.93 6.55 56.52 0.37 -5.56 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C -0.02 -0.46 4.16 -27.88 -0.12 -0.58 16 10 C 0.15 3.01 5.62 -4.04 -0.02 2.99 16 11 N -0.74 -11.93 5.45 -65.22 -0.36 -12.29 16 12 C 0.69 10.94 8.18 -86.92 -0.71 10.23 16 13 O -0.55 -10.22 11.10 5.29 0.06 -10.16 16 14 N -0.64 -7.51 2.80 -173.35 -0.48 -8.00 16 15 C 0.11 0.99 6.15 -4.25 -0.03 0.96 16 16 C -0.10 -0.86 6.65 37.02 0.25 -0.62 16 17 S -0.26 -2.41 22.30 -107.50 -2.40 -4.80 16 18 C -0.10 -0.92 5.21 37.28 0.19 -0.72 16 19 C 0.20 2.21 2.96 -69.03 -0.20 2.00 16 20 H 0.09 0.90 8.11 -51.93 -0.42 0.48 16 21 C -0.02 -0.29 2.87 -104.62 -0.30 -0.59 16 22 C -0.10 -1.35 8.31 -39.58 -0.33 -1.68 16 23 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 24 C -0.13 -1.70 10.05 -39.58 -0.40 -2.10 16 25 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.11 -1.48 7.96 -39.59 -0.32 -1.79 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.44 7.21 -51.93 -0.37 0.06 16 29 H 0.02 0.35 7.56 -51.93 -0.39 -0.04 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.39 5.25 5.86 -40.82 -0.24 5.01 16 33 H 0.09 0.78 5.48 -51.93 -0.28 0.49 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.97 6.42 -51.93 -0.33 0.63 16 39 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.11 1.32 6.02 -52.48 -0.32 1.00 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -32.21 351.20 -11.16 -43.38 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.17 Total: 5.39 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.21 Total: -8.55 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.07 Total: -46.70 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.06 Total: -10.16 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.67 Total: 16.15 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.40 Total: -4.80 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.21 -11.16 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273274844.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.427 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds