Wall clock time and date at job start Tue Mar 31 2020 12:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35826 * 116.99674 * 2 1 4 4 C 1.38007 * 120.18159 * 0.20984 * 3 2 1 5 5 C 1.38811 * 120.41756 * 180.27375 * 4 3 2 6 6 C 1.37896 * 120.69533 * 359.49798 * 5 4 3 7 7 F 1.35102 * 119.98484 * 180.27796 * 6 5 4 8 8 C 1.39328 * 120.03603 * 0.25360 * 6 5 4 9 9 N 1.37625 * 133.06399 * 179.97438 * 8 6 5 10 10 H 0.96999 * 125.63856 * 0.02605 * 9 8 6 11 11 C 1.38268 * 108.72613 * 180.02562 * 9 8 6 12 12 C 1.46922 * 125.45570 * 180.02562 * 11 9 8 13 13 O 1.21663 * 120.00113 * 167.77635 * 12 11 9 14 14 N 1.34774 * 119.99660 * 347.76712 * 12 11 9 15 15 C 1.46497 * 120.00433 * 0.95379 * 14 12 11 16 16 C 1.46507 * 119.99761 * 180.95548 * 14 12 11 17 17 H 1.08994 * 109.47001 * 359.97438 * 16 14 12 18 18 C 1.53004 * 109.46913 * 239.99923 * 16 14 12 19 19 C 1.50691 * 109.47382 * 120.00034 * 16 14 12 20 20 H 1.08002 * 120.00078 * 0.02562 * 19 16 14 21 21 C 1.37873 * 120.00229 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00018 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00100 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47269 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47288 * 120.00539 * 23 21 19 26 26 H 1.48508 * 109.47052 * 239.99939 * 23 21 19 27 27 C 1.35946 * 109.08729 * 0.02562 * 11 9 8 28 28 C 1.40589 * 120.17862 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47382 * 299.99453 * 1 2 3 31 31 H 1.08999 * 109.47113 * 60.00132 * 1 2 3 32 32 H 1.07998 * 119.79075 * 0.05097 * 4 3 2 33 33 H 1.08001 * 119.65112 * 179.77767 * 5 4 3 34 34 H 1.09002 * 109.46800 * 83.60587 * 15 14 12 35 35 H 1.09000 * 109.47490 * 203.61075 * 15 14 12 36 36 H 1.09003 * 109.47134 * 323.60882 * 15 14 12 37 37 H 1.09005 * 109.47146 * 60.00098 * 18 16 14 38 38 H 1.08995 * 109.47063 * 179.97438 * 18 16 14 39 39 H 1.09002 * 109.46945 * 300.00023 * 18 16 14 40 40 H 0.97003 * 120.00356 * 179.97438 * 22 21 19 41 41 H 1.08002 * 126.10967 * 179.97438 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2975 2.3700 0.0044 5 6 1.9225 3.6095 -0.0013 6 6 3.2982 3.7041 -0.0010 7 9 3.8915 4.9179 -0.0010 8 6 4.0768 2.5487 -0.0003 9 7 5.4357 2.3312 -0.0003 10 1 6.1184 3.0203 -0.0006 11 6 5.6671 0.9680 0.0000 12 6 6.9897 0.3281 0.0006 13 8 7.0886 -0.8638 0.2240 14 7 8.0931 1.0613 -0.2464 15 6 7.9760 2.5003 -0.4949 16 6 9.4099 0.4193 -0.2665 17 1 9.2981 -0.6453 -0.0617 18 6 10.3025 1.0529 0.8025 19 6 10.0397 0.6071 -1.6225 20 1 9.5122 1.1506 -2.3924 21 6 11.2898 0.0858 -1.8802 22 7 11.9325 -0.5756 -0.9426 23 14 12.0709 0.3192 -3.5610 24 1 11.1496 1.0927 -4.4318 25 1 13.3507 1.0577 -3.4139 26 1 12.3329 -1.0080 -4.1737 27 6 4.4749 0.3147 -0.0003 28 6 3.4493 1.2883 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2191 2.3129 0.0086 33 1 1.3250 4.5091 -0.0015 34 1 7.9370 3.0312 0.4563 35 1 8.8390 2.8418 -1.0665 36 1 7.0648 2.6986 -1.0593 37 1 9.8470 0.9171 1.7835 38 1 11.2820 0.5750 0.7879 39 1 10.4143 2.1178 0.5981 40 1 12.8119 -0.9427 -1.1240 41 1 4.3360 -0.7563 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280476900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:56 Heat of formation + Delta-G solvation = -33.874826 kcal Electronic energy + Delta-G solvation = -26729.307727 eV Core-core repulsion = 22718.888295 eV Total energy + Delta-G solvation = -4010.419432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.87536 -41.73024 -39.64356 -38.58102 -36.02983 -35.62329 -33.06863 -31.70369 -30.21434 -29.08412 -28.73411 -27.33536 -26.54049 -25.31074 -23.97291 -22.30566 -21.63426 -20.46484 -19.57418 -18.32519 -17.56353 -16.95624 -16.78096 -16.41159 -16.15268 -15.70320 -15.59834 -15.42681 -14.94145 -14.74545 -14.43561 -13.94575 -13.75855 -13.49363 -13.08429 -12.85364 -12.69157 -12.61840 -12.55713 -12.32291 -12.15423 -11.70445 -11.52734 -11.29804 -11.12317 -10.94249 -10.83786 -10.78922 -10.33925 -10.25935 -9.51930 -9.41855 -9.24811 -8.51647 -8.50415 -7.85644 -7.45483 -6.14958 -4.23766 0.68778 1.26902 2.15022 2.77198 3.08800 3.22041 3.30388 3.32824 3.48679 3.64259 3.82143 4.17503 4.33209 4.52080 4.62965 4.77759 4.82279 4.91349 5.05502 5.10736 5.16740 5.22536 5.26437 5.33275 5.58849 5.62081 5.91287 5.94588 6.01314 6.07843 6.35633 6.48774 6.64725 6.68909 6.76087 6.94896 7.18798 7.19768 7.29009 7.40775 7.61583 7.90937 8.07177 8.31187 8.67251 8.84541 9.43039 10.90456 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.003191 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.746599 B = 8773.408245 C = 9374.807968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.181 3.819 4 C -0.231 4.231 5 C -0.087 4.087 6 C 0.046 3.954 7 F -0.145 7.145 8 C 0.103 3.897 9 N -0.570 5.570 10 H 0.430 0.570 11 C 0.038 3.962 12 C 0.569 3.431 13 O -0.527 6.527 14 N -0.584 5.584 15 C 0.061 3.939 16 C 0.258 3.742 17 H 0.068 0.932 18 C -0.147 4.147 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.885 5.885 23 Si 0.900 3.100 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.103 4.103 28 C -0.113 4.113 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.013 0.987 38 H 0.096 0.904 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.907 8.306 2.526 22.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.134 3.866 4 C -0.251 4.251 5 C -0.107 4.107 6 C 0.024 3.976 7 F -0.124 7.124 8 C -0.010 4.010 9 N -0.182 5.182 10 H 0.279 0.721 11 C -0.072 4.072 12 C 0.354 3.646 13 O -0.404 6.404 14 N -0.315 5.315 15 C -0.084 4.084 16 C 0.158 3.842 17 H 0.086 0.914 18 C -0.206 4.206 19 C -0.569 4.569 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.523 5.523 23 Si 0.728 3.272 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.129 4.129 28 C -0.119 4.119 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.115 0.885 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.304 7.486 2.677 21.805 hybrid contribution 0.610 1.040 -0.939 1.528 sum -19.694 8.526 1.739 21.531 Atomic orbital electron populations 1.23114 0.78190 1.04155 1.01474 1.86099 1.21419 1.26593 1.87663 1.18449 0.89678 0.84494 0.93952 1.20620 0.99938 0.90756 1.13812 1.20483 0.91170 0.98619 1.00456 1.16456 0.90258 0.77438 1.13399 1.91462 1.84217 1.41810 1.94872 1.18027 0.84400 0.93678 1.04922 1.43416 1.05229 1.07544 1.62041 0.72144 1.20723 0.96145 0.81644 1.08712 1.17163 0.82071 0.86536 0.78782 1.90820 1.85395 1.13924 1.50264 1.48237 1.08683 1.07697 1.66870 1.22029 1.03286 0.82959 1.00111 1.19068 0.75256 0.94614 0.95221 0.91433 1.22109 1.03458 0.99475 0.95550 1.21323 1.02009 1.36411 0.97148 0.92098 1.24888 0.96831 0.94649 0.97283 1.69882 1.14141 1.35630 1.32658 0.86413 0.79063 0.78058 0.83707 1.19791 1.20888 1.20784 1.20768 0.88296 0.99656 1.04168 1.17182 0.90507 0.92374 1.11809 0.88088 0.92445 0.92440 0.84550 0.84261 0.93332 0.88308 0.92308 0.96826 0.88542 0.95109 0.92587 0.82107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.49 10.50 -19.20 -0.20 -3.69 16 3 C 0.18 2.24 6.73 -38.78 -0.26 1.98 16 4 C -0.23 -2.27 9.03 -39.45 -0.36 -2.63 16 5 C -0.09 -0.88 9.98 -39.49 -0.39 -1.28 16 6 C 0.05 0.58 7.31 -39.30 -0.29 0.30 16 7 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 8 C 0.10 1.47 7.23 -83.89 -0.61 0.86 16 9 N -0.57 -8.42 5.09 -7.31 -0.04 -8.45 16 10 H 0.43 5.60 4.91 -40.82 -0.20 5.40 16 11 C 0.04 0.66 6.56 -82.27 -0.54 0.12 16 12 C 0.57 12.07 7.64 -12.75 -0.10 11.97 16 13 O -0.53 -13.01 16.19 5.22 0.08 -12.92 16 14 N -0.58 -12.30 2.75 -176.72 -0.49 -12.79 16 15 C 0.06 0.98 7.79 59.85 0.47 1.45 16 16 C 0.26 6.44 2.63 -69.08 -0.18 6.26 16 17 H 0.07 1.95 6.90 -51.93 -0.36 1.60 16 18 C -0.15 -3.44 8.97 37.16 0.33 -3.10 16 19 C -0.53 -14.01 7.95 -34.45 -0.27 -14.28 16 20 H 0.06 1.59 7.44 -52.49 -0.39 1.20 16 21 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 22 N -0.89 -24.56 11.32 55.43 0.63 -23.93 16 23 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C -0.10 -1.69 10.54 -39.20 -0.41 -2.11 16 28 C -0.11 -1.66 6.11 -106.84 -0.65 -2.31 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 32 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 33 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.10 1.67 7.12 -51.93 -0.37 1.30 16 36 H 0.06 0.84 5.23 -51.93 -0.27 0.57 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 39 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.16 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -31.36 342.88 -6.85 -38.20 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -4.65 Total: 4.47 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.37 Total: 0.06 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.10 Total: -45.17 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.12 Total: -16.62 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.36 -6.85 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280476900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.330 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds