Wall clock time and date at job start Tue Mar 31 2020 13:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00521 * 2 1 4 4 C 1.50699 * 109.47304 * 270.00031 * 3 2 1 5 5 C 1.38357 * 119.84569 * 269.71899 * 4 3 2 6 6 C 1.37948 * 120.14894 * 179.76080 * 5 4 3 7 7 C 1.39629 * 119.84460 * 0.54073 * 6 5 4 8 8 C 1.43202 * 120.14769 * 179.70040 * 7 6 5 9 9 N 7.46239 * 104.55575 * 296.72046 * 2 1 3 10 10 C 1.39631 * 119.70226 * 359.71507 * 7 6 5 11 11 C 1.37948 * 119.84257 * 0.02562 * 10 7 6 12 12 C 1.34785 * 119.99501 * 179.97438 * 2 1 3 13 13 O 1.21586 * 119.99824 * 175.53612 * 12 2 1 14 14 C 1.47635 * 120.00006 * 355.53456 * 12 2 1 15 15 C 1.40016 * 119.89503 * 221.62187 * 14 12 2 16 16 C 1.36323 * 120.10572 * 179.72055 * 15 14 12 17 17 C 1.40885 * 119.89112 * 0.57500 * 16 15 14 18 18 C 1.41113 * 120.10382 * 179.67384 * 17 16 15 19 19 H 1.07992 * 120.00039 * 209.04890 * 18 17 16 20 20 C 1.40230 * 119.99590 * 29.04815 * 18 17 16 21 21 N 1.30643 * 120.00175 * 10.63434 * 20 18 17 22 22 Si 1.86803 * 119.99652 * 190.63503 * 20 18 17 23 23 H 1.48496 * 109.47173 * 59.99862 * 22 20 18 24 24 H 1.48503 * 109.46678 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46828 * 300.00001 * 22 20 18 26 26 C 1.40891 * 119.79473 * 359.70493 * 17 16 15 27 27 C 1.36318 * 119.88793 * 359.97438 * 26 17 16 28 28 H 1.09006 * 109.47166 * 95.24003 * 1 2 3 29 29 H 1.08999 * 109.47440 * 215.24131 * 1 2 3 30 30 H 1.08998 * 109.46988 * 335.24560 * 1 2 3 31 31 H 1.08999 * 109.47424 * 149.99647 * 3 2 1 32 32 H 1.09004 * 109.46683 * 29.99963 * 3 2 1 33 33 H 1.08000 * 119.92451 * 0.02562 * 5 4 3 34 34 H 1.08000 * 120.07609 * 180.25939 * 6 5 4 35 35 H 1.07998 * 120.07646 * 179.97438 * 10 7 6 36 36 H 1.07997 * 119.91894 * 179.97438 * 11 10 7 37 37 H 1.08003 * 119.94588 * 0.02562 * 15 14 12 38 38 H 1.08000 * 120.05093 * 180.25608 * 16 15 14 39 39 H 0.96993 * 120.00165 * 179.97438 * 21 20 18 40 40 H 1.07997 * 120.05592 * 179.97438 * 26 17 16 41 41 H 1.08002 * 119.94158 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 6 3.6056 1.3071 -2.0680 6 6 3.8396 1.6977 -3.3702 7 6 2.9111 2.5043 -4.0312 8 6 3.1505 2.9188 -5.3809 9 7 3.3404 3.2477 -6.4515 10 6 1.7483 2.9052 -3.3702 11 6 1.5245 2.5029 -2.0698 12 6 2.1388 -1.1673 0.0005 13 8 3.3519 -1.1690 -0.0814 14 6 1.4039 -2.4438 0.1006 15 6 1.8955 -3.4700 0.9166 16 6 1.2173 -4.6483 1.0167 17 6 0.0265 -4.8371 0.2879 18 6 -0.6754 -6.0576 0.3828 19 1 -1.2675 -6.4062 -0.4503 20 6 -0.6041 -6.8178 1.5591 21 7 -0.0657 -6.3079 2.6347 22 14 -1.2790 -8.5594 1.5879 23 1 -0.5618 -9.3848 0.5832 24 1 -1.0840 -9.1434 2.9393 25 1 -2.7280 -8.5341 1.2643 26 6 -0.4611 -3.8038 -0.5364 27 6 0.2205 -2.6266 -0.6249 28 1 -0.3634 -0.0939 -1.0234 29 1 -0.3634 -0.8393 0.5930 30 1 -0.3633 0.9332 0.4303 31 1 3.1500 1.1383 0.5139 32 1 1.6085 2.0283 0.5139 33 1 4.3250 0.6869 -1.5540 34 1 4.7409 1.3840 -3.8757 35 1 1.0263 3.5294 -3.8756 36 1 0.6258 2.8126 -1.5573 37 1 2.8108 -3.3259 1.4715 38 1 1.5951 -5.4377 1.6496 39 1 -0.0166 -6.8336 3.4483 40 1 -1.3733 -3.9441 -1.0972 41 1 -0.1527 -1.8338 -1.2563 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340036229.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:54 Heat of formation + Delta-G solvation = 41.627917 kcal Electronic energy + Delta-G solvation = -24863.167854 eV Core-core repulsion = 21286.791692 eV Total energy + Delta-G solvation = -3576.376162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.08401 -39.10022 -37.24596 -36.63473 -35.19427 -33.89241 -32.22395 -31.27686 -30.11771 -29.63890 -27.57866 -26.44869 -25.25599 -22.94043 -22.76728 -21.40899 -20.93120 -19.09668 -18.95526 -17.55570 -16.58446 -16.23623 -15.90369 -15.59824 -15.35031 -14.81275 -14.49100 -14.22087 -14.12660 -13.74496 -13.64433 -13.37778 -13.06572 -12.98659 -12.90500 -12.46569 -12.38604 -12.20192 -12.07896 -11.95983 -11.77801 -11.60959 -11.40206 -11.22248 -11.13770 -10.97977 -10.59406 -10.04395 -9.55371 -9.39954 -9.26340 -9.20903 -8.84473 -8.40836 -7.70945 -7.49491 -6.94376 -4.60481 0.53283 1.16594 2.28460 2.45521 2.70722 2.93946 2.96001 2.98399 3.00198 3.41987 3.60847 3.68385 3.77554 3.82432 4.49360 4.57688 4.67162 4.69868 5.02232 5.16045 5.31938 5.37208 5.49533 5.50675 5.58771 5.70945 5.75473 5.87044 6.00285 6.04773 6.11599 6.12469 6.22556 6.41292 6.63776 6.75340 6.83496 6.86164 7.02221 7.10717 7.26577 7.43868 7.56410 7.71051 7.86034 7.96564 8.08814 8.43547 8.65586 8.74694 8.84449 9.97432 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002510 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.813952 B =11151.545794 C =11478.241550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.619 5.619 3 C 0.151 3.849 4 C -0.069 4.069 5 C -0.094 4.094 6 C -0.072 4.072 7 C -0.036 4.036 8 C 0.259 3.741 9 N -0.426 5.426 10 C -0.075 4.075 11 C -0.110 4.110 12 C 0.579 3.421 13 O -0.560 6.560 14 C -0.273 4.273 15 C -0.046 4.046 16 C -0.171 4.171 17 C 0.127 3.873 18 C -0.449 4.449 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.915 3.085 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.231 4.231 27 C -0.058 4.058 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.285 0.715 40 H 0.097 0.903 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 13.308 -2.196 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.352 5.352 3 C 0.028 3.972 4 C -0.071 4.071 5 C -0.112 4.112 6 C -0.092 4.092 7 C -0.040 4.040 8 C -0.056 4.056 9 N -0.101 5.101 10 C -0.095 4.095 11 C -0.128 4.128 12 C 0.374 3.626 13 O -0.440 6.440 14 C -0.277 4.277 15 C -0.065 4.065 16 C -0.191 4.191 17 C 0.124 3.876 18 C -0.478 4.478 19 H 0.100 0.900 20 C -0.147 4.147 21 N -0.407 5.407 22 Si 0.739 3.261 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.251 4.251 27 C -0.077 4.077 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.160 0.840 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.103 13.749 -3.617 14.260 hybrid contribution -0.566 -0.885 0.427 1.134 sum 0.537 12.864 -3.189 13.264 Atomic orbital electron populations 1.22024 0.79549 1.02993 1.01601 1.47832 1.06853 1.04884 1.75622 1.20367 0.99046 0.86097 0.91713 1.20675 0.93831 0.94974 0.97644 1.21258 0.97717 0.98302 0.93969 1.21215 0.98173 0.95196 0.94635 1.16020 0.97918 1.03240 0.86820 1.25793 0.93543 0.93411 0.92822 1.81244 1.08011 1.09170 1.11718 1.21098 0.95237 0.98572 0.94604 1.20985 0.99303 0.98278 0.94264 1.18799 0.86723 0.83545 0.73570 1.90628 1.14548 1.87591 1.51214 1.18831 1.01534 0.94835 1.12480 1.20390 0.97260 0.92825 0.96023 1.21048 0.95973 0.97308 1.04736 1.17777 0.89847 0.91552 0.88441 1.19744 1.25177 1.03154 0.99702 0.90020 1.26043 0.93623 1.00136 0.94907 1.69696 1.32409 1.37366 1.01264 0.86248 0.80262 0.81148 0.78462 1.18626 1.20127 1.18800 1.20740 1.01548 0.94475 1.08303 1.20581 0.93229 0.96885 0.97024 0.93003 0.89461 0.92118 0.88948 0.89739 0.83993 0.85073 0.85160 0.85041 0.88790 0.85968 0.90348 0.88520 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 8.97 59.85 0.54 1.52 16 2 N -0.62 -8.93 2.86 -184.16 -0.53 -9.46 16 3 C 0.15 1.69 5.53 -5.20 -0.03 1.67 16 4 C -0.07 -0.73 5.47 -104.53 -0.57 -1.30 16 5 C -0.09 -1.07 9.56 -39.64 -0.38 -1.45 16 6 C -0.07 -0.73 9.76 -39.17 -0.38 -1.11 16 7 C -0.04 -0.36 5.73 -106.93 -0.61 -0.98 16 8 C 0.26 2.96 15.33 -22.47 -0.34 2.62 16 9 N -0.43 -5.75 18.54 41.84 0.78 -4.98 16 10 C -0.07 -0.64 9.76 -39.17 -0.38 -1.02 16 11 C -0.11 -0.94 9.68 -39.64 -0.38 -1.33 16 12 C 0.58 11.05 7.30 -12.42 -0.09 10.96 16 13 O -0.56 -11.82 15.80 5.29 0.08 -11.74 16 14 C -0.27 -5.79 5.16 -104.73 -0.54 -6.33 16 15 C -0.05 -1.05 9.58 -39.61 -0.38 -1.43 16 16 C -0.17 -4.22 8.60 -39.27 -0.34 -4.56 16 17 C 0.13 3.13 5.55 -106.80 -0.59 2.54 16 18 C -0.45 -11.00 9.05 -37.74 -0.34 -11.34 16 19 H 0.08 1.90 7.87 -52.49 -0.41 1.49 16 20 C 0.07 1.69 5.25 -17.31 -0.09 1.60 16 21 N -0.78 -18.81 10.84 55.56 0.60 -18.21 16 22 Si 0.91 17.34 29.57 -169.99 -5.03 12.31 16 23 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 24 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 26 C -0.23 -5.14 9.73 -39.27 -0.38 -5.52 16 27 C -0.06 -1.18 7.55 -39.61 -0.30 -1.48 16 28 H 0.05 0.60 6.84 -51.93 -0.35 0.24 16 29 H 0.09 1.26 6.01 -51.93 -0.31 0.95 16 30 H 0.06 0.54 7.83 -51.93 -0.41 0.13 16 31 H 0.09 1.13 7.43 -51.93 -0.39 0.75 16 32 H 0.08 0.69 7.80 -51.93 -0.40 0.29 16 33 H 0.14 1.79 7.40 -52.49 -0.39 1.41 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.09 2.10 8.06 -52.48 -0.42 1.67 16 38 H 0.12 3.11 6.22 -52.49 -0.33 2.79 16 39 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 40 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.10 1.67 5.53 -52.49 -0.29 1.38 16 LS Contribution 357.99 15.07 5.39 5.39 Total: -1.00 -28.46 357.99 -8.83 -37.29 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.53 Total: 6.32 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -5.60 Total: -16.94 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.85 Total: -32.64 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.46 -8.83 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340036229.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.920 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds