Wall clock time and date at job start Tue Mar 31 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35829 * 117.00441 * 2 1 4 4 C 1.38013 * 120.17629 * 359.91489 * 3 2 1 5 5 C 1.38807 * 120.41851 * 180.02562 * 4 3 2 6 6 C 1.37902 * 120.69548 * 0.02866 * 5 4 3 7 7 F 1.35100 * 119.98558 * 179.97438 * 6 5 4 8 8 C 1.39325 * 120.03238 * 0.02562 * 6 5 4 9 9 N 1.37630 * 133.06625 * 180.34189 * 8 6 5 10 10 H 0.97003 * 125.63451 * 359.94151 * 9 8 6 11 11 C 1.38257 * 108.72841 * 180.11084 * 9 8 6 12 12 C 1.46928 * 125.45088 * 179.82505 * 11 9 8 13 13 O 1.21665 * 119.99842 * 182.08188 * 12 11 9 14 14 N 1.34778 * 120.00520 * 2.08756 * 12 11 9 15 15 C 1.46497 * 119.99529 * 353.00678 * 14 12 11 16 16 C 1.46497 * 120.00024 * 173.00491 * 14 12 11 17 17 H 1.08996 * 109.47355 * 359.97438 * 16 14 12 18 18 C 1.52999 * 109.46775 * 120.00217 * 16 14 12 19 19 C 1.50703 * 109.47157 * 239.99724 * 16 14 12 20 20 H 1.08005 * 119.99597 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00375 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00282 * 180.02562 * 21 19 16 23 23 Si 1.86807 * 119.99730 * 0.02562 * 21 19 16 24 24 H 1.48497 * 109.47076 * 89.99849 * 23 21 19 25 25 H 1.48497 * 109.46954 * 210.00427 * 23 21 19 26 26 H 1.48507 * 109.47019 * 330.00057 * 23 21 19 27 27 C 1.35932 * 109.09278 * 359.56828 * 11 9 8 28 28 C 1.40584 * 120.18232 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46989 * 300.00016 * 1 2 3 30 30 H 1.08996 * 109.47067 * 59.99263 * 1 2 3 31 31 H 1.08991 * 109.47344 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.79154 * 0.02818 * 4 3 2 33 33 H 1.08003 * 119.65310 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47006 * 297.66877 * 15 14 12 35 35 H 1.09004 * 109.47510 * 57.66740 * 15 14 12 36 36 H 1.09003 * 109.47188 * 177.67115 * 15 14 12 37 37 H 1.08996 * 109.47333 * 299.99382 * 18 16 14 38 38 H 1.09005 * 109.47172 * 180.02562 * 18 16 14 39 39 H 1.08998 * 109.47562 * 60.00159 * 18 16 14 40 40 H 0.97003 * 119.99875 * 179.97438 * 22 21 19 41 41 H 1.08001 * 126.11530 * 180.27180 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2977 2.3700 -0.0018 5 6 1.9228 3.6094 -0.0023 6 6 3.2985 3.7040 -0.0017 7 9 3.8919 4.9177 -0.0028 8 6 4.0769 2.5485 -0.0010 9 7 5.4359 2.3308 0.0056 10 1 6.1186 3.0199 0.0107 11 6 5.6671 0.9677 0.0002 12 6 6.9897 0.3277 0.0009 13 8 7.0787 -0.8849 -0.0426 14 7 8.1043 1.0839 0.0498 15 6 8.0053 2.5419 -0.0522 16 6 9.4148 0.4477 0.2051 17 1 9.2892 -0.6334 0.2639 18 6 10.2957 0.7948 -0.9967 19 6 10.0688 0.9463 1.4679 20 1 9.5590 1.6649 2.0926 21 6 11.3179 0.4852 1.8259 22 7 11.8884 0.9200 2.9282 23 14 12.1999 -0.7572 0.7450 24 1 13.0255 -0.0409 -0.2601 25 1 13.0754 -1.6119 1.5865 26 1 11.1997 -1.6065 0.0495 27 6 4.4751 0.3145 -0.0003 28 6 3.4494 1.2881 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.2192 2.3130 -0.0027 33 1 1.3253 4.5092 -0.0033 34 1 7.5855 2.8106 -1.0216 35 1 7.3590 2.9186 0.7406 36 1 8.9977 2.9814 0.0483 37 1 9.8228 0.4341 -1.9101 38 1 11.2707 0.3211 -0.8815 39 1 10.4214 1.8759 -1.0550 40 1 12.7670 0.5952 3.1801 41 1 4.3361 -0.7565 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280476901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:02 Heat of formation + Delta-G solvation = -25.358693 kcal Electronic energy + Delta-G solvation = -26792.615900 eV Core-core repulsion = 22782.565755 eV Total energy + Delta-G solvation = -4010.050145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -48.87828 -41.75376 -39.70638 -38.71407 -36.05508 -35.84360 -33.01833 -31.75889 -30.77938 -29.41770 -28.80646 -27.37399 -26.72660 -25.24825 -24.10888 -22.32277 -21.71547 -20.52638 -19.62566 -18.34544 -17.67999 -17.01747 -16.95120 -16.46632 -16.18149 -15.81319 -15.63573 -15.58863 -15.13117 -14.75887 -14.57110 -14.05007 -13.70551 -13.54524 -13.12385 -12.99167 -12.92824 -12.75631 -12.58970 -12.33916 -12.32763 -12.15949 -11.89847 -11.63678 -11.30772 -11.26778 -10.86295 -10.81367 -10.25733 -9.77663 -9.56942 -9.54261 -9.38240 -8.72315 -8.54331 -8.02018 -7.48830 -6.23117 -4.25685 0.65306 1.25528 2.08282 2.75360 3.06555 3.18145 3.32468 3.34246 3.45430 3.51030 3.68892 4.16498 4.27811 4.49234 4.59015 4.72099 4.80049 4.89923 5.01142 5.09002 5.10079 5.20209 5.24235 5.29723 5.46206 5.57934 5.87400 5.92578 5.93820 5.99644 6.12092 6.20712 6.29837 6.38511 6.46086 6.67444 6.72639 6.97405 7.13247 7.16917 7.25572 7.49059 7.93326 8.31463 8.58309 8.76814 9.36506 10.89213 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021147 B = 0.003286 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.721397 B = 8520.046590 C = 9323.529075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.182 3.818 4 C -0.231 4.231 5 C -0.086 4.086 6 C 0.047 3.953 7 F -0.144 7.144 8 C 0.105 3.895 9 N -0.570 5.570 10 H 0.430 0.570 11 C 0.035 3.965 12 C 0.575 3.425 13 O -0.528 6.528 14 N -0.581 5.581 15 C 0.067 3.933 16 C 0.231 3.769 17 H 0.067 0.933 18 C -0.162 4.162 19 C -0.535 4.535 20 H 0.079 0.921 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.883 3.117 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.262 1.262 27 C -0.100 4.100 28 C -0.114 4.114 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.104 0.896 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.267 0.733 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.419 5.067 -7.937 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.135 3.865 4 C -0.251 4.251 5 C -0.106 4.106 6 C 0.025 3.975 7 F -0.123 7.123 8 C -0.008 4.008 9 N -0.184 5.184 10 H 0.280 0.720 11 C -0.075 4.075 12 C 0.361 3.639 13 O -0.404 6.404 14 N -0.312 5.312 15 C -0.077 4.077 16 C 0.129 3.871 17 H 0.085 0.915 18 C -0.220 4.220 19 C -0.573 4.573 20 H 0.097 0.903 21 C -0.125 4.125 22 N -0.528 5.528 23 Si 0.713 3.287 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.186 1.186 27 C -0.125 4.125 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.838 4.336 -7.828 22.678 hybrid contribution 0.753 0.358 -0.361 0.908 sum -20.085 4.693 -8.189 22.193 Atomic orbital electron populations 1.23115 0.78164 1.04155 1.01501 1.86094 1.21441 1.26602 1.87663 1.18447 0.89666 0.84500 0.93923 1.20625 0.99956 0.90751 1.13793 1.20494 0.91175 0.98641 1.00307 1.16458 0.90257 0.77467 1.13359 1.91466 1.84201 1.41776 1.94854 1.18029 0.84405 0.93684 1.04701 1.43500 1.05389 1.07568 1.61927 0.72018 1.20571 0.95805 0.81839 1.09306 1.17123 0.82139 0.86665 0.77951 1.90811 1.85959 1.12741 1.50936 1.47824 1.07630 1.05984 1.69716 1.21936 1.04882 0.82234 0.98618 1.19407 0.77623 0.95735 0.94301 0.91540 1.22477 0.99853 1.01545 0.98134 1.21131 1.02492 1.27762 1.05915 0.90296 1.24853 0.96908 0.95780 0.95006 1.69866 1.16181 1.43432 1.23340 0.86914 0.80038 0.81824 0.79962 1.20299 1.21988 1.18644 1.20765 0.88283 0.99658 1.03836 1.17176 0.90512 0.92364 1.11967 0.92409 0.92442 0.88089 0.84526 0.84217 0.92956 0.92779 0.87715 0.94547 0.92885 0.92537 0.92267 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.42 10.50 -19.21 -0.20 -3.62 16 3 C 0.18 2.20 6.73 -38.78 -0.26 1.94 16 4 C -0.23 -2.24 9.03 -39.45 -0.36 -2.59 16 5 C -0.09 -0.86 9.98 -39.49 -0.39 -1.26 16 6 C 0.05 0.58 7.31 -39.30 -0.29 0.29 16 7 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 8 C 0.10 1.48 7.23 -83.89 -0.61 0.88 16 9 N -0.57 -8.32 5.36 -7.31 -0.04 -8.36 16 10 H 0.43 5.56 4.36 -40.82 -0.18 5.38 16 11 C 0.03 0.59 6.73 -82.28 -0.55 0.04 16 12 C 0.57 11.69 7.64 -12.74 -0.10 11.59 16 13 O -0.53 -12.34 16.19 5.22 0.08 -12.25 16 14 N -0.58 -11.70 2.75 -176.72 -0.49 -12.19 16 15 C 0.07 1.05 7.70 59.85 0.46 1.51 16 16 C 0.23 5.40 2.16 -69.08 -0.15 5.25 16 17 H 0.07 1.73 5.98 -51.93 -0.31 1.42 16 18 C -0.16 -3.37 8.66 37.16 0.32 -3.05 16 19 C -0.53 -14.37 8.68 -34.44 -0.30 -14.67 16 20 H 0.08 2.28 7.89 -52.48 -0.41 1.87 16 21 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 22 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 23 Si 0.88 21.30 24.37 -169.99 -4.14 17.16 16 24 H -0.28 -6.36 6.87 56.52 0.39 -5.97 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 27 C -0.10 -1.59 10.52 -39.20 -0.41 -2.00 16 28 C -0.11 -1.65 6.11 -106.84 -0.65 -2.30 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.90 6.27 -52.49 -0.33 0.57 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.05 0.66 7.44 -51.93 -0.39 0.28 16 35 H 0.05 0.78 5.98 -51.93 -0.31 0.47 16 36 H 0.10 1.68 6.74 -51.93 -0.35 1.34 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 39 H 0.06 1.07 7.10 -51.93 -0.37 0.70 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -32.58 335.71 -5.79 -38.37 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.48 Total: 4.29 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.39 Total: -1.14 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.25 Total: -46.08 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.12 Total: -15.87 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.58 -5.79 -38.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280476901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.012 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds