Wall clock time and date at job start Tue Mar 31 2020 12:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35829 * 117.00441 * 2 1 4 4 C 1.38013 * 120.17629 * 359.91489 * 3 2 1 5 5 C 1.38807 * 120.41851 * 180.02562 * 4 3 2 6 6 C 1.37902 * 120.69548 * 0.02866 * 5 4 3 7 7 F 1.35100 * 119.98558 * 179.97438 * 6 5 4 8 8 C 1.39325 * 120.03238 * 0.02562 * 6 5 4 9 9 N 1.37630 * 133.06625 * 180.34189 * 8 6 5 10 10 H 0.97003 * 125.63451 * 359.94151 * 9 8 6 11 11 C 1.38257 * 108.72841 * 180.11084 * 9 8 6 12 12 C 1.46928 * 125.45088 * 179.82505 * 11 9 8 13 13 O 1.21665 * 119.99842 * 182.08188 * 12 11 9 14 14 N 1.34778 * 120.00520 * 2.08756 * 12 11 9 15 15 C 1.46497 * 119.99529 * 353.00678 * 14 12 11 16 16 C 1.46497 * 120.00024 * 173.00491 * 14 12 11 17 17 H 1.08996 * 109.47355 * 359.97438 * 16 14 12 18 18 C 1.52999 * 109.46775 * 120.00217 * 16 14 12 19 19 C 1.50703 * 109.47157 * 239.99724 * 16 14 12 20 20 H 1.08005 * 119.99597 * 0.02562 * 19 16 14 21 21 C 1.37874 * 120.00375 * 180.02562 * 19 16 14 22 22 N 1.31511 * 120.00282 * 180.02562 * 21 19 16 23 23 Si 1.86807 * 119.99730 * 0.02562 * 21 19 16 24 24 H 1.48497 * 109.47076 * 89.99849 * 23 21 19 25 25 H 1.48497 * 109.46954 * 210.00427 * 23 21 19 26 26 H 1.48507 * 109.47019 * 330.00057 * 23 21 19 27 27 C 1.35932 * 109.09278 * 359.56828 * 11 9 8 28 28 C 1.40584 * 120.18232 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.46989 * 300.00016 * 1 2 3 30 30 H 1.08996 * 109.47067 * 59.99263 * 1 2 3 31 31 H 1.08991 * 109.47344 * 180.02562 * 1 2 3 32 32 H 1.08002 * 119.79154 * 0.02818 * 4 3 2 33 33 H 1.08003 * 119.65310 * 180.02562 * 5 4 3 34 34 H 1.09000 * 109.47006 * 297.66877 * 15 14 12 35 35 H 1.09004 * 109.47510 * 57.66740 * 15 14 12 36 36 H 1.09003 * 109.47188 * 177.67115 * 15 14 12 37 37 H 1.08996 * 109.47333 * 299.99382 * 18 16 14 38 38 H 1.09005 * 109.47172 * 180.02562 * 18 16 14 39 39 H 1.08998 * 109.47562 * 60.00159 * 18 16 14 40 40 H 0.97003 * 119.99875 * 179.97438 * 22 21 19 41 41 H 1.08001 * 126.11530 * 180.27180 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2977 2.3700 -0.0018 5 6 1.9228 3.6094 -0.0023 6 6 3.2985 3.7040 -0.0017 7 9 3.8919 4.9177 -0.0028 8 6 4.0769 2.5485 -0.0010 9 7 5.4359 2.3308 0.0056 10 1 6.1186 3.0199 0.0107 11 6 5.6671 0.9677 0.0002 12 6 6.9897 0.3277 0.0009 13 8 7.0787 -0.8849 -0.0426 14 7 8.1043 1.0839 0.0498 15 6 8.0053 2.5419 -0.0522 16 6 9.4148 0.4477 0.2051 17 1 9.2892 -0.6334 0.2639 18 6 10.2957 0.7948 -0.9967 19 6 10.0688 0.9463 1.4679 20 1 9.5590 1.6649 2.0926 21 6 11.3179 0.4852 1.8259 22 7 11.8884 0.9200 2.9282 23 14 12.1999 -0.7572 0.7450 24 1 13.0255 -0.0409 -0.2601 25 1 13.0754 -1.6119 1.5865 26 1 11.1997 -1.6065 0.0495 27 6 4.4751 0.3145 -0.0003 28 6 3.4494 1.2881 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.2192 2.3130 -0.0027 33 1 1.3253 4.5092 -0.0033 34 1 7.5855 2.8106 -1.0216 35 1 7.3590 2.9186 0.7406 36 1 8.9977 2.9814 0.0483 37 1 9.8228 0.4341 -1.9101 38 1 11.2707 0.3211 -0.8815 39 1 10.4214 1.8759 -1.0550 40 1 12.7670 0.5952 3.1801 41 1 4.3361 -0.7565 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280476901.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:58 Heat of formation + Delta-G solvation = -47.347085 kcal Electronic energy + Delta-G solvation = -26793.569388 eV Core-core repulsion = 22782.565755 eV Total energy + Delta-G solvation = -4011.003633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.79915 -42.86747 -40.88802 -39.89404 -37.53371 -36.98256 -34.91247 -33.03033 -32.38579 -30.53140 -29.74636 -28.10867 -28.01925 -27.21532 -25.44473 -23.27869 -22.96183 -21.87369 -20.99013 -19.36258 -19.12571 -18.58968 -17.98358 -17.78519 -17.40056 -17.10761 -16.68727 -16.60138 -16.37840 -16.23325 -15.53255 -15.35327 -14.95186 -14.88551 -14.82151 -14.27372 -14.22067 -14.09067 -13.77921 -13.63378 -13.57501 -13.14530 -13.11244 -13.03408 -12.82649 -12.66469 -12.11160 -12.03084 -11.64942 -11.63538 -11.44833 -11.15336 -10.83423 -10.61804 -9.72872 -9.50822 -8.47632 -8.38894 -6.45220 -0.39931 0.33418 0.87259 1.25513 1.35588 1.44018 1.64319 2.01752 2.18629 2.25186 2.31379 2.58818 2.96139 3.24101 3.32718 3.63891 3.83423 3.95450 4.02250 4.08362 4.23524 4.29356 4.39261 4.48012 4.49519 4.51124 4.57188 4.63861 4.69996 4.76313 4.85112 4.97514 5.09961 5.12710 5.18886 5.33665 5.38124 5.41353 5.54996 5.70805 6.11055 6.18004 6.40639 6.43586 6.57823 6.97463 7.22124 8.76783 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021147 B = 0.003286 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.721397 B = 8520.046590 C = 9323.529075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.178 3.822 4 C -0.218 4.218 5 C -0.061 4.061 6 C 0.022 3.978 7 F -0.148 7.148 8 C 0.103 3.897 9 N -0.568 5.568 10 H 0.434 0.566 11 C 0.011 3.989 12 C 0.571 3.429 13 O -0.571 6.571 14 N -0.588 5.588 15 C 0.064 3.936 16 C 0.233 3.767 17 H 0.037 0.963 18 C -0.155 4.155 19 C -0.532 4.532 20 H 0.046 0.954 21 C 0.027 3.973 22 N -0.936 5.936 23 Si 0.940 3.060 24 H -0.252 1.252 25 H -0.295 1.295 26 H -0.260 1.260 27 C -0.096 4.096 28 C -0.140 4.140 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.270 0.730 41 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.293 6.333 -9.600 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.131 3.869 4 C -0.238 4.238 5 C -0.081 4.081 6 C 0.000 4.000 7 F -0.127 7.127 8 C -0.010 4.010 9 N -0.183 5.183 10 H 0.285 0.715 11 C -0.099 4.099 12 C 0.360 3.640 13 O -0.452 6.452 14 N -0.318 5.318 15 C -0.078 4.078 16 C 0.131 3.869 17 H 0.055 0.945 18 C -0.213 4.213 19 C -0.571 4.571 20 H 0.064 0.936 21 C -0.173 4.173 22 N -0.575 5.575 23 Si 0.767 3.233 24 H -0.177 1.177 25 H -0.223 1.223 26 H -0.185 1.185 27 C -0.123 4.123 28 C -0.145 4.145 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.133 0.867 32 H 0.194 0.806 33 H 0.194 0.806 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.079 0.921 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -23.735 5.646 -9.509 26.185 hybrid contribution 1.329 0.012 0.219 1.347 sum -22.406 5.658 -9.290 24.907 Atomic orbital electron populations 1.23487 0.75543 1.05863 1.03121 1.86079 1.24174 1.26456 1.87335 1.18618 0.89004 0.85841 0.93484 1.21068 1.01732 0.89464 1.11509 1.21002 0.90262 1.00222 0.96644 1.16694 0.91106 0.76847 1.15358 1.91456 1.84442 1.41713 1.95078 1.18316 0.83991 0.94445 1.04234 1.43302 1.06024 1.06516 1.62443 0.71521 1.19974 0.94141 0.83121 1.12648 1.17535 0.83226 0.86307 0.76947 1.90763 1.86785 1.14552 1.53050 1.47824 1.06543 1.07783 1.69629 1.22155 1.05155 0.79501 1.01005 1.19094 0.79519 0.94267 0.94064 0.94462 1.22343 0.98770 1.02757 0.97435 1.21317 1.02312 1.26564 1.06890 0.93581 1.25624 0.97850 0.97608 0.96203 1.69992 1.16897 1.45319 1.25300 0.85986 0.79009 0.79590 0.78704 1.17690 1.22254 1.18485 1.20857 0.88823 0.99851 1.02727 1.17349 0.91704 0.91869 1.13584 0.90797 0.90586 0.86651 0.80630 0.80612 0.89489 0.91755 0.88267 0.92437 0.93569 0.90795 0.92096 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -6.63 10.50 -91.63 -0.96 -7.60 16 3 C 0.18 3.90 6.73 22.79 0.15 4.05 16 4 C -0.22 -3.26 9.03 22.35 0.20 -3.06 16 5 C -0.06 -0.97 9.98 22.33 0.22 -0.74 16 6 C 0.02 0.50 7.31 22.45 0.16 0.66 16 7 F -0.15 -3.45 17.27 44.97 0.78 -2.68 16 8 C 0.10 2.81 7.23 39.12 0.28 3.09 16 9 N -0.57 -16.51 5.36 -177.04 -0.95 -17.46 16 10 H 0.43 11.07 4.36 -92.71 -0.40 10.67 16 11 C 0.01 0.37 6.73 39.87 0.27 0.64 16 12 C 0.57 24.14 7.64 86.52 0.66 24.80 16 13 O -0.57 -28.09 16.19 -4.24 -0.07 -28.16 16 14 N -0.59 -24.23 2.75 -831.24 -2.29 -26.52 16 15 C 0.06 2.00 7.70 127.77 0.98 2.99 16 16 C 0.23 11.14 2.16 44.25 0.10 11.24 16 17 H 0.04 2.01 5.98 -2.39 -0.01 1.99 16 18 C -0.16 -6.29 8.66 71.98 0.62 -5.67 16 19 C -0.53 -29.58 8.68 25.60 0.22 -29.35 16 20 H 0.05 2.79 7.89 -2.91 -0.02 2.77 16 21 C 0.03 1.51 5.45 84.65 0.46 1.97 16 22 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 23 Si 0.94 44.37 24.37 68.60 1.67 46.04 16 24 H -0.25 -10.83 6.87 99.48 0.68 -10.15 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 26 H -0.26 -12.13 6.53 99.48 0.65 -11.48 16 27 C -0.10 -3.14 10.52 22.52 0.24 -2.90 16 28 C -0.14 -3.93 6.11 -21.30 -0.13 -4.06 16 29 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 30 H 0.08 0.43 7.66 -2.39 -0.02 0.41 16 31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.18 1.25 6.27 -2.91 -0.02 1.23 16 33 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.09 2.09 7.44 -2.39 -0.02 2.08 16 35 H 0.06 1.86 5.98 -2.38 -0.01 1.85 16 36 H 0.10 3.18 6.74 -2.39 -0.02 3.17 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.93 3.27 -2.38 -0.01 1.92 16 39 H 0.07 2.70 7.10 -2.39 -0.02 2.68 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.16 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -74.48 335.71 4.65 -69.82 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.61 Total: 18.24 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.56 Total: 4.88 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -2.94 Total: -100.55 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -1.03 Total: -35.76 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.78 Total: -2.68 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.67 Total: 46.04 kcal Total: -74.48 4.65 -69.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280476901.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.474 kcal (2) G-P(sol) polarization free energy of solvation -74.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds