Wall clock time and date at job start Tue Mar 31 2020 12:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46587 * 2 1 4 4 C 1.53001 * 109.47312 * 240.00208 * 2 1 3 5 5 C 1.52993 * 109.47009 * 174.99707 * 4 2 1 6 6 F 1.39905 * 109.47047 * 60.00350 * 5 4 2 7 7 F 1.39903 * 109.47086 * 179.97438 * 5 4 2 8 8 F 1.39896 * 109.47534 * 299.99643 * 5 4 2 9 9 N 1.46496 * 109.47063 * 119.99766 * 2 1 3 10 10 C 1.34775 * 120.00520 * 275.00214 * 9 2 1 11 11 O 1.21839 * 119.99639 * 0.02562 * 10 9 2 12 12 N 1.33827 * 120.00449 * 180.02562 * 10 9 2 13 13 C 1.32931 * 120.00446 * 179.97438 * 12 10 9 14 14 C 1.41204 * 126.37334 * 0.03302 * 13 12 10 15 15 C 1.34964 * 108.24129 * 179.97438 * 14 13 12 16 16 N 1.36449 * 108.94575 * 359.97438 * 15 14 13 17 17 C 1.46504 * 125.84846 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47218 * 84.97405 * 17 16 15 19 19 H 1.08001 * 119.99783 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99754 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00663 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99823 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46864 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47215 * 120.00132 * 22 20 18 25 25 H 1.48505 * 109.47133 * 240.00239 * 22 20 18 26 26 N 1.37414 * 126.37977 * 179.97438 * 13 12 10 27 27 H 0.97004 * 126.36835 * 0.05819 * 26 13 12 28 28 H 1.09007 * 109.47408 * 59.99985 * 1 2 3 29 29 H 1.09007 * 109.47063 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47825 * 299.99810 * 1 2 3 31 31 H 1.08999 * 109.46952 * 294.99889 * 4 2 1 32 32 H 1.09006 * 109.46878 * 54.99736 * 4 2 1 33 33 H 0.97007 * 119.99503 * 95.00252 * 9 2 1 34 34 H 1.07997 * 125.88469 * 0.21665 * 14 13 12 35 35 H 1.08003 * 125.52132 * 179.97438 * 15 14 13 36 36 H 1.09004 * 109.47136 * 204.97058 * 17 16 15 37 37 H 1.08995 * 109.47571 * 324.97173 * 17 16 15 38 38 H 0.97000 * 120.00853 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6131 -1.3137 6 9 4.1226 -1.2030 -0.1743 7 9 4.0312 -1.2731 -2.4557 8 9 3.9349 0.7348 -1.3697 9 7 2.0183 -0.6905 1.1962 10 6 2.1470 -0.0183 2.3572 11 8 1.8568 1.1638 2.4120 12 7 2.5936 -0.6490 3.4498 13 6 2.7210 0.0142 4.5947 14 6 2.4255 1.3781 4.8098 15 6 2.6867 1.6684 6.1017 16 7 3.1386 0.5424 6.7261 17 6 3.5303 0.4407 8.1342 18 6 2.3085 0.1841 8.9782 19 1 1.3373 0.1051 8.5124 20 6 2.4305 0.0501 10.3450 21 7 3.6131 0.1467 10.9123 22 14 0.9159 -0.2673 11.3913 23 1 -0.2840 -0.3310 10.5187 24 1 1.0734 -1.5560 12.1122 25 1 0.7542 0.8336 12.3749 26 7 3.1637 -0.5001 5.7896 27 1 3.4422 -1.4146 5.9543 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -1.7714 -1.2056 32 1 1.6053 -0.2616 -2.1370 33 1 2.2490 -1.6318 1.1526 34 1 2.0509 2.0691 4.0692 35 1 2.5588 2.6351 6.5660 36 1 4.2356 -0.3813 8.2566 37 1 4.0002 1.3725 8.4489 38 1 3.6990 0.0521 11.8738 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343435285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:27 Heat of formation + Delta-G solvation = -106.835321 kcal Electronic energy + Delta-G solvation = -26669.946618 eV Core-core repulsion = 22134.426603 eV Total energy + Delta-G solvation = -4535.520015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.03455 -48.55278 -48.51425 -42.23023 -40.41418 -37.38551 -35.83140 -34.54118 -32.95549 -32.46300 -31.86415 -29.89653 -28.32075 -25.24510 -24.67686 -23.53263 -22.68536 -21.99443 -21.19791 -19.45563 -19.37026 -19.00719 -18.70160 -18.25782 -17.48192 -17.26584 -16.61509 -16.36548 -15.87862 -15.61439 -15.48966 -15.39903 -15.27473 -14.94167 -14.70146 -14.66289 -14.61349 -14.37733 -14.25391 -14.20424 -13.79570 -13.64850 -13.36428 -13.06024 -12.98660 -12.75073 -12.43974 -12.32350 -12.07157 -11.98411 -11.19778 -11.18087 -10.76905 -10.47446 -9.92650 -9.85271 -8.53078 -8.18140 -6.54861 0.34972 0.63617 1.37730 1.42971 1.52699 1.71494 1.86615 2.29158 2.35151 2.88723 2.94362 3.00053 3.05641 3.17535 3.21461 3.82431 3.95231 4.13015 4.31710 4.33825 4.46900 4.53490 4.63516 4.71470 4.85517 4.88238 4.98975 5.09194 5.28768 5.34737 5.52966 5.72155 5.79207 6.00469 6.16588 6.38469 6.62124 6.94188 7.04557 7.19140 8.18394 8.67686 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.029353 B = 0.002411 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.690125 B =11611.909700 C =11934.456606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.152 3.848 3 H 0.072 0.928 4 C -0.159 4.159 5 C 0.444 3.556 6 F -0.191 7.191 7 F -0.187 7.187 8 F -0.197 7.197 9 N -0.717 5.717 10 C 0.676 3.324 11 O -0.658 6.658 12 N -0.723 5.723 13 C 0.471 3.529 14 C -0.346 4.346 15 C 0.176 3.824 16 N -0.351 5.351 17 C 0.268 3.732 18 C -0.563 4.563 19 H 0.059 0.941 20 C 0.029 3.971 21 N -0.914 5.914 22 Si 0.965 3.035 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.274 1.274 26 N -0.468 5.468 27 H 0.451 0.549 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.141 0.859 32 H 0.158 0.842 33 H 0.405 0.595 34 H 0.173 0.827 35 H 0.222 0.778 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 -1.773 -20.285 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.046 3.954 3 H 0.090 0.910 4 C -0.197 4.197 5 C 0.390 3.610 6 F -0.173 7.173 7 F -0.169 7.169 8 F -0.178 7.178 9 N -0.372 5.372 10 C 0.374 3.626 11 O -0.543 6.543 12 N -0.488 5.488 13 C 0.217 3.783 14 C -0.379 4.379 15 C 0.032 3.968 16 N -0.137 5.137 17 C 0.151 3.849 18 C -0.602 4.602 19 H 0.078 0.922 20 C -0.173 4.173 21 N -0.552 5.552 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.199 1.199 26 N -0.191 5.191 27 H 0.299 0.701 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.159 0.841 32 H 0.175 0.825 33 H 0.241 0.759 34 H 0.190 0.810 35 H 0.239 0.761 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.867 -1.912 -19.908 20.204 hybrid contribution -0.033 -0.382 0.998 1.069 sum -2.901 -2.294 -18.910 19.268 Atomic orbital electron populations 1.22077 0.92801 1.03292 1.02773 1.20792 0.95961 0.96531 0.82089 0.90994 1.23315 0.86161 1.08063 1.02160 1.21058 0.93989 0.72995 0.72973 1.93202 1.88099 1.84085 1.51898 1.93181 1.91101 1.81081 1.51508 1.93167 1.93596 1.34975 1.96086 1.44836 1.70734 1.13924 1.07709 1.16878 0.77903 0.83569 0.84211 1.90701 1.58813 1.18274 1.86477 1.68094 1.44005 1.38510 0.98167 1.18937 0.84819 0.89495 0.85021 1.22298 1.20616 0.97142 0.97825 1.23325 0.89612 0.91610 0.92281 1.47825 1.58223 1.01241 1.06422 1.19724 0.95968 1.00332 0.68908 1.21644 0.94112 1.52071 0.92347 0.92247 1.25607 0.99059 0.93958 0.98696 1.69967 1.24124 1.48832 1.12288 0.85396 0.79120 0.78060 0.78457 1.19696 1.20442 1.19893 1.44413 1.63474 1.08110 1.03146 0.70064 0.88746 0.90728 0.94506 0.84060 0.82453 0.75916 0.80985 0.76139 0.93940 0.91156 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.48 71.98 0.68 -2.01 16 2 C 0.15 3.23 2.51 44.99 0.11 3.34 16 3 H 0.07 1.93 7.10 -2.39 -0.02 1.91 16 4 C -0.16 -1.99 4.88 30.59 0.15 -1.84 16 5 C 0.44 8.74 3.16 71.98 0.23 8.97 16 6 F -0.19 -4.84 15.18 44.97 0.68 -4.16 16 7 F -0.19 -3.49 17.32 44.97 0.78 -2.71 16 8 F -0.20 -4.74 16.71 44.97 0.75 -3.99 16 9 N -0.72 -20.43 3.81 -458.35 -1.75 -22.18 16 10 C 0.68 26.21 8.44 179.35 1.51 27.72 16 11 O -0.66 -28.52 12.93 -4.79 -0.06 -28.58 16 12 N -0.72 -28.88 10.59 -322.57 -3.42 -32.30 16 13 C 0.47 18.58 8.07 133.95 1.08 19.66 16 14 C -0.35 -13.06 9.52 22.25 0.21 -12.85 16 15 C 0.18 5.83 11.45 83.22 0.95 6.78 16 16 N -0.35 -12.91 3.63 -350.82 -1.28 -14.18 16 17 C 0.27 11.06 6.19 85.63 0.53 11.59 16 18 C -0.56 -26.46 9.39 25.60 0.24 -26.22 16 19 H 0.06 2.89 7.81 -2.91 -0.02 2.86 16 20 C 0.03 1.39 5.46 84.65 0.46 1.85 16 21 N -0.91 -46.04 13.29 21.44 0.28 -45.76 16 22 Si 0.96 38.91 29.54 68.60 2.03 40.94 16 23 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 26 N -0.47 -16.84 7.38 -54.79 -0.40 -17.24 16 27 H 0.45 14.42 8.96 -213.28 -1.91 12.50 16 28 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.16 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.40 10.25 7.96 -92.70 -0.74 9.51 16 34 H 0.17 6.94 5.77 -2.91 -0.02 6.93 16 35 H 0.22 5.49 8.06 -2.91 -0.02 5.47 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -65.09 341.21 2.27 -62.82 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -1.52 Total: 30.34 kcal Atomic # 6 Polarization: 30.82 SS G_CDS: 6.16 Total: 36.99 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -6.56 Total: -131.66 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.06 Total: -28.58 kcal Atomic # 9 Polarization: -13.07 SS G_CDS: 2.21 Total: -10.85 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -65.09 2.27 -62.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343435285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.011 kcal (2) G-P(sol) polarization free energy of solvation -65.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds