Wall clock time and date at job start Tue Mar 31 2020 12:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 C 1.50698 * 109.47149 * 120.00283 * 2 1 3 5 5 H 1.07998 * 120.00106 * 120.00373 * 4 2 1 6 6 C 1.37874 * 119.99910 * 300.27230 * 4 2 1 7 7 N 1.31516 * 120.00284 * 359.72775 * 6 4 2 8 8 Si 1.86803 * 120.00121 * 179.72552 * 6 4 2 9 9 H 1.48507 * 109.46839 * 60.00182 * 8 6 4 10 10 H 1.48491 * 109.47443 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47091 * 300.00554 * 8 6 4 12 12 N 1.46501 * 109.47162 * 240.00319 * 2 1 3 13 13 C 1.46497 * 119.99764 * 300.00054 * 12 2 1 14 14 C 1.34774 * 120.00138 * 119.99490 * 12 2 1 15 15 O 1.21368 * 119.99706 * 5.16318 * 14 12 2 16 16 C 1.49338 * 120.00301 * 185.15834 * 14 12 2 17 17 O 1.21392 * 119.99901 * 6.24845 * 16 14 12 18 18 N 1.34776 * 120.00626 * 186.24593 * 16 14 12 19 19 C 1.46530 * 124.96208 * 354.60948 * 18 16 14 20 20 C 1.53738 * 105.19921 * 179.91718 * 19 18 16 21 21 C 1.51223 * 104.56124 * 0.32696 * 20 19 18 22 22 C 1.38163 * 130.95345 * 179.81775 * 21 20 19 23 23 C 1.38439 * 120.12957 * 179.97438 * 22 21 20 24 24 F 1.35101 * 120.10761 * 179.97438 * 23 22 21 25 25 C 1.38511 * 119.78199 * 359.97438 * 23 22 21 26 26 C 1.37804 * 120.20725 * 0.02562 * 25 23 22 27 27 C 1.38601 * 108.54741 * 359.79053 * 21 20 19 28 28 H 1.09002 * 109.46824 * 299.99740 * 1 2 3 29 29 H 1.08991 * 109.47122 * 59.99799 * 1 2 3 30 30 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00009 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47443 * 95.70592 * 13 12 2 33 33 H 1.08998 * 109.47166 * 215.70040 * 13 12 2 34 34 H 1.09003 * 109.47355 * 335.70348 * 13 12 2 35 35 H 1.09002 * 110.29799 * 298.96374 * 19 18 16 36 36 H 1.08997 * 110.30023 * 61.10059 * 19 18 16 37 37 H 1.09006 * 110.59777 * 241.47179 * 20 19 18 38 38 H 1.08992 * 110.24447 * 119.01135 * 20 19 18 39 39 H 1.07997 * 119.93771 * 359.97438 * 22 21 20 40 40 H 1.08003 * 119.89260 * 180.02562 * 25 23 22 41 41 H 1.08001 * 119.84546 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6947 -0.2427 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3110 -1.1279 4.0079 9 1 3.7961 -1.1285 4.0136 10 1 1.8112 -0.4314 5.2203 11 1 1.8155 -2.5277 4.0020 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1637 1.0957 -1.8464 16 6 3.1958 -0.7015 -3.3580 17 8 2.7348 -1.7864 -3.6478 18 7 4.0709 -0.0981 -4.1865 19 6 4.6067 1.2532 -4.0024 20 6 5.5518 1.4779 -5.1939 21 6 5.4691 0.1960 -5.9918 22 6 6.0946 -0.1830 -7.1640 23 6 5.8524 -1.4327 -7.7082 24 9 6.4639 -1.8027 -8.8547 25 6 4.9811 -2.3024 -7.0735 26 6 4.3558 -1.9269 -5.9042 27 6 4.5953 -0.6673 -5.3498 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.7007 1.1553 3.4845 32 1 0.7954 -2.1449 -2.0838 33 1 2.5039 -2.6070 -1.8963 34 1 1.4308 -2.5710 -0.4767 35 1 3.7991 1.9852 -4.0148 36 1 5.1605 1.3160 -3.0657 37 1 6.5719 1.6453 -4.8480 38 1 5.2094 2.3215 -5.7930 39 1 6.7738 0.4969 -7.6567 40 1 4.7911 -3.2779 -7.4962 41 1 3.6778 -2.6098 -5.4140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283175460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:44 Heat of formation + Delta-G solvation = -62.663524 kcal Electronic energy + Delta-G solvation = -26842.307099 eV Core-core repulsion = 22830.639296 eV Total energy + Delta-G solvation = -4011.667803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -49.00728 -41.44206 -39.60758 -37.89969 -36.61189 -35.44764 -32.96579 -32.53483 -29.96438 -29.55332 -29.27847 -26.39751 -25.37629 -25.01308 -23.48800 -22.84784 -21.73745 -20.47385 -18.90389 -17.49126 -17.38013 -16.78825 -16.68897 -16.41265 -16.05814 -15.82130 -15.67147 -15.01555 -14.87311 -14.56526 -14.09978 -13.69418 -13.55138 -13.28140 -13.16861 -12.98982 -12.64711 -12.55987 -12.39077 -12.17547 -12.11818 -11.79330 -11.68182 -11.17188 -11.10824 -10.92232 -10.83238 -10.73569 -10.36048 -10.25229 -10.18056 -9.30951 -9.19933 -8.93198 -8.52175 -7.98568 -7.76278 -6.17148 -4.25871 0.77502 0.98005 1.83614 2.36568 3.23685 3.28714 3.29450 3.31752 3.59150 3.65674 3.96242 4.29063 4.33904 4.37545 4.65100 4.67483 4.91345 4.96657 4.98345 5.14551 5.15142 5.52490 5.65064 5.72093 5.77567 5.83867 5.94295 6.00299 6.02787 6.15057 6.19119 6.46526 6.61157 6.67751 6.71158 6.90228 7.03427 7.13832 7.29601 7.59184 7.66723 7.88910 8.02606 8.26320 8.51021 8.78612 9.40521 10.88250 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002937 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.412913 B = 9530.796885 C = 9813.529991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.067 0.933 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.551 5.551 13 C 0.081 3.919 14 C 0.496 3.504 15 O -0.529 6.529 16 C 0.516 3.484 17 O -0.496 6.496 18 N -0.534 5.534 19 C 0.111 3.889 20 C -0.090 4.090 21 C -0.108 4.108 22 C -0.113 4.113 23 C 0.071 3.929 24 F -0.141 7.141 25 C -0.125 4.125 26 C -0.104 4.104 27 C 0.141 3.859 28 H 0.098 0.902 29 H 0.013 0.987 30 H 0.033 0.967 31 H 0.266 0.734 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 -1.663 -17.129 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.085 0.915 4 C -0.569 4.569 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.281 5.281 13 C -0.062 4.062 14 C 0.276 3.724 15 O -0.408 6.408 16 C 0.302 3.698 17 O -0.370 6.370 18 N -0.257 5.257 19 C -0.011 4.011 20 C -0.127 4.127 21 C -0.111 4.111 22 C -0.132 4.132 23 C 0.051 3.949 24 F -0.120 7.120 25 C -0.145 4.145 26 C -0.125 4.125 27 C 0.046 3.954 28 H 0.116 0.884 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.296 -1.552 -16.831 18.410 hybrid contribution 0.346 -0.630 0.629 0.955 sum 7.642 -2.182 -16.202 18.046 Atomic orbital electron populations 1.22111 0.97493 0.99914 1.01088 1.19175 0.91264 0.94534 0.79289 0.91535 1.21230 1.32297 1.13356 0.90013 0.92038 1.24876 0.94759 0.94942 0.98989 1.69857 1.35948 1.22517 1.24114 0.86501 0.79258 0.79639 0.81712 1.20147 1.21082 1.20112 1.48268 1.45448 1.12488 1.21919 1.21942 1.00762 0.81624 1.01852 1.19447 0.81961 0.86802 0.84182 1.90711 1.54788 1.18409 1.76907 1.20914 0.78295 0.85275 0.85347 1.90675 1.51843 1.20297 1.74202 1.45706 1.41717 1.17106 1.21203 1.22339 0.97852 0.81594 0.99293 1.21284 1.01285 0.95155 0.94990 1.19849 0.98703 0.96765 0.95754 1.20223 1.01759 0.95521 0.95722 1.17412 0.97748 0.94655 0.85112 1.91486 1.81588 1.91764 1.47142 1.20900 0.97386 1.00257 0.95933 1.20837 1.01280 0.94824 0.95517 1.18477 0.95181 0.94128 0.87656 0.88406 0.96827 0.94757 0.92448 0.93098 0.90917 0.90210 0.88673 0.88387 0.88578 0.88658 0.84414 0.84184 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.09 16 2 C 0.26 6.32 2.63 -69.08 -0.18 6.14 16 3 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 4 C -0.53 -13.92 7.96 -34.44 -0.27 -14.19 16 5 H 0.06 1.60 7.43 -52.49 -0.39 1.21 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.20 11.31 55.43 0.63 -23.57 16 8 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 12 N -0.55 -11.80 2.75 -175.81 -0.48 -12.28 16 13 C 0.08 1.50 8.16 59.85 0.49 1.99 16 14 C 0.50 10.07 7.68 -11.64 -0.09 9.98 16 15 O -0.53 -11.51 13.43 5.48 0.07 -11.43 16 16 C 0.52 8.99 7.66 -11.64 -0.09 8.90 16 17 O -0.50 -8.75 11.57 5.46 0.06 -8.69 16 18 N -0.53 -7.94 3.13 -113.42 -0.35 -8.29 16 19 C 0.11 1.37 5.67 -3.64 -0.02 1.35 16 20 C -0.09 -0.81 6.94 -27.24 -0.19 -1.00 16 21 C -0.11 -1.18 6.23 -104.26 -0.65 -1.83 16 22 C -0.11 -1.12 10.02 -39.53 -0.40 -1.51 16 23 C 0.07 0.76 7.31 -39.41 -0.29 0.47 16 24 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 25 C -0.13 -1.34 10.00 -39.64 -0.40 -1.74 16 26 C -0.10 -1.31 9.46 -39.20 -0.37 -1.68 16 27 C 0.14 1.89 6.62 -83.59 -0.55 1.34 16 28 H 0.10 2.47 6.06 -51.93 -0.31 2.16 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 31 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.05 0.88 8.09 -51.93 -0.42 0.45 16 33 H 0.07 1.27 5.98 -51.93 -0.31 0.96 16 34 H 0.08 1.50 7.11 -51.93 -0.37 1.13 16 35 H 0.10 1.19 7.76 -51.93 -0.40 0.79 16 36 H 0.10 1.28 7.51 -51.93 -0.39 0.89 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 41 H 0.15 2.00 6.29 -52.49 -0.33 1.67 16 LS Contribution 340.57 15.07 5.13 5.13 Total: -1.00 -28.97 340.57 -7.63 -36.60 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.93 Total: 1.75 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.77 Total: 6.81 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.21 Total: -44.14 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: 0.14 Total: -20.12 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.97 -7.63 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283175460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.066 kcal (2) G-P(sol) polarization free energy of solvation -28.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds