Wall clock time and date at job start Tue Mar 31 2020 13:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00098 * 2 1 4 4 C 1.50699 * 109.47524 * 269.99931 * 3 2 1 5 5 H 1.08000 * 119.99830 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00463 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99433 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00034 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47346 * 90.00390 * 8 6 4 10 10 H 1.48501 * 109.47302 * 210.00281 * 8 6 4 11 11 H 1.48498 * 109.47389 * 330.00512 * 8 6 4 12 12 C 1.34775 * 119.99801 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99936 * 183.43728 * 12 2 1 14 14 C 1.50698 * 120.00261 * 3.42885 * 12 2 1 15 15 H 1.08997 * 110.43638 * 313.71748 * 14 12 2 16 16 C 1.54629 * 110.60147 * 191.09649 * 14 12 2 17 17 C 1.54658 * 101.68507 * 216.25693 * 16 14 12 18 18 N 1.46766 * 105.38555 * 25.76734 * 17 16 14 19 19 C 1.40025 * 124.35404 * 162.85230 * 18 17 16 20 20 C 1.38854 * 120.04518 * 173.56549 * 19 18 17 21 21 C 1.38118 * 119.95012 * 179.97438 * 20 19 18 22 22 C 1.38471 * 120.04690 * 0.27704 * 21 20 19 23 23 F 1.35103 * 119.95092 * 179.72602 * 22 21 20 24 24 C 1.38476 * 120.08826 * 359.44646 * 22 21 20 25 25 C 1.38107 * 120.04637 * 0.55192 * 24 22 21 26 26 C 1.34421 * 111.29874 * 342.58816 * 18 17 16 27 27 O 1.21291 * 124.94407 * 180.65050 * 26 18 17 28 28 H 1.09002 * 109.46973 * 265.18702 * 1 2 3 29 29 H 1.08998 * 109.46796 * 25.18211 * 1 2 3 30 30 H 1.08998 * 109.47220 * 145.18042 * 1 2 3 31 31 H 1.08999 * 109.47244 * 30.00374 * 3 2 1 32 32 H 1.09000 * 109.47273 * 150.00596 * 3 2 1 33 33 H 0.97003 * 119.98853 * 179.97438 * 7 6 4 34 34 H 1.08997 * 110.96802 * 334.58996 * 16 14 12 35 35 H 1.08991 * 110.96998 * 98.31563 * 16 14 12 36 36 H 1.08997 * 110.39901 * 266.74165 * 17 16 14 37 37 H 1.09000 * 110.18532 * 144.67846 * 17 16 14 38 38 H 1.07992 * 120.02437 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.96955 * 180.02562 * 21 20 19 40 40 H 1.08002 * 119.97353 * 180.28342 * 24 22 21 41 41 H 1.07997 * 120.02084 * 179.70094 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7038 -1.4208 5 1 2.0975 1.0963 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5534 3.6181 -0.6730 8 14 3.4368 3.4176 -3.4338 9 1 2.3065 4.2603 -3.9002 10 1 4.6969 4.2008 -3.4966 11 1 3.5541 2.2207 -4.3050 12 6 2.1388 -1.1672 -0.0005 13 8 3.3501 -1.1682 0.0625 14 6 1.3874 -2.4711 -0.0792 15 1 0.5486 -2.4695 0.6169 16 6 2.3306 -3.6611 0.2127 17 6 1.7858 -4.7373 -0.7552 18 7 1.1470 -3.9922 -1.8464 19 6 0.8269 -4.5389 -3.0951 20 6 0.1037 -3.7926 -4.0160 21 6 -0.2105 -4.3336 -5.2474 22 6 0.1903 -5.6213 -5.5616 23 9 -0.1228 -6.1505 -6.7646 24 6 0.9166 -6.3650 -4.6468 25 6 1.2328 -5.8278 -3.4144 26 6 0.9034 -2.7189 -1.4910 27 8 0.3731 -1.8892 -2.1992 28 1 -0.3633 -0.0862 1.0241 29 1 -0.3633 0.9300 -0.4373 30 1 -0.3633 -0.8436 -0.5868 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5137 33 1 4.0302 4.4440 -0.8504 34 1 3.3640 -3.4065 -0.0225 35 1 2.2375 -3.9878 1.2483 36 1 1.0539 -5.3673 -0.2497 37 1 2.6043 -5.3445 -1.1418 38 1 -0.2129 -2.7900 -3.7696 39 1 -0.7726 -3.7533 -5.9641 40 1 1.2322 -7.3675 -4.8956 41 1 1.7951 -6.4100 -2.6994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299513495.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:59 Heat of formation + Delta-G solvation = -93.158615 kcal Electronic energy + Delta-G solvation = -26948.927639 eV Core-core repulsion = 22935.937469 eV Total energy + Delta-G solvation = -4012.990170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.86108 -42.54401 -40.54072 -39.29473 -37.84283 -36.60223 -34.82729 -34.00918 -32.21614 -30.48413 -29.57537 -28.87407 -27.32169 -25.43104 -24.37522 -24.15875 -22.52809 -21.45171 -19.88107 -18.87106 -18.74975 -18.54945 -18.45475 -17.76050 -17.21127 -16.93799 -16.61940 -16.41721 -15.95307 -15.82299 -15.54120 -15.06997 -14.72650 -14.69312 -14.56773 -14.27146 -14.14038 -13.98181 -13.75981 -13.54610 -13.45745 -13.34121 -13.15137 -12.88783 -12.75649 -12.52520 -12.26498 -12.22985 -12.09991 -11.76126 -11.07686 -10.87541 -10.75751 -10.68088 -10.18139 -9.45661 -8.93787 -8.27235 -6.41178 -0.03890 0.18043 1.12470 1.30813 1.32831 1.44001 1.52667 1.86528 2.25862 2.39885 2.60074 3.01575 3.11967 3.22763 3.29594 3.70804 3.74261 3.82755 3.85866 4.09391 4.17039 4.23492 4.37892 4.43230 4.48567 4.65164 4.66352 4.89080 4.93181 4.96934 4.99525 5.03968 5.09761 5.17029 5.18413 5.19302 5.41486 5.51227 5.77435 5.85340 5.92580 6.02245 6.62539 6.70834 6.80626 7.20356 7.35520 8.79654 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013296 B = 0.003833 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.426520 B = 7302.981751 C = 8667.091329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.041 0.959 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.263 1.263 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.512 3.488 13 O -0.584 6.584 14 C -0.138 4.138 15 H 0.168 0.832 16 C -0.112 4.112 17 C 0.095 3.905 18 N -0.555 5.555 19 C 0.147 3.853 20 C -0.153 4.153 21 C -0.130 4.130 22 C 0.055 3.945 23 F -0.148 7.148 24 C -0.115 4.115 25 C -0.116 4.116 26 C 0.519 3.481 27 O -0.525 6.525 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.007 0.993 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.171 0.829 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.849 -24.806 -0.156 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.327 5.327 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.060 0.940 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.188 1.188 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.298 3.702 13 O -0.465 6.465 14 C -0.162 4.162 15 H 0.186 0.814 16 C -0.150 4.150 17 C -0.024 4.024 18 N -0.278 5.278 19 C 0.053 3.947 20 C -0.174 4.174 21 C -0.150 4.150 22 C 0.035 3.965 23 F -0.126 7.126 24 C -0.134 4.134 25 C -0.137 4.137 26 C 0.307 3.693 27 O -0.402 6.402 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.025 0.975 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.156 0.844 39 H 0.160 0.840 40 H 0.188 0.812 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.440 -24.174 -0.458 25.609 hybrid contribution 0.165 1.217 -1.254 1.755 sum -8.275 -22.958 -1.713 24.464 Atomic orbital electron populations 1.22013 0.78235 1.04009 1.02410 1.48056 1.08285 1.06474 1.69905 1.18797 0.91346 0.80188 0.95800 1.21649 1.36917 1.06684 0.93049 0.94027 1.25757 0.94839 0.96269 1.01754 1.70029 1.38822 1.14755 1.32697 0.85503 0.78427 0.78033 0.79373 1.18807 1.19744 1.20685 1.20420 0.87430 0.85735 0.76569 1.90632 1.15820 1.87571 1.52440 1.22219 1.02852 0.94524 0.96586 0.81444 1.22766 0.98769 0.90300 1.03184 1.22799 0.99647 0.94545 0.85442 1.45878 1.57505 1.11255 1.13146 1.18042 0.97595 0.94292 0.84794 1.21455 1.00316 1.01979 0.93620 1.21132 1.01767 0.94603 0.97479 1.17873 1.02709 0.93382 0.82558 1.91474 1.91589 1.86435 1.43139 1.21265 0.98006 1.01706 0.92452 1.20976 1.01779 0.92942 0.97959 1.20823 0.77850 0.81729 0.88861 1.90662 1.43192 1.48606 1.57715 0.90107 0.92143 0.89769 0.95562 0.97523 0.92209 0.90441 0.84258 0.85457 0.86731 0.84365 0.83997 0.81166 0.80704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.58 9.70 127.77 1.24 3.82 16 2 N -0.60 -26.79 2.86 -851.14 -2.43 -29.23 16 3 C 0.26 14.58 5.16 85.63 0.44 15.02 16 4 C -0.54 -33.36 9.39 25.60 0.24 -33.12 16 5 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 6 C 0.01 0.79 5.46 84.66 0.46 1.25 16 7 N -0.92 -57.00 13.29 21.45 0.28 -56.71 16 8 Si 0.96 47.39 29.54 68.60 2.03 49.41 16 9 H -0.26 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 12 C 0.51 21.34 6.86 87.66 0.60 21.94 16 13 O -0.58 -29.46 15.06 -3.05 -0.05 -29.50 16 14 C -0.14 -3.65 2.37 -11.54 -0.03 -3.68 16 15 H 0.17 3.09 7.54 -2.39 -0.02 3.07 16 16 C -0.11 -2.01 6.58 31.71 0.21 -1.80 16 17 C 0.10 1.14 6.53 86.89 0.57 1.71 16 18 N -0.55 -12.40 3.14 -627.27 -1.97 -14.37 16 19 C 0.15 3.33 6.60 38.13 0.25 3.58 16 20 C -0.15 -4.16 9.28 22.39 0.21 -3.95 16 21 C -0.13 -3.09 10.02 22.30 0.22 -2.87 16 22 C 0.05 1.15 7.30 22.38 0.16 1.31 16 23 F -0.15 -3.24 17.27 44.97 0.78 -2.47 16 24 C -0.12 -1.78 10.02 22.30 0.22 -1.56 16 25 C -0.12 -1.76 9.42 22.39 0.21 -1.55 16 26 C 0.52 15.66 6.98 87.90 0.61 16.28 16 27 O -0.53 -20.11 12.39 -3.06 -0.04 -20.15 16 28 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 30 H 0.08 2.66 4.51 -2.39 -0.01 2.65 16 31 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 32 H 0.01 0.42 7.38 -2.39 -0.02 0.40 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.08 1.94 6.90 -2.39 -0.02 1.92 16 35 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.11 0.87 7.21 -2.39 -0.02 0.85 16 38 H 0.14 4.54 5.26 -2.91 -0.02 4.52 16 39 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.18 1.24 6.73 -2.91 -0.02 1.22 16 Total: -1.00 -84.75 344.83 5.30 -79.45 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 1.07 Total: 7.17 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.63 Total: 16.39 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -4.12 Total: -100.31 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.08 Total: -49.65 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -84.75 5.30 -79.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299513495.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.708 kcal (2) G-P(sol) polarization free energy of solvation -84.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds