Wall clock time and date at job start Tue Mar 31 2020 12:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35826 * 116.99674 * 2 1 4 4 C 1.38007 * 120.18159 * 0.20984 * 3 2 1 5 5 C 1.38811 * 120.41756 * 180.27375 * 4 3 2 6 6 C 1.37896 * 120.69533 * 359.49798 * 5 4 3 7 7 F 1.35102 * 119.98484 * 180.27796 * 6 5 4 8 8 C 1.39328 * 120.03603 * 0.25360 * 6 5 4 9 9 N 1.37625 * 133.06399 * 179.97438 * 8 6 5 10 10 H 0.96999 * 125.63856 * 0.02605 * 9 8 6 11 11 C 1.38268 * 108.72613 * 180.02562 * 9 8 6 12 12 C 1.46922 * 125.45570 * 180.02562 * 11 9 8 13 13 O 1.21663 * 120.00113 * 167.77635 * 12 11 9 14 14 N 1.34774 * 119.99660 * 347.76712 * 12 11 9 15 15 C 1.46497 * 120.00433 * 0.95379 * 14 12 11 16 16 C 1.46507 * 119.99761 * 180.95548 * 14 12 11 17 17 H 1.08994 * 109.47001 * 359.97438 * 16 14 12 18 18 C 1.53004 * 109.46913 * 239.99923 * 16 14 12 19 19 C 1.50691 * 109.47382 * 120.00034 * 16 14 12 20 20 H 1.08002 * 120.00078 * 0.02562 * 19 16 14 21 21 C 1.37873 * 120.00229 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00018 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00100 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.47269 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47288 * 120.00539 * 23 21 19 26 26 H 1.48508 * 109.47052 * 239.99939 * 23 21 19 27 27 C 1.35946 * 109.08729 * 0.02562 * 11 9 8 28 28 C 1.40589 * 120.17862 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46960 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47382 * 299.99453 * 1 2 3 31 31 H 1.08999 * 109.47113 * 60.00132 * 1 2 3 32 32 H 1.07998 * 119.79075 * 0.05097 * 4 3 2 33 33 H 1.08001 * 119.65112 * 179.77767 * 5 4 3 34 34 H 1.09002 * 109.46800 * 83.60587 * 15 14 12 35 35 H 1.09000 * 109.47490 * 203.61075 * 15 14 12 36 36 H 1.09003 * 109.47134 * 323.60882 * 15 14 12 37 37 H 1.09005 * 109.47146 * 60.00098 * 18 16 14 38 38 H 1.08995 * 109.47063 * 179.97438 * 18 16 14 39 39 H 1.09002 * 109.46945 * 300.00023 * 18 16 14 40 40 H 0.97003 * 120.00356 * 179.97438 * 22 21 19 41 41 H 1.08002 * 126.10967 * 179.97438 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2975 2.3700 0.0044 5 6 1.9225 3.6095 -0.0013 6 6 3.2982 3.7041 -0.0010 7 9 3.8915 4.9179 -0.0010 8 6 4.0768 2.5487 -0.0003 9 7 5.4357 2.3312 -0.0003 10 1 6.1184 3.0203 -0.0006 11 6 5.6671 0.9680 0.0000 12 6 6.9897 0.3281 0.0006 13 8 7.0886 -0.8638 0.2240 14 7 8.0931 1.0613 -0.2464 15 6 7.9760 2.5003 -0.4949 16 6 9.4099 0.4193 -0.2665 17 1 9.2981 -0.6453 -0.0617 18 6 10.3025 1.0529 0.8025 19 6 10.0397 0.6071 -1.6225 20 1 9.5122 1.1506 -2.3924 21 6 11.2898 0.0858 -1.8802 22 7 11.9325 -0.5756 -0.9426 23 14 12.0709 0.3192 -3.5610 24 1 11.1496 1.0927 -4.4318 25 1 13.3507 1.0577 -3.4139 26 1 12.3329 -1.0080 -4.1737 27 6 4.4749 0.3147 -0.0003 28 6 3.4493 1.2883 0.0005 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2191 2.3129 0.0086 33 1 1.3250 4.5091 -0.0015 34 1 7.9370 3.0312 0.4563 35 1 8.8390 2.8418 -1.0665 36 1 7.0648 2.6986 -1.0593 37 1 9.8470 0.9171 1.7835 38 1 11.2820 0.5750 0.7879 39 1 10.4143 2.1178 0.5981 40 1 12.8119 -0.9427 -1.1240 41 1 4.3360 -0.7563 -0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280476900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:55 Heat of formation + Delta-G solvation = -53.347424 kcal Electronic energy + Delta-G solvation = -26730.152122 eV Core-core repulsion = 22718.888295 eV Total energy + Delta-G solvation = -4011.263827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.79286 -42.87015 -40.82145 -39.85704 -37.40049 -36.97564 -34.93785 -32.87149 -31.81573 -30.35568 -29.72881 -28.04594 -27.94773 -27.34875 -25.33011 -23.27050 -22.92270 -21.87771 -20.96619 -19.36899 -18.87110 -18.46421 -17.93894 -17.78313 -17.21576 -17.08020 -16.69241 -16.44652 -16.33285 -16.21676 -15.52698 -15.31564 -14.97339 -14.81769 -14.47280 -14.21501 -14.16999 -13.73772 -13.62370 -13.57948 -13.14802 -13.04559 -12.97849 -12.81309 -12.73953 -12.69196 -12.26004 -12.15392 -12.02681 -11.64367 -11.27074 -11.10491 -10.60911 -10.56899 -9.66711 -9.46793 -8.47362 -8.18833 -6.35854 -0.37992 0.33568 0.90279 1.39642 1.41874 1.52675 1.65565 2.04934 2.24694 2.33335 2.41445 2.59271 3.09704 3.24118 3.37911 3.65073 3.83814 3.96009 4.02225 4.09627 4.30089 4.34264 4.48850 4.51197 4.61626 4.66717 4.76106 4.79573 4.83587 4.85113 4.97774 5.10205 5.15648 5.27765 5.38877 5.39578 5.49517 5.59782 5.70652 5.95123 6.08653 6.17684 6.41462 6.55674 6.70376 7.07986 7.36118 8.86056 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.003191 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.746599 B = 8773.408245 C = 9374.807968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.177 3.823 4 C -0.217 4.217 5 C -0.061 4.061 6 C 0.024 3.976 7 F -0.147 7.147 8 C 0.103 3.897 9 N -0.566 5.566 10 H 0.435 0.565 11 C 0.014 3.986 12 C 0.564 3.436 13 O -0.579 6.579 14 N -0.590 5.590 15 C 0.058 3.942 16 C 0.262 3.738 17 H 0.016 0.984 18 C -0.133 4.133 19 C -0.542 4.542 20 H 0.062 0.938 21 C 0.018 3.982 22 N -0.915 5.915 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.285 1.285 27 C -0.100 4.100 28 C -0.139 4.139 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.266 0.734 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.982 11.004 1.824 26.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.130 3.870 4 C -0.237 4.237 5 C -0.081 4.081 6 C 0.002 3.998 7 F -0.126 7.126 8 C -0.010 4.010 9 N -0.180 5.180 10 H 0.285 0.715 11 C -0.095 4.095 12 C 0.352 3.648 13 O -0.459 6.459 14 N -0.320 5.320 15 C -0.085 4.085 16 C 0.161 3.839 17 H 0.034 0.966 18 C -0.192 4.192 19 C -0.581 4.581 20 H 0.080 0.920 21 C -0.182 4.182 22 N -0.553 5.553 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.198 1.198 26 H -0.211 1.211 27 C -0.127 4.127 28 C -0.144 4.144 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.194 0.806 33 H 0.195 0.805 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -23.402 10.235 1.974 25.619 hybrid contribution 1.296 0.189 -0.687 1.479 sum -22.106 10.424 1.287 24.474 Atomic orbital electron populations 1.23486 0.75539 1.05845 1.03138 1.86083 1.24191 1.26520 1.87355 1.18624 0.88989 0.85856 0.93572 1.21068 1.01724 0.89453 1.11449 1.21001 0.90275 1.00189 0.96675 1.16666 0.91054 0.76810 1.15275 1.91457 1.84430 1.41637 1.95071 1.18302 0.83906 0.94410 1.04337 1.43177 1.05926 1.06312 1.62536 0.71504 1.19992 0.94136 0.83101 1.12299 1.17629 0.83346 0.86087 0.77695 1.90770 1.86385 1.16163 1.52624 1.48174 1.07372 1.09631 1.66793 1.22266 1.04102 0.80106 1.02027 1.18680 0.77391 0.92448 0.95394 0.96649 1.21899 1.01736 1.00107 0.95445 1.21561 1.02300 1.36472 0.97746 0.92027 1.25715 0.97372 0.94280 1.00831 1.70017 1.14466 1.36307 1.34524 0.85382 0.78397 0.77800 0.79272 1.19034 1.19848 1.21078 1.20839 0.88961 0.99780 1.03086 1.17341 0.91688 0.91863 1.13528 0.86712 0.90627 0.90688 0.80625 0.80537 0.90368 0.88794 0.90264 0.96033 0.90962 0.93157 0.92466 0.82961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.86 10.50 -91.60 -0.96 -7.82 16 3 C 0.18 3.95 6.73 22.79 0.15 4.10 16 4 C -0.22 -3.26 9.03 22.35 0.20 -3.06 16 5 C -0.06 -0.96 9.98 22.33 0.22 -0.73 16 6 C 0.02 0.54 7.31 22.45 0.16 0.70 16 7 F -0.15 -3.33 17.27 44.97 0.78 -2.56 16 8 C 0.10 2.81 7.23 39.12 0.28 3.09 16 9 N -0.57 -16.53 5.09 -177.03 -0.90 -17.43 16 10 H 0.44 10.96 4.91 -92.71 -0.46 10.51 16 11 C 0.01 0.51 6.56 39.87 0.26 0.77 16 12 C 0.56 25.34 7.64 86.52 0.66 26.00 16 13 O -0.58 -30.87 16.19 -4.23 -0.07 -30.93 16 14 N -0.59 -25.77 2.75 -831.25 -2.29 -28.06 16 15 C 0.06 1.85 7.79 127.77 1.00 2.85 16 16 C 0.26 13.72 2.63 44.24 0.12 13.83 16 17 H 0.02 0.97 6.90 -2.39 -0.02 0.95 16 18 C -0.13 -6.40 8.97 71.98 0.65 -5.75 16 19 C -0.54 -29.41 7.95 25.60 0.20 -29.20 16 20 H 0.06 3.25 7.44 -2.91 -0.02 3.23 16 21 C 0.02 0.99 5.30 84.65 0.45 1.44 16 22 N -0.91 -52.32 11.32 21.45 0.24 -52.08 16 23 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C -0.10 -3.40 10.54 22.52 0.24 -3.17 16 28 C -0.14 -3.98 6.11 -21.30 -0.13 -4.11 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 0.46 7.65 -2.39 -0.02 0.44 16 31 H 0.07 0.47 7.67 -2.39 -0.02 0.45 16 32 H 0.18 1.26 6.27 -2.91 -0.02 1.24 16 33 H 0.18 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.08 2.04 7.66 -2.39 -0.02 2.03 16 35 H 0.09 3.12 7.12 -2.39 -0.02 3.10 16 36 H 0.08 2.22 5.23 -2.39 -0.01 2.21 16 37 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 38 H 0.07 3.84 6.07 -2.39 -0.01 3.82 16 39 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 40 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.15 5.25 8.06 -2.91 -0.02 5.23 16 Total: -1.00 -72.57 342.88 5.04 -67.53 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.64 Total: 18.46 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.58 Total: 7.99 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -2.95 Total: -97.57 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.03 Total: -38.76 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.57 5.04 -67.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280476900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.183 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds