Wall clock time and date at job start Tue Mar 31 2020 12:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46587 * 2 1 4 4 C 1.53001 * 109.47312 * 240.00208 * 2 1 3 5 5 C 1.52993 * 109.47009 * 174.99707 * 4 2 1 6 6 F 1.39905 * 109.47047 * 60.00350 * 5 4 2 7 7 F 1.39903 * 109.47086 * 179.97438 * 5 4 2 8 8 F 1.39896 * 109.47534 * 299.99643 * 5 4 2 9 9 N 1.46496 * 109.47063 * 119.99766 * 2 1 3 10 10 C 1.34775 * 120.00520 * 275.00214 * 9 2 1 11 11 O 1.21839 * 119.99639 * 0.02562 * 10 9 2 12 12 N 1.33827 * 120.00449 * 180.02562 * 10 9 2 13 13 C 1.32931 * 120.00446 * 179.97438 * 12 10 9 14 14 C 1.41204 * 126.37334 * 0.03302 * 13 12 10 15 15 C 1.34964 * 108.24129 * 179.97438 * 14 13 12 16 16 N 1.36449 * 108.94575 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.84846 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47218 * 84.97405 * 17 16 15 19 19 H 1.08001 * 119.99783 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99754 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00663 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99823 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46864 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47215 * 120.00132 * 22 20 18 25 25 H 1.48505 * 109.47133 * 240.00239 * 22 20 18 26 26 N 1.37414 * 126.37977 * 179.97438 * 13 12 10 27 27 H 0.97004 * 126.36835 * 0.05819 * 26 13 12 28 28 H 1.09007 * 109.47408 * 59.99985 * 1 2 3 29 29 H 1.09007 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47825 * 299.99810 * 1 2 3 31 31 H 1.08999 * 109.46952 * 294.99889 * 4 2 1 32 32 H 1.09006 * 109.46878 * 54.99736 * 4 2 1 33 33 H 0.97007 * 119.99503 * 95.00252 * 9 2 1 34 34 H 1.07997 * 125.88469 * 0.21665 * 14 13 12 35 35 H 1.08003 * 125.52132 * 179.97438 * 15 14 13 36 36 H 1.09004 * 109.47136 * 204.97058 * 17 16 15 37 37 H 1.08995 * 109.47571 * 324.97173 * 17 16 15 38 38 H 0.97000 * 120.00853 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 9 4.1226 -1.2030 -0.1743 7 9 4.0312 -1.2731 -2.4557 8 9 3.9349 0.7348 -1.3697 9 7 2.0183 -0.6905 1.1962 10 6 2.1470 -0.0183 2.3572 11 8 1.8568 1.1638 2.4120 12 7 2.5936 -0.6490 3.4498 13 6 2.7210 0.0142 4.5947 14 6 2.4255 1.3781 4.8098 15 6 2.6867 1.6684 6.1017 16 7 3.1386 0.5424 6.7261 17 6 3.5303 0.4407 8.1342 18 6 2.3085 0.1841 8.9782 19 1 1.3373 0.1051 8.5124 20 6 2.4305 0.0501 10.3450 21 7 3.6131 0.1467 10.9123 22 14 0.9159 -0.2673 11.3913 23 1 -0.2840 -0.3310 10.5187 24 1 1.0734 -1.5560 12.1122 25 1 0.7542 0.8336 12.3749 26 7 3.1637 -0.5001 5.7896 27 1 3.4422 -1.4146 5.9543 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -1.7714 -1.2056 32 1 1.6053 -0.2616 -2.1370 33 1 2.2490 -1.6318 1.1526 34 1 2.0509 2.0691 4.0692 35 1 2.5588 2.6351 6.5660 36 1 4.2356 -0.3813 8.2566 37 1 4.0002 1.3725 8.4489 38 1 3.6990 0.0521 11.8738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343435285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:29 Heat of formation + Delta-G solvation = -87.736952 kcal Electronic energy + Delta-G solvation = -26669.118450 eV Core-core repulsion = 22134.426603 eV Total energy + Delta-G solvation = -4534.691848 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.16200 -47.69859 -47.58856 -40.75545 -39.07485 -36.27942 -34.16001 -32.89475 -31.73284 -31.00923 -30.39654 -29.05058 -26.64802 -24.08979 -23.31465 -22.23098 -21.28355 -20.86767 -19.84152 -18.56444 -18.45957 -17.75966 -17.21432 -16.87047 -16.09922 -16.03120 -14.95353 -14.91077 -14.65140 -14.49949 -14.41375 -14.11845 -14.06341 -13.98734 -13.77639 -13.72938 -13.49605 -13.06452 -12.96295 -12.81945 -12.65091 -12.52376 -12.13625 -11.95150 -11.59737 -11.32655 -11.17568 -11.07975 -10.53351 -10.37223 -9.70812 -9.54463 -9.00473 -8.91957 -8.68801 -8.33337 -6.87656 -6.47444 -4.64666 1.81298 2.10609 2.64931 3.04806 3.14127 3.16877 3.20377 3.45578 3.69097 3.82237 3.97054 4.07180 4.47709 4.57538 4.69535 4.82216 4.84866 5.06596 5.25324 5.29471 5.33134 5.55707 5.75201 5.89757 6.02708 6.16055 6.25551 6.54966 6.57954 6.73467 7.03457 7.37229 7.41095 7.52634 7.65147 7.87603 8.28959 8.43854 8.48254 9.05980 9.63087 10.53415 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.029353 B = 0.002411 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.690125 B =11611.909700 C =11934.456606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 H 0.098 0.902 4 C -0.175 4.175 5 C 0.451 3.549 6 F -0.173 7.173 7 F -0.190 7.190 8 F -0.182 7.182 9 N -0.728 5.728 10 C 0.689 3.311 11 O -0.631 6.631 12 N -0.712 5.712 13 C 0.487 3.513 14 C -0.334 4.334 15 C 0.161 3.839 16 N -0.346 5.346 17 C 0.255 3.745 18 C -0.557 4.557 19 H 0.070 0.930 20 C 0.069 3.931 21 N -0.887 5.887 22 Si 0.909 3.091 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.278 1.278 26 N -0.471 5.471 27 H 0.444 0.556 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.398 0.602 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.051 0.949 37 H 0.068 0.932 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -1.346 -19.281 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.115 0.885 4 C -0.214 4.214 5 C 0.397 3.603 6 F -0.154 7.154 7 F -0.172 7.172 8 F -0.164 7.164 9 N -0.384 5.384 10 C 0.389 3.611 11 O -0.513 6.513 12 N -0.476 5.476 13 C 0.233 3.767 14 C -0.367 4.367 15 C 0.016 3.984 16 N -0.132 5.132 17 C 0.138 3.862 18 C -0.595 4.595 19 H 0.088 0.912 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.204 1.204 26 N -0.194 5.194 27 H 0.291 0.709 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.232 0.768 34 H 0.200 0.800 35 H 0.203 0.797 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.822 -1.459 -18.858 19.002 hybrid contribution -0.385 -0.514 0.775 1.006 sum -2.207 -1.973 -18.083 18.323 Atomic orbital electron populations 1.22152 0.94287 1.02298 1.02999 1.20597 0.94848 0.97519 0.81905 0.88452 1.23282 0.88738 1.06438 1.02920 1.20559 0.92512 0.73770 0.73503 1.93238 1.87574 1.83841 1.50778 1.93177 1.90942 1.81246 1.51837 1.93192 1.93299 1.33843 1.96063 1.44808 1.71818 1.13666 1.08082 1.16539 0.77814 0.83558 0.83220 1.90727 1.57572 1.17144 1.85871 1.68027 1.43655 1.38171 0.97786 1.18698 0.84456 0.88843 0.84682 1.22390 1.19644 0.97398 0.97219 1.22802 0.91629 0.90932 0.93009 1.47970 1.57790 1.00616 1.06801 1.20039 0.97222 1.00655 0.68255 1.21462 0.93695 1.52484 0.91836 0.91172 1.24958 0.96950 0.94025 0.97629 1.69903 1.22730 1.47821 1.11928 0.86249 0.82059 0.78209 0.79932 1.19389 1.20537 1.20409 1.44443 1.63486 1.07835 1.03635 0.70901 0.91847 0.92379 0.90974 0.86840 0.86087 0.76755 0.79994 0.79673 0.93117 0.91431 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.48 37.16 0.35 -1.21 16 2 C 0.16 1.78 2.51 -67.93 -0.17 1.61 16 3 H 0.10 1.31 7.10 -51.93 -0.37 0.94 16 4 C -0.17 -1.35 4.88 -26.73 -0.13 -1.48 16 5 C 0.45 4.77 3.16 37.15 0.12 4.88 16 6 F -0.17 -2.24 15.18 2.25 0.03 -2.20 16 7 F -0.19 -1.95 17.32 2.25 0.04 -1.91 16 8 F -0.18 -2.25 16.71 2.25 0.04 -2.21 16 9 N -0.73 -10.54 3.81 -58.88 -0.22 -10.77 16 10 C 0.69 13.20 8.44 -87.76 -0.74 12.46 16 11 O -0.63 -13.33 12.93 5.06 0.07 -13.26 16 12 N -0.71 -14.07 10.59 -15.79 -0.17 -14.24 16 13 C 0.49 9.53 8.07 -155.30 -1.25 8.28 16 14 C -0.33 -6.28 9.52 -39.62 -0.38 -6.66 16 15 C 0.16 2.75 11.45 -16.66 -0.19 2.56 16 16 N -0.35 -6.47 3.63 -62.24 -0.23 -6.70 16 17 C 0.25 5.33 6.19 -5.19 -0.03 5.30 16 18 C -0.56 -13.26 9.39 -34.44 -0.32 -13.58 16 19 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 20 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -22.59 13.29 55.43 0.74 -21.85 16 22 Si 0.91 19.27 29.54 -169.99 -5.02 14.25 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 26 N -0.47 -8.51 7.38 31.33 0.23 -8.28 16 27 H 0.44 7.09 8.96 -182.55 -1.64 5.46 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 5.22 7.96 -40.82 -0.32 4.89 16 34 H 0.18 3.60 5.77 -52.49 -0.30 3.30 16 35 H 0.19 2.50 8.06 -52.48 -0.42 2.08 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -29.92 341.21 -7.76 -37.68 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.56 Total: 10.59 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: -2.85 Total: 13.76 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: 0.35 Total: -61.83 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.07 Total: -13.26 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.11 Total: -6.33 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.92 -7.76 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343435285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.061 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds