Wall clock time and date at job start Tue Mar 31 2020 12:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46851 * 2 1 4 4 O 1.42903 * 109.47087 * 119.99929 * 2 1 3 5 5 C 1.35947 * 117.00157 * 275.01871 * 4 2 1 6 6 C 1.38665 * 120.06041 * 5.47282 * 5 4 2 7 7 C 1.38186 * 119.96540 * 179.71949 * 6 5 4 8 8 C 1.38261 * 120.09376 * 0.55868 * 7 6 5 9 9 C 1.38253 * 120.13045 * 359.71668 * 8 7 6 10 10 C 1.38337 * 120.02810 * 0.02562 * 9 8 7 11 11 F 1.35095 * 120.04609 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46902 * 239.99923 * 2 1 3 13 13 O 1.21274 * 119.99864 * 257.45040 * 12 2 1 14 14 N 1.34778 * 119.99984 * 77.18646 * 12 2 1 15 15 C 1.46506 * 119.99585 * 355.44220 * 14 12 2 16 16 C 1.50706 * 109.46653 * 95.17716 * 15 14 12 17 17 H 1.07992 * 120.00007 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99447 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00500 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99440 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47247 * 60.00167 * 20 18 16 22 22 H 1.48502 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47215 * 300.00091 * 20 18 16 24 24 C 1.46499 * 120.00306 * 175.45245 * 14 12 2 25 25 C 1.52997 * 109.47080 * 85.14044 * 24 14 12 26 26 C 1.47205 * 109.46663 * 180.02562 * 25 24 14 27 27 N 7.01230 * 98.63117 * 245.98446 * 2 1 3 28 28 H 1.08997 * 109.47103 * 306.11710 * 1 2 3 29 29 H 1.09001 * 109.47099 * 66.12603 * 1 2 3 30 30 H 1.09006 * 109.47169 * 186.11978 * 1 2 3 31 31 H 1.07991 * 120.01605 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.94907 * 180.27606 * 7 6 5 33 33 H 1.08002 * 119.93291 * 179.73990 * 8 7 6 34 34 H 1.08001 * 119.98612 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46932 * 215.17272 * 15 14 12 36 36 H 1.08994 * 109.47451 * 335.17822 * 15 14 12 37 37 H 0.97000 * 119.99905 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47057 * 205.14696 * 24 14 12 39 39 H 1.09004 * 109.46583 * 325.14168 * 24 14 12 40 40 H 1.08995 * 109.47300 * 300.00068 * 25 24 14 41 41 H 1.08991 * 109.47045 * 60.00552 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1122 0.0627 2.3047 6 6 1.6592 1.3731 2.3287 7 6 1.7625 2.1179 3.4880 8 6 2.3274 1.5623 4.6210 9 6 2.7855 0.2580 4.5998 10 6 2.6799 -0.4941 3.4436 11 9 3.1270 -1.7688 3.4227 12 6 2.0323 -0.7104 -1.2305 13 8 2.4496 -1.8461 -1.1471 14 7 2.0129 -0.0856 -2.4245 15 6 1.4123 1.2452 -2.5451 16 6 2.4873 2.2943 -2.4223 17 1 3.5148 1.9993 -2.2694 18 6 2.1587 3.6308 -2.5053 19 7 0.9073 3.9902 -2.6910 20 14 3.4911 4.9313 -2.3525 21 1 4.4945 4.7409 -3.4304 22 1 2.8824 6.2803 -2.4748 23 1 4.1553 4.8064 -1.0302 24 6 2.5920 -0.7373 -3.6019 25 6 1.5512 -1.6615 -4.2369 26 6 2.1334 -2.3167 -5.4196 27 7 2.5824 -2.8216 -6.3327 28 1 -0.3633 0.6057 0.8301 29 1 -0.3633 0.4159 -0.9397 30 1 -0.3634 -1.0219 0.1096 31 1 1.2223 1.8099 1.4430 32 1 1.4055 3.1370 3.5077 33 1 2.4106 2.1482 5.5245 34 1 3.2268 -0.1735 5.4861 35 1 0.9241 1.3370 -3.5153 36 1 0.6763 1.3848 -1.7533 37 1 0.6763 4.9304 -2.7490 38 1 2.8944 0.0205 -4.3246 39 1 3.4622 -1.3215 -3.3024 40 1 1.2489 -2.4192 -3.5141 41 1 0.6811 -1.0773 -4.5363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343870399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:45 Heat of formation + Delta-G solvation = -62.456124 kcal Electronic energy + Delta-G solvation = -26899.779533 eV Core-core repulsion = 22888.120723 eV Total energy + Delta-G solvation = -4011.658810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.62188 -40.40571 -39.14274 -37.31893 -36.59111 -35.33952 -33.10023 -32.30600 -30.77682 -30.51810 -29.42961 -27.38364 -25.06033 -23.92425 -23.18968 -22.55153 -21.79952 -18.82444 -18.44321 -17.52584 -17.00547 -16.83890 -16.53647 -16.13820 -15.81528 -15.52676 -15.02765 -14.80880 -14.67458 -14.60400 -14.31620 -14.07624 -13.83377 -13.18262 -12.96586 -12.84022 -12.59728 -12.45232 -12.26411 -12.23320 -12.21066 -11.86379 -11.71754 -11.51202 -11.41503 -11.14921 -11.02110 -10.87039 -10.76235 -10.65793 -10.29790 -9.93971 -9.25513 -8.89546 -8.71873 -8.12059 -8.05770 -6.36727 -4.45178 1.15135 1.29366 2.73879 2.82879 2.93112 3.13976 3.17003 3.19903 3.24012 3.61775 3.77631 4.18807 4.28354 4.36481 4.75376 4.82616 4.95573 4.99337 5.11119 5.20418 5.22153 5.27149 5.30868 5.36478 5.52553 5.63457 5.81269 5.83908 5.98386 6.03961 6.07715 6.17572 6.21232 6.22925 6.41755 6.47720 6.67295 6.92925 7.20437 7.43696 7.57029 7.68765 7.82148 8.00079 8.55752 8.70861 9.24310 10.69599 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.005022 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.070937 B = 5574.677959 C = 7916.193411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 H 0.117 0.883 4 O -0.283 6.283 5 C 0.106 3.894 6 C -0.181 4.181 7 C -0.088 4.088 8 C -0.137 4.137 9 C -0.121 4.121 10 C 0.064 3.936 11 F -0.133 7.133 12 C 0.525 3.475 13 O -0.544 6.544 14 N -0.591 5.591 15 C 0.223 3.777 16 C -0.548 4.548 17 H 0.063 0.937 18 C 0.070 3.930 19 N -0.888 5.888 20 Si 0.894 3.106 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.130 3.870 25 C -0.047 4.047 26 C 0.221 3.779 27 N -0.449 5.449 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.043 0.957 36 H 0.050 0.950 37 H 0.268 0.732 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.833 -1.864 10.570 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 H 0.135 0.865 4 O -0.195 6.195 5 C 0.059 3.941 6 C -0.199 4.199 7 C -0.106 4.106 8 C -0.155 4.155 9 C -0.140 4.140 10 C 0.044 3.956 11 F -0.112 7.112 12 C 0.311 3.689 13 O -0.421 6.421 14 N -0.322 5.322 15 C 0.104 3.896 16 C -0.587 4.587 17 H 0.081 0.919 18 C -0.134 4.134 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.005 3.995 25 C -0.088 4.088 26 C -0.097 4.097 27 N -0.127 5.127 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.018 -3.296 9.167 9.948 hybrid contribution 0.489 1.199 0.294 1.328 sum -1.529 -2.097 9.461 9.810 Atomic orbital electron populations 1.22412 0.92720 1.03536 1.04686 1.22360 0.95835 0.98276 0.82891 0.86537 1.86214 1.80786 1.36795 1.15696 1.19113 0.96860 0.91367 0.86728 1.21445 1.04683 0.92969 1.00813 1.21054 0.97575 0.99947 0.92005 1.20886 1.00937 0.94587 0.99082 1.20959 1.01715 0.94893 0.96402 1.17012 1.03972 0.81019 0.93600 1.91499 1.87205 1.35523 1.96976 1.19872 0.78717 0.86050 0.84261 1.90666 1.47484 1.18016 1.85976 1.48079 1.58167 1.19917 1.06078 1.19792 0.94115 0.76253 0.99417 1.21451 0.94635 0.90710 1.51882 0.91888 1.24903 0.95593 0.98508 0.94396 1.69884 1.16765 1.17731 1.48120 0.86609 0.81791 0.80423 0.79089 1.19996 1.21019 1.19952 1.21136 0.94564 0.95755 0.88017 1.19783 1.00002 0.99444 0.89566 1.29086 0.93341 0.93136 0.94129 1.81178 1.09311 1.10241 1.11954 0.91045 0.88836 0.91234 0.83465 0.85007 0.85140 0.84407 0.93917 0.93229 0.92227 0.88740 0.90241 0.87100 0.86994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 8.82 37.16 0.33 -2.16 16 2 C 0.07 1.12 1.80 -27.88 -0.05 1.07 16 3 H 0.12 2.07 5.40 -51.93 -0.28 1.79 16 4 O -0.28 -5.16 9.26 -38.85 -0.36 -5.52 16 5 C 0.11 1.70 6.61 -39.18 -0.26 1.45 16 6 C -0.18 -2.52 8.31 -39.44 -0.33 -2.84 16 7 C -0.09 -1.01 10.04 -39.59 -0.40 -1.41 16 8 C -0.14 -1.43 10.04 -39.57 -0.40 -1.82 16 9 C -0.12 -1.42 10.02 -39.54 -0.40 -1.81 16 10 C 0.06 0.97 7.31 -39.30 -0.29 0.68 16 11 F -0.13 -2.22 17.11 2.25 0.04 -2.18 16 12 C 0.52 9.80 6.93 -10.98 -0.08 9.72 16 13 O -0.54 -11.45 16.28 -13.71 -0.22 -11.68 16 14 N -0.59 -10.37 2.47 -175.05 -0.43 -10.80 16 15 C 0.22 4.38 4.65 -5.19 -0.02 4.35 16 16 C -0.55 -12.49 9.09 -34.44 -0.31 -12.80 16 17 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 18 C 0.07 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -21.72 13.29 55.43 0.74 -20.98 16 20 Si 0.89 18.91 29.54 -169.99 -5.02 13.88 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C 0.13 2.00 5.30 -4.04 -0.02 1.97 16 25 C -0.05 -0.58 5.99 -29.52 -0.18 -0.76 16 26 C 0.22 3.14 15.43 -20.76 -0.32 2.81 16 27 N -0.45 -7.44 18.54 42.15 0.78 -6.66 16 28 H 0.07 0.90 6.85 -51.93 -0.36 0.54 16 29 H 0.09 1.31 5.90 -51.93 -0.31 1.00 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.15 2.04 5.34 -52.49 -0.28 1.76 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.04 0.87 8.11 -51.93 -0.42 0.44 16 36 H 0.05 0.96 4.35 -51.93 -0.23 0.74 16 37 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 38 H 0.09 1.43 8.04 -51.93 -0.42 1.02 16 39 H 0.08 1.27 7.65 -51.93 -0.40 0.87 16 40 H 0.11 1.37 8.12 -51.93 -0.42 0.95 16 41 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -28.68 359.93 -6.64 -35.31 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.77 Total: 3.20 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.82 Total: 0.00 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 1.09 Total: -38.45 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.58 Total: -17.19 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.68 -6.64 -35.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343870399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.143 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds