Wall clock time and date at job start Tue Mar 31 2020 12:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 N 1.46496 * 109.47147 * 240.00199 * 2 1 3 5 5 C 1.34780 * 120.00205 * 85.00197 * 4 2 1 6 6 O 1.21588 * 119.99887 * 359.97438 * 5 4 2 7 7 C 1.47641 * 120.00320 * 180.02562 * 5 4 2 8 8 C 1.40010 * 119.89797 * 179.97438 * 7 5 4 9 9 C 1.36311 * 120.10619 * 180.22650 * 8 7 5 10 10 C 1.40890 * 119.89268 * 359.52335 * 9 8 7 11 11 C 1.41106 * 120.10094 * 180.22849 * 10 9 8 12 12 H 1.08008 * 119.99856 * 204.78436 * 11 10 9 13 13 C 1.40225 * 120.00429 * 24.77851 * 11 10 9 14 14 N 1.30645 * 119.99670 * 17.75194 * 13 11 10 15 15 Si 1.86801 * 120.00217 * 197.75022 * 13 11 10 16 16 H 1.48500 * 109.46959 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47119 * 120.00318 * 15 13 11 18 18 H 1.48503 * 109.47053 * 239.99919 * 15 13 11 19 19 C 1.40880 * 119.79000 * 0.47581 * 10 9 8 20 20 C 1.36318 * 119.89386 * 359.75338 * 19 10 9 21 21 C 1.50699 * 109.47241 * 119.99829 * 2 1 3 22 22 C 1.38367 * 119.84131 * 79.72570 * 21 2 1 23 23 C 1.37948 * 120.14681 * 179.76494 * 22 21 2 24 24 C 1.39640 * 119.84657 * 0.51237 * 23 22 21 25 25 C 1.43197 * 120.14859 * 179.76683 * 24 23 22 26 26 N 6.84436 * 109.46304 * 119.99895 * 2 1 3 27 27 C 1.39634 * 119.69795 * 359.74351 * 24 23 22 28 28 C 1.37945 * 119.84606 * 0.02562 * 27 24 23 29 29 H 1.08993 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47187 * 300.00097 * 1 2 3 31 31 H 1.08998 * 109.46977 * 59.99843 * 1 2 3 32 32 H 0.96997 * 120.00284 * 264.99489 * 4 2 1 33 33 H 1.08008 * 119.94228 * 359.95103 * 8 7 5 34 34 H 1.08000 * 120.05264 * 179.74278 * 9 8 7 35 35 H 0.97006 * 119.99884 * 179.97438 * 14 13 11 36 36 H 1.08006 * 120.05426 * 179.73650 * 19 10 9 37 37 H 1.08001 * 119.94209 * 180.02562 * 20 19 10 38 38 H 1.08000 * 119.92745 * 0.02562 * 22 21 2 39 39 H 1.07997 * 120.07822 * 180.22909 * 23 22 21 40 40 H 1.07996 * 120.07618 * 179.97438 * 27 24 23 41 41 H 1.07996 * 119.92422 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1472 -0.0182 -2.3571 6 8 1.8576 1.1615 -2.4118 7 6 2.6388 -0.7142 -3.5628 8 6 2.7712 -0.0137 -4.7678 9 6 3.2203 -0.6533 -5.8847 10 6 3.5609 -2.0190 -5.8226 11 6 4.0309 -2.6842 -6.9749 12 1 3.9159 -3.7543 -7.0653 13 6 4.6469 -1.9560 -8.0028 14 7 5.0995 -0.7527 -7.7701 15 14 4.8206 -2.7063 -9.7046 16 1 4.2320 -4.0697 -9.7068 17 1 4.1096 -1.8579 -10.6946 18 1 6.2589 -2.7880 -10.0652 19 6 3.4260 -2.7195 -4.6078 20 6 2.9716 -2.0726 -3.4973 21 6 2.0324 -0.7104 1.2305 22 6 2.0601 -2.0933 1.2640 23 6 2.5232 -2.7500 2.3853 24 6 2.9547 -2.0159 3.4920 25 6 3.4320 -2.6910 4.6612 26 7 3.8106 -3.2265 5.5887 27 6 2.9190 -0.6206 3.4532 28 6 2.4579 0.0232 2.3237 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2491 -1.6317 -1.1527 33 1 2.5128 1.0340 -4.8135 34 1 3.3181 -0.1131 -6.8148 35 1 5.5260 -0.2490 -8.4810 36 1 3.6819 -3.7676 -4.5565 37 1 2.8682 -2.6088 -2.5655 38 1 1.7223 -2.6599 0.4088 39 1 2.5478 -3.8295 2.4088 40 1 3.2507 -0.0468 4.3059 41 1 2.4301 1.1024 2.2922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340039720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:13 Heat of formation + Delta-G solvation = 12.024165 kcal Electronic energy + Delta-G solvation = -24427.563993 eV Core-core repulsion = 20849.904116 eV Total energy + Delta-G solvation = -3577.659877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21238 -40.25443 -38.90318 -37.73367 -36.27075 -35.66190 -33.08688 -32.04705 -31.81052 -31.25542 -30.27255 -27.65695 -25.66042 -24.09160 -23.66954 -22.90465 -21.97194 -21.09669 -19.89296 -19.32979 -18.74365 -17.40666 -17.08360 -16.40921 -16.10047 -15.73257 -15.69321 -15.59519 -15.16874 -15.07693 -14.99027 -14.50968 -14.41782 -14.37846 -13.99524 -13.94370 -13.82332 -13.63979 -13.28864 -13.14842 -13.07570 -12.81745 -12.66479 -12.55009 -12.33903 -12.10227 -11.86582 -11.72666 -11.32471 -11.10470 -10.68367 -10.10957 -9.95875 -9.75554 -9.52550 -9.37434 -8.76886 -6.45273 -0.26721 0.41012 0.48614 1.19488 1.39016 1.43101 1.56066 1.59897 1.87501 2.14693 2.20294 2.42613 2.82180 2.84742 2.90506 3.56659 3.73847 3.88478 3.98146 4.23335 4.33289 4.35505 4.37879 4.45416 4.48341 4.56394 4.75271 4.82979 4.97513 5.01349 5.05530 5.08404 5.20472 5.24936 5.29764 5.32927 5.33495 5.47582 5.62344 5.71787 5.82758 5.82822 6.00312 6.05533 6.24168 6.42627 6.59896 6.76323 6.80160 6.93376 7.50492 8.18200 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.019989 B = 0.002406 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.437790 B =11635.395061 C =12558.098458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.179 3.821 3 H 0.083 0.917 4 N -0.718 5.718 5 C 0.576 3.424 6 O -0.603 6.603 7 C -0.291 4.291 8 C -0.050 4.050 9 C -0.204 4.204 10 C 0.099 3.901 11 C -0.472 4.472 12 H 0.091 0.909 13 C 0.033 3.967 14 N -0.804 5.804 15 Si 0.987 3.013 16 H -0.251 1.251 17 H -0.266 1.266 18 H -0.265 1.265 19 C -0.246 4.246 20 C -0.036 4.036 21 C -0.059 4.059 22 C -0.118 4.118 23 C -0.058 4.058 24 C -0.043 4.043 25 C 0.281 3.719 26 N -0.468 5.468 27 C -0.059 4.059 28 C -0.110 4.110 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.408 0.592 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.294 0.706 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -2.338 14.620 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.074 3.926 3 H 0.101 0.899 4 N -0.372 5.372 5 C 0.369 3.631 6 O -0.487 6.487 7 C -0.296 4.296 8 C -0.070 4.070 9 C -0.224 4.224 10 C 0.096 3.904 11 C -0.499 4.499 12 H 0.109 0.891 13 C -0.185 4.185 14 N -0.428 5.428 15 Si 0.807 3.193 16 H -0.175 1.175 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.265 4.265 20 C -0.055 4.055 21 C -0.060 4.060 22 C -0.136 4.136 23 C -0.078 4.078 24 C -0.047 4.047 25 C -0.033 4.033 26 N -0.144 5.144 27 C -0.079 4.079 28 C -0.128 4.128 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.246 0.754 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.170 0.830 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.044 -2.157 15.963 16.879 hybrid contribution 0.276 -0.055 -1.331 1.360 sum -4.768 -2.213 14.632 15.547 Atomic orbital electron populations 1.22131 0.93303 1.03195 1.02500 1.19847 0.94938 0.96372 0.81403 0.89919 1.45878 1.68355 1.14371 1.08557 1.18323 0.75662 0.85552 0.83563 1.90628 1.54204 1.17796 1.86050 1.19195 1.20776 0.95649 0.93943 1.20557 0.95842 0.97737 0.92835 1.20935 1.07120 0.96588 0.97719 1.18157 0.86982 0.92210 0.93026 1.20156 1.32276 0.96440 1.01048 0.89089 1.26998 0.92008 0.94693 1.04848 1.69808 1.24855 1.11947 1.36175 0.85078 0.79060 0.79778 0.75415 1.17452 1.19055 1.18918 1.20946 1.12292 1.00292 0.93005 1.20698 0.94512 0.92344 0.97923 1.20177 0.96735 0.94450 0.94680 1.21059 1.00119 0.93476 0.98916 1.21326 0.94611 1.01147 0.90734 1.16111 1.06111 0.93148 0.89310 1.25935 0.92292 0.92481 0.92638 1.81291 1.11009 1.09800 1.12300 1.21336 0.95928 0.91795 0.98839 1.21131 0.98308 1.01446 0.91938 0.90992 0.89515 0.94014 0.75390 0.89073 0.88044 0.89468 0.86643 0.84581 0.83612 0.83043 0.82962 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.46 71.98 0.68 -2.26 16 2 C 0.18 3.78 2.77 44.25 0.12 3.91 16 3 H 0.08 2.04 7.43 -2.39 -0.02 2.03 16 4 N -0.72 -19.13 4.97 -449.15 -2.23 -21.36 16 5 C 0.58 22.05 7.73 86.73 0.67 22.72 16 6 O -0.60 -26.99 15.99 -3.99 -0.06 -27.05 16 7 C -0.29 -12.48 5.89 -19.94 -0.12 -12.60 16 8 C -0.05 -2.46 9.52 22.25 0.21 -2.25 16 9 C -0.20 -10.60 8.63 22.47 0.19 -10.41 16 10 C 0.10 5.01 5.57 -21.28 -0.12 4.90 16 11 C -0.47 -23.27 9.04 23.46 0.21 -23.05 16 12 H 0.09 4.20 7.91 -2.91 -0.02 4.18 16 13 C 0.03 1.54 5.14 85.35 0.44 1.98 16 14 N -0.80 -39.80 10.95 21.87 0.24 -39.56 16 15 Si 0.99 34.96 29.60 68.60 2.03 36.99 16 16 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 17 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 18 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 19 C -0.25 -10.70 9.73 22.47 0.22 -10.48 16 20 C -0.04 -1.38 9.47 22.25 0.21 -1.17 16 21 C -0.06 -0.90 4.96 -19.80 -0.10 -0.99 16 22 C -0.12 -1.49 9.03 22.23 0.20 -1.29 16 23 C -0.06 -0.67 9.76 22.54 0.22 -0.45 16 24 C -0.04 -0.57 5.73 -21.36 -0.12 -0.70 16 25 C 0.28 4.96 15.33 88.33 1.35 6.32 16 26 N -0.47 -10.85 18.54 19.00 0.35 -10.50 16 27 C -0.06 -0.66 9.76 22.54 0.22 -0.44 16 28 C -0.11 -1.36 9.65 22.23 0.21 -1.14 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.41 8.79 4.87 -92.71 -0.45 8.34 16 33 H 0.09 4.49 7.63 -2.91 -0.02 4.47 16 34 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 35 H 0.29 13.04 8.29 -92.70 -0.77 12.28 16 36 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 37 H 0.14 3.77 6.37 -2.91 -0.02 3.75 16 38 H 0.15 1.49 6.92 -2.91 -0.02 1.47 16 39 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.15 1.43 8.03 -2.91 -0.02 1.40 16 Total: -1.00 -65.58 360.76 5.67 -59.92 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.63 Total: 28.97 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 4.71 Total: -27.40 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.64 Total: -71.42 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.06 Total: -27.05 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -65.58 5.67 -59.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340039720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.940 kcal (2) G-P(sol) polarization free energy of solvation -65.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds