Wall clock time and date at job start Tue Mar 31 2020 13:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 119.99599 * 2 1 4 4 H 1.48500 * 109.47307 * 274.24966 * 3 2 1 5 5 H 1.48502 * 109.47586 * 34.25264 * 3 2 1 6 6 H 1.48499 * 109.47327 * 154.25396 * 3 2 1 7 7 C 1.38804 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 341.12901 * 7 2 1 9 9 N 1.36939 * 120.00268 * 161.13078 * 7 2 1 10 10 C 1.46494 * 120.00476 * 123.72369 * 9 7 2 11 11 C 1.50700 * 109.47384 * 95.30521 * 10 9 7 12 12 C 1.38239 * 120.04167 * 274.77658 * 11 10 9 13 13 Cl 1.73603 * 119.97910 * 0.04047 * 12 11 10 14 14 C 1.38388 * 120.04909 * 180.02562 * 12 11 10 15 15 C 1.38289 * 120.13672 * 0.02562 * 14 12 11 16 16 C 1.38090 * 120.08408 * 359.97438 * 15 14 12 17 17 C 1.38868 * 120.04412 * 94.79466 * 11 10 9 18 18 N 1.39666 * 120.06876 * 0.02562 * 17 11 10 19 19 C 1.48541 * 110.99785 * 127.18157 * 18 17 11 20 20 C 1.54933 * 103.22459 * 159.72162 * 19 18 17 21 21 C 1.54595 * 102.92392 * 322.58533 * 20 19 18 22 22 C 1.47898 * 111.00066 * 244.57812 * 18 17 11 23 23 C 1.46507 * 119.99546 * 303.72598 * 9 7 2 24 24 C 1.53005 * 117.49945 * 1.97724 * 23 9 7 25 25 C 1.53000 * 117.49456 * 293.32009 * 23 9 7 26 26 H 0.97005 * 120.00681 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47201 * 335.30203 * 10 9 7 28 28 H 1.09003 * 109.46980 * 215.30912 * 10 9 7 29 29 H 1.07999 * 119.93303 * 180.27689 * 14 12 11 30 30 H 1.07988 * 119.95743 * 179.97438 * 15 14 12 31 31 H 1.07996 * 120.02366 * 179.97438 * 16 15 14 32 32 H 1.09003 * 110.66686 * 278.15505 * 19 18 17 33 33 H 1.08993 * 110.66774 * 41.28767 * 19 18 17 34 34 H 1.08997 * 110.72722 * 204.22619 * 20 19 18 35 35 H 1.09005 * 110.72389 * 80.94583 * 20 19 18 36 36 H 1.08993 * 110.31083 * 263.04299 * 21 20 19 37 37 H 1.09004 * 110.30661 * 140.87229 * 21 20 19 38 38 H 1.08991 * 109.91804 * 333.50665 * 22 18 17 39 39 H 1.08999 * 109.91807 * 94.80752 * 22 18 17 40 40 H 1.08999 * 115.55101 * 147.65397 * 23 9 7 41 41 H 1.08998 * 117.49548 * 0.02562 * 24 23 9 42 42 H 1.08992 * 117.49556 * 145.02106 * 24 23 9 43 43 H 1.09004 * 117.49502 * 214.98176 * 25 23 9 44 44 H 1.09002 * 117.50599 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4077 2.0984 -1.3962 5 1 1.4953 2.6251 0.7880 6 1 3.5897 1.4161 0.6082 7 6 2.0102 -1.2021 0.0005 8 1 1.5138 -2.1121 0.3035 9 7 3.3244 -1.2341 -0.3830 10 6 4.3394 -1.7750 0.5244 11 6 4.5879 -3.2241 0.1938 12 6 3.7787 -4.2059 0.7344 13 17 2.4748 -3.7692 1.7941 14 6 4.0071 -5.5367 0.4313 15 6 5.0449 -5.8885 -0.4122 16 6 5.8567 -4.9123 -0.9554 17 6 5.6302 -3.5749 -0.6541 18 7 6.4503 -2.5857 -1.2014 19 6 7.8833 -2.8792 -0.9430 20 6 8.6168 -2.0375 -2.0172 21 6 7.6877 -2.1604 -3.2466 22 6 6.3083 -2.5336 -2.6726 23 6 3.7154 -0.7274 -1.7009 24 6 2.6162 -0.1329 -2.5838 25 6 3.2216 -1.4960 -2.9281 26 1 -0.4851 0.8400 -0.0004 27 1 3.9884 -1.6920 1.5530 28 1 5.2658 -1.2121 0.4102 29 1 3.3710 -6.3019 0.8512 30 1 5.2208 -6.9279 -0.6465 31 1 6.6671 -5.1881 -1.6137 32 1 8.1675 -2.5567 0.0587 33 1 8.0892 -3.9408 -1.0794 34 1 9.5990 -2.4581 -2.2324 35 1 8.7022 -0.9979 -1.7006 36 1 8.0447 -2.9449 -3.9137 37 1 7.6324 -1.2089 -3.7757 38 1 6.0003 -3.5084 -3.0506 39 1 5.5742 -1.7765 -2.9483 40 1 4.7051 -0.2740 -1.7556 41 1 1.6023 -0.1185 -2.1839 42 1 2.8830 0.7112 -3.2195 43 1 3.8864 -1.5480 -3.7904 44 1 2.6062 -2.3790 -2.7551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342634360.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:20 Heat of formation + Delta-G solvation = 74.753441 kcal Electronic energy + Delta-G solvation = -26371.385199 eV Core-core repulsion = 22929.845712 eV Total energy + Delta-G solvation = -3441.539487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31206 -38.96324 -38.65295 -37.04478 -34.98477 -34.02636 -33.22952 -31.47270 -29.71966 -29.40308 -27.28007 -25.07941 -24.15287 -23.13962 -22.46466 -21.69270 -21.43293 -21.28072 -18.66795 -18.16716 -17.25885 -17.00369 -16.63872 -16.29835 -16.10702 -15.64117 -15.31220 -15.13436 -14.85126 -14.38684 -14.29251 -13.88963 -13.59570 -13.52299 -13.27468 -13.08584 -12.97416 -12.74485 -12.58949 -12.41603 -12.29040 -12.13058 -12.04077 -11.96865 -11.88309 -11.76286 -11.38910 -11.24543 -11.03501 -10.82252 -10.37778 -9.54164 -9.49500 -9.33871 -8.24303 -7.97394 -5.68380 0.25291 0.40608 1.43265 1.44158 1.47134 1.60058 2.55162 2.65534 3.06309 3.12546 3.39590 3.54597 3.80291 3.98824 4.00534 4.09131 4.13410 4.18048 4.31792 4.40940 4.44480 4.48101 4.57481 4.58694 4.69472 4.79211 4.88115 4.93684 4.95313 4.99864 5.04392 5.07464 5.16150 5.20195 5.25148 5.38331 5.39891 5.41072 5.47828 5.57370 5.62660 5.80016 5.98451 6.10869 6.52581 6.61127 7.24724 7.72755 8.27158 9.07974 Molecular weight = 320.14amu Principal moments of inertia in cm(-1) A = 0.011740 B = 0.007039 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.417354 B = 3976.892158 C = 5527.340643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.016 3.984 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.318 1.318 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.057 0.943 9 N -0.569 5.569 10 C 0.191 3.809 11 C -0.075 4.075 12 C -0.036 4.036 13 Cl -0.074 7.074 14 C -0.129 4.129 15 C -0.100 4.100 16 C -0.150 4.150 17 C 0.101 3.899 18 N -0.489 5.489 19 C 0.035 3.965 20 C -0.115 4.115 21 C -0.125 4.125 22 C 0.033 3.967 23 C 0.129 3.871 24 C -0.216 4.216 25 C -0.186 4.186 26 H 0.259 0.741 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.140 0.860 30 H 0.159 0.841 31 H 0.145 0.855 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.153 -9.607 -5.203 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.182 4.182 3 Si 0.752 3.248 4 H -0.188 1.188 5 H -0.247 1.247 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.075 0.925 9 N -0.288 5.288 10 C 0.066 3.934 11 C -0.079 4.079 12 C -0.064 4.064 13 Cl -0.045 7.045 14 C -0.148 4.148 15 C -0.119 4.119 16 C -0.170 4.170 17 C 0.005 3.995 18 N -0.211 5.211 19 C -0.091 4.091 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.092 4.092 23 C 0.022 3.978 24 C -0.254 4.254 25 C -0.226 4.226 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.157 0.843 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.746 -8.935 -4.837 21.322 hybrid contribution -0.715 0.257 0.061 0.762 sum 18.031 -8.678 -4.776 20.573 Atomic orbital electron populations 1.70004 1.07772 1.27040 1.53848 1.26311 0.95120 1.00676 0.96084 0.86042 0.79350 0.81190 0.78231 1.18835 1.24695 1.19018 1.18757 0.86051 0.92924 1.41154 0.92532 1.43531 1.03367 1.70717 1.11210 1.19787 0.92299 0.88388 0.92935 1.20522 0.93752 0.97380 0.96273 1.21033 0.92343 0.94871 0.98141 1.98387 1.48056 1.93423 1.64657 1.21260 0.99776 0.93560 1.00155 1.21185 0.93913 1.00766 0.96063 1.21837 1.01190 0.92688 1.01274 1.18668 0.94282 0.90156 0.96347 1.62206 1.05085 1.42558 1.11205 1.23435 0.85897 0.99280 1.00484 1.22449 0.98542 1.00519 0.93762 1.22411 0.93250 1.02650 0.98010 1.23164 0.99318 1.01157 0.85599 1.21309 0.94814 0.99233 0.82479 1.23390 1.00192 0.96939 1.04896 1.23223 1.04160 0.93786 1.01465 0.93211 0.93494 0.91560 0.84251 0.82318 0.83782 0.90412 0.92258 0.88906 0.91186 0.90036 0.90619 0.93890 0.90305 0.87621 0.90134 0.89087 0.87782 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.60 13.97 21.65 0.30 -58.30 16 2 C 0.02 0.91 3.59 84.86 0.31 1.21 16 3 Si 0.92 46.62 25.31 68.60 1.74 48.36 16 4 H -0.26 -12.55 6.37 99.48 0.63 -11.91 16 5 H -0.32 -16.57 7.11 99.48 0.71 -15.87 16 6 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.26 -14.29 8.50 84.03 0.71 -13.58 16 8 H 0.06 3.44 5.95 -2.91 -0.02 3.42 16 9 N -0.57 -26.43 1.99 -682.34 -1.36 -27.79 16 10 C 0.19 7.90 5.21 85.63 0.45 8.34 16 11 C -0.08 -2.72 5.48 -19.71 -0.11 -2.83 16 12 C -0.04 -1.30 6.31 22.31 0.14 -1.16 16 13 Cl -0.07 -3.00 24.81 -2.72 -0.07 -3.07 16 14 C -0.13 -3.69 9.83 22.32 0.22 -3.47 16 15 C -0.10 -2.31 10.04 22.25 0.22 -2.09 16 16 C -0.15 -3.56 7.99 22.40 0.18 -3.38 16 17 C 0.10 2.95 4.81 38.21 0.18 3.13 16 18 N -0.49 -12.65 4.15 -682.80 -2.83 -15.48 16 19 C 0.03 0.68 6.39 86.65 0.55 1.23 16 20 C -0.11 -1.76 7.06 31.80 0.22 -1.53 16 21 C -0.13 -2.05 6.93 31.47 0.22 -1.83 16 22 C 0.03 0.77 6.51 86.45 0.56 1.34 16 23 C 0.13 5.33 4.35 44.99 0.20 5.52 16 24 C -0.22 -9.42 7.08 30.62 0.22 -9.20 16 25 C -0.19 -7.18 9.32 30.62 0.29 -6.90 16 26 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 27 H 0.05 2.10 6.97 -2.39 -0.02 2.08 16 28 H 0.07 2.61 7.28 -2.39 -0.02 2.59 16 29 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.16 2.47 8.06 -2.92 -0.02 2.45 16 31 H 0.14 2.63 7.00 -2.91 -0.02 2.61 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.06 1.00 6.35 -2.39 -0.02 0.99 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.04 1.00 7.01 -2.39 -0.02 0.99 16 39 H 0.08 2.12 3.84 -2.39 -0.01 2.11 16 40 H 0.11 4.03 7.58 -2.39 -0.02 4.01 16 41 H 0.08 4.26 5.32 -2.39 -0.01 4.24 16 42 H 0.09 3.54 8.11 -2.39 -0.02 3.52 16 43 H 0.10 3.25 7.04 -2.39 -0.02 3.24 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -66.12 345.95 3.28 -62.85 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.93 Total: 18.62 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 4.56 Total: -25.19 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -3.89 Total: -101.57 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.74 Total: 48.36 kcal Atomic # 17 Polarization: -3.00 SS G_CDS: -0.07 Total: -3.07 kcal Total: -66.12 3.28 -62.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342634360.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.599 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds