Wall clock time and date at job start Tue Mar 31 2020 12:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47023 * 2 1 4 4 C 1.50698 * 109.47149 * 120.00283 * 2 1 3 5 5 H 1.07998 * 120.00106 * 120.00373 * 4 2 1 6 6 C 1.37874 * 119.99910 * 300.27230 * 4 2 1 7 7 N 1.31516 * 120.00284 * 359.72775 * 6 4 2 8 8 Si 1.86803 * 120.00121 * 179.72552 * 6 4 2 9 9 H 1.48507 * 109.46839 * 60.00182 * 8 6 4 10 10 H 1.48491 * 109.47443 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47091 * 300.00554 * 8 6 4 12 12 N 1.46501 * 109.47162 * 240.00319 * 2 1 3 13 13 C 1.46497 * 119.99764 * 300.00054 * 12 2 1 14 14 C 1.34774 * 120.00138 * 119.99490 * 12 2 1 15 15 O 1.21368 * 119.99706 * 5.16318 * 14 12 2 16 16 C 1.49338 * 120.00301 * 185.15834 * 14 12 2 17 17 O 1.21392 * 119.99901 * 6.24845 * 16 14 12 18 18 N 1.34776 * 120.00626 * 186.24593 * 16 14 12 19 19 C 1.46530 * 124.96208 * 354.60948 * 18 16 14 20 20 C 1.53738 * 105.19921 * 179.91718 * 19 18 16 21 21 C 1.51223 * 104.56124 * 0.32696 * 20 19 18 22 22 C 1.38163 * 130.95345 * 179.81775 * 21 20 19 23 23 C 1.38439 * 120.12957 * 179.97438 * 22 21 20 24 24 F 1.35101 * 120.10761 * 179.97438 * 23 22 21 25 25 C 1.38511 * 119.78199 * 359.97438 * 23 22 21 26 26 C 1.37804 * 120.20725 * 0.02562 * 25 23 22 27 27 C 1.38601 * 108.54741 * 359.79053 * 21 20 19 28 28 H 1.09002 * 109.46824 * 299.99740 * 1 2 3 29 29 H 1.08991 * 109.47122 * 59.99799 * 1 2 3 30 30 H 1.08998 * 109.47023 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00009 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47443 * 95.70592 * 13 12 2 33 33 H 1.08998 * 109.47166 * 215.70040 * 13 12 2 34 34 H 1.09003 * 109.47355 * 335.70348 * 13 12 2 35 35 H 1.09002 * 110.29799 * 298.96374 * 19 18 16 36 36 H 1.08997 * 110.30023 * 61.10059 * 19 18 16 37 37 H 1.09006 * 110.59777 * 241.47179 * 20 19 18 38 38 H 1.08992 * 110.24447 * 119.01135 * 20 19 18 39 39 H 1.07997 * 119.93771 * 359.97438 * 22 21 20 40 40 H 1.08003 * 119.89260 * 180.02562 * 25 23 22 41 41 H 1.08001 * 119.84546 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6947 -0.2427 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3110 -1.1279 4.0079 9 1 3.7961 -1.1285 4.0136 10 1 1.8112 -0.4314 5.2203 11 1 1.8155 -2.5277 4.0020 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0834 15 8 3.1637 1.0957 -1.8464 16 6 3.1958 -0.7015 -3.3580 17 8 2.7348 -1.7864 -3.6478 18 7 4.0709 -0.0981 -4.1865 19 6 4.6067 1.2532 -4.0024 20 6 5.5518 1.4779 -5.1939 21 6 5.4691 0.1960 -5.9918 22 6 6.0946 -0.1830 -7.1640 23 6 5.8524 -1.4327 -7.7082 24 9 6.4639 -1.8027 -8.8547 25 6 4.9811 -2.3024 -7.0735 26 6 4.3558 -1.9269 -5.9042 27 6 4.5953 -0.6673 -5.3498 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.7007 1.1553 3.4845 32 1 0.7954 -2.1449 -2.0838 33 1 2.5039 -2.6070 -1.8963 34 1 1.4308 -2.5710 -0.4767 35 1 3.7991 1.9852 -4.0148 36 1 5.1605 1.3160 -3.0657 37 1 6.5719 1.6453 -4.8480 38 1 5.2094 2.3215 -5.7930 39 1 6.7738 0.4969 -7.6567 40 1 4.7911 -3.2779 -7.4962 41 1 3.6778 -2.6098 -5.4140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283175460.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:42 Heat of formation + Delta-G solvation = -78.093598 kcal Electronic energy + Delta-G solvation = -26842.976198 eV Core-core repulsion = 22830.639296 eV Total energy + Delta-G solvation = -4012.336902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86142 -42.59833 -40.94266 -39.30894 -37.83726 -36.96561 -34.80493 -33.55616 -31.51847 -30.84109 -30.18969 -27.92316 -27.35227 -26.43050 -24.39409 -24.12260 -22.68229 -21.95659 -20.35650 -18.77981 -18.52735 -18.35386 -17.89169 -17.69626 -17.44704 -17.19787 -16.60636 -16.54309 -16.15296 -15.90283 -15.23651 -15.09610 -14.75823 -14.46634 -14.39079 -14.06631 -14.04843 -13.90501 -13.59706 -13.44213 -13.32144 -13.12596 -12.97624 -12.95445 -12.76055 -12.72740 -12.25686 -12.24657 -12.12907 -11.93634 -11.28379 -11.16088 -10.59106 -10.39273 -10.01729 -9.58589 -8.88828 -8.18226 -6.34667 -0.28572 0.14220 0.54055 1.08685 1.43359 1.44246 1.52228 2.00604 2.26803 2.43431 2.53154 3.00774 3.10428 3.13263 3.45846 3.55775 3.88346 4.05091 4.12062 4.14724 4.25348 4.41120 4.66671 4.69596 4.70845 4.74349 4.85047 4.93170 4.96195 4.96936 4.98489 4.99746 5.10083 5.14041 5.26328 5.37826 5.38195 5.59619 5.80083 5.86906 5.91550 6.07979 6.29590 6.56266 6.69943 6.93826 7.35964 8.86254 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026079 B = 0.002937 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.412913 B = 9530.796885 C = 9813.529991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.262 3.738 3 H 0.026 0.974 4 C -0.545 4.545 5 H 0.060 0.940 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.266 1.266 12 N -0.563 5.563 13 C 0.088 3.912 14 C 0.489 3.511 15 O -0.551 6.551 16 C 0.518 3.482 17 O -0.505 6.505 18 N -0.530 5.530 19 C 0.102 3.898 20 C -0.078 4.078 21 C -0.098 4.098 22 C -0.105 4.105 23 C 0.072 3.928 24 F -0.140 7.140 25 C -0.125 4.125 26 C -0.113 4.113 27 C 0.106 3.894 28 H 0.076 0.924 29 H 0.023 0.977 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.064 -2.132 -18.763 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.584 4.584 5 H 0.078 0.922 6 C -0.178 4.178 7 N -0.551 5.551 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.190 1.190 12 N -0.293 5.293 13 C -0.054 4.054 14 C 0.271 3.729 15 O -0.431 6.431 16 C 0.303 3.697 17 O -0.380 6.380 18 N -0.254 5.254 19 C -0.019 4.019 20 C -0.114 4.114 21 C -0.101 4.101 22 C -0.124 4.124 23 C 0.052 3.948 24 F -0.119 7.119 25 C -0.144 4.144 26 C -0.133 4.133 27 C 0.011 3.989 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.187 0.813 40 H 0.177 0.823 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.809 -2.029 -18.515 20.604 hybrid contribution -0.044 -0.448 1.006 1.102 sum 8.766 -2.477 -17.509 19.737 Atomic orbital electron populations 1.21917 0.96551 1.00378 1.00483 1.18805 0.91927 0.92666 0.80438 0.95606 1.21473 1.32472 1.13435 0.90980 0.92218 1.25653 0.94845 0.95573 1.01752 1.69981 1.36734 1.23618 1.24756 0.85523 0.78494 0.78923 0.78188 1.20155 1.20662 1.19036 1.48222 1.46055 1.13555 1.21479 1.21991 1.01634 0.79965 1.01830 1.19986 0.81200 0.86634 0.85071 1.90684 1.55303 1.19407 1.77676 1.20150 0.79450 0.85247 0.84832 1.90660 1.52680 1.20410 1.74297 1.45656 1.40754 1.17788 1.21183 1.22491 0.98325 0.80396 1.00660 1.21333 1.01692 0.95051 0.93356 1.20061 0.97473 0.96841 0.95677 1.20495 1.01415 0.95545 0.94985 1.17559 0.97318 0.94980 0.84939 1.91497 1.81495 1.91806 1.47086 1.21055 0.96927 1.01213 0.95180 1.20820 1.01633 0.94645 0.96244 1.18752 0.97012 0.95296 0.87803 0.90572 0.95766 0.93624 0.92364 0.91829 0.90004 0.90720 0.89259 0.89594 0.86118 0.85935 0.81343 0.82300 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.38 8.97 71.98 0.65 -5.74 16 2 C 0.26 13.34 2.63 44.25 0.12 13.46 16 3 H 0.03 1.52 6.91 -2.39 -0.02 1.50 16 4 C -0.55 -29.13 7.96 25.60 0.20 -28.92 16 5 H 0.06 3.14 7.43 -2.91 -0.02 3.11 16 6 C 0.02 1.19 5.30 84.65 0.45 1.63 16 7 N -0.91 -50.77 11.31 21.45 0.24 -50.52 16 8 Si 0.96 42.10 29.54 68.60 2.03 44.13 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 N -0.56 -24.67 2.75 -828.51 -2.28 -26.95 16 13 C 0.09 3.25 8.16 127.77 1.04 4.29 16 14 C 0.49 20.46 7.68 87.23 0.67 21.13 16 15 O -0.55 -24.92 13.43 -3.30 -0.04 -24.96 16 16 C 0.52 18.32 7.66 87.23 0.67 18.98 16 17 O -0.51 -17.91 11.57 -3.38 -0.04 -17.95 16 18 N -0.53 -15.66 3.13 -631.08 -1.97 -17.63 16 19 C 0.10 2.47 5.67 86.62 0.49 2.96 16 20 C -0.08 -1.17 6.94 30.26 0.21 -0.96 16 21 C -0.10 -1.87 6.23 -19.63 -0.12 -1.99 16 22 C -0.11 -1.70 10.02 22.30 0.22 -1.48 16 23 C 0.07 1.34 7.31 22.38 0.16 1.50 16 24 F -0.14 -2.65 17.27 44.97 0.78 -1.87 16 25 C -0.12 -2.43 10.00 22.23 0.22 -2.21 16 26 C -0.11 -2.74 9.46 22.52 0.21 -2.53 16 27 C 0.11 2.71 6.62 38.32 0.25 2.96 16 28 H 0.08 3.95 6.06 -2.39 -0.01 3.94 16 29 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.04 2.00 7.67 -2.39 -0.02 1.98 16 31 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 32 H 0.06 2.16 8.09 -2.39 -0.02 2.14 16 33 H 0.08 2.87 5.98 -2.39 -0.01 2.85 16 34 H 0.07 2.80 7.11 -2.39 -0.02 2.78 16 35 H 0.09 2.24 7.76 -2.39 -0.02 2.22 16 36 H 0.09 2.27 7.51 -2.39 -0.02 2.25 16 37 H 0.12 1.30 8.14 -2.38 -0.02 1.29 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 41 H 0.14 3.66 6.29 -2.91 -0.02 3.64 16 Total: -1.00 -63.58 340.57 5.23 -58.35 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 1.07 Total: 14.32 kcal Atomic # 6 Polarization: 17.64 SS G_CDS: 5.45 Total: 23.10 kcal Atomic # 7 Polarization: -91.09 SS G_CDS: -4.01 Total: -95.10 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.08 Total: -42.91 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -63.58 5.23 -58.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283175460.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.746 kcal (2) G-P(sol) polarization free energy of solvation -63.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds