Wall clock time and date at job start Tue Mar 31 2020 12:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46851 * 2 1 4 4 O 1.42903 * 109.47087 * 119.99929 * 2 1 3 5 5 C 1.35947 * 117.00157 * 275.01871 * 4 2 1 6 6 C 1.38665 * 120.06041 * 5.47282 * 5 4 2 7 7 C 1.38186 * 119.96540 * 179.71949 * 6 5 4 8 8 C 1.38261 * 120.09376 * 0.55868 * 7 6 5 9 9 C 1.38253 * 120.13045 * 359.71668 * 8 7 6 10 10 C 1.38337 * 120.02810 * 0.02562 * 9 8 7 11 11 F 1.35095 * 120.04609 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46902 * 239.99923 * 2 1 3 13 13 O 1.21274 * 119.99864 * 257.45040 * 12 2 1 14 14 N 1.34778 * 119.99984 * 77.18646 * 12 2 1 15 15 C 1.46506 * 119.99585 * 355.44220 * 14 12 2 16 16 C 1.50706 * 109.46653 * 95.17716 * 15 14 12 17 17 H 1.07992 * 120.00007 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99447 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00500 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99440 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47247 * 60.00167 * 20 18 16 22 22 H 1.48502 * 109.46892 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47215 * 300.00091 * 20 18 16 24 24 C 1.46499 * 120.00306 * 175.45245 * 14 12 2 25 25 C 1.52997 * 109.47080 * 85.14044 * 24 14 12 26 26 C 1.47205 * 109.46663 * 180.02562 * 25 24 14 27 27 N 7.01230 * 98.63117 * 245.98446 * 2 1 3 28 28 H 1.08997 * 109.47103 * 306.11710 * 1 2 3 29 29 H 1.09001 * 109.47099 * 66.12603 * 1 2 3 30 30 H 1.09006 * 109.47169 * 186.11978 * 1 2 3 31 31 H 1.07991 * 120.01605 * 359.97438 * 6 5 4 32 32 H 1.07999 * 119.94907 * 180.27606 * 7 6 5 33 33 H 1.08002 * 119.93291 * 179.73990 * 8 7 6 34 34 H 1.08001 * 119.98612 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46932 * 215.17272 * 15 14 12 36 36 H 1.08994 * 109.47451 * 335.17822 * 15 14 12 37 37 H 0.97000 * 119.99905 * 179.97438 * 19 18 16 38 38 H 1.09001 * 109.47057 * 205.14696 * 24 14 12 39 39 H 1.09004 * 109.46583 * 325.14168 * 24 14 12 40 40 H 1.08995 * 109.47300 * 300.00068 * 25 24 14 41 41 H 1.08991 * 109.47045 * 60.00552 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.1122 0.0627 2.3047 6 6 1.6592 1.3731 2.3287 7 6 1.7625 2.1179 3.4880 8 6 2.3274 1.5623 4.6210 9 6 2.7855 0.2580 4.5998 10 6 2.6799 -0.4941 3.4436 11 9 3.1270 -1.7688 3.4227 12 6 2.0323 -0.7104 -1.2305 13 8 2.4496 -1.8461 -1.1471 14 7 2.0129 -0.0856 -2.4245 15 6 1.4123 1.2452 -2.5451 16 6 2.4873 2.2943 -2.4223 17 1 3.5148 1.9993 -2.2694 18 6 2.1587 3.6308 -2.5053 19 7 0.9073 3.9902 -2.6910 20 14 3.4911 4.9313 -2.3525 21 1 4.4945 4.7409 -3.4304 22 1 2.8824 6.2803 -2.4748 23 1 4.1553 4.8064 -1.0302 24 6 2.5920 -0.7373 -3.6019 25 6 1.5512 -1.6615 -4.2369 26 6 2.1334 -2.3167 -5.4196 27 7 2.5824 -2.8216 -6.3327 28 1 -0.3633 0.6057 0.8301 29 1 -0.3633 0.4159 -0.9397 30 1 -0.3634 -1.0219 0.1096 31 1 1.2223 1.8099 1.4430 32 1 1.4055 3.1370 3.5077 33 1 2.4106 2.1482 5.5245 34 1 3.2268 -0.1735 5.4861 35 1 0.9241 1.3370 -3.5153 36 1 0.6763 1.3848 -1.7533 37 1 0.6763 4.9304 -2.7490 38 1 2.8944 0.0205 -4.3246 39 1 3.4622 -1.3215 -3.3024 40 1 1.2489 -2.4192 -3.5141 41 1 0.6811 -1.0773 -4.5363 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343870399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:43 Heat of formation + Delta-G solvation = -76.089912 kcal Electronic energy + Delta-G solvation = -26900.370739 eV Core-core repulsion = 22888.120723 eV Total energy + Delta-G solvation = -4012.250015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.80029 -41.69309 -40.41830 -38.43625 -37.84634 -36.85206 -34.72529 -33.66523 -31.96502 -31.55976 -30.48780 -29.05018 -26.32232 -25.28527 -24.61706 -23.62246 -22.95095 -20.19223 -19.62663 -18.84371 -18.44499 -18.06369 -17.95054 -17.39033 -17.02782 -16.86697 -16.30987 -16.26983 -15.85982 -15.80666 -15.46014 -15.34827 -15.09356 -14.46427 -14.36853 -14.04859 -13.99095 -13.68271 -13.65083 -13.47025 -13.41735 -13.06911 -12.91472 -12.86954 -12.74423 -12.59207 -12.44263 -12.11956 -12.07810 -11.95166 -11.78341 -11.62432 -10.75920 -10.48943 -9.89465 -9.59837 -9.19962 -8.17115 -6.28836 0.16077 0.29181 1.41316 1.44700 1.49643 1.53262 1.54964 1.76732 1.86813 2.40500 2.53611 2.64520 3.11737 3.15842 3.27664 3.50248 3.81790 3.88340 3.99674 4.01955 4.11423 4.12205 4.29792 4.36390 4.50289 4.52439 4.68542 4.71350 4.81090 4.90072 5.00689 5.03011 5.10759 5.13474 5.29763 5.35177 5.47377 5.63249 5.74792 5.80744 6.09047 6.26312 6.46984 6.53151 6.81465 7.18172 7.42954 8.87682 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009071 B = 0.005022 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.070937 B = 5574.677959 C = 7916.193411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 H 0.106 0.894 4 O -0.310 6.310 5 C 0.076 3.924 6 C -0.190 4.190 7 C -0.085 4.085 8 C -0.121 4.121 9 C -0.113 4.113 10 C 0.033 3.967 11 F -0.151 7.151 12 C 0.521 3.479 13 O -0.572 6.572 14 N -0.585 5.585 15 C 0.234 3.766 16 C -0.553 4.553 17 H 0.049 0.951 18 C 0.037 3.963 19 N -0.908 5.908 20 Si 0.938 3.062 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.274 1.274 24 C 0.125 3.875 25 C -0.031 4.031 26 C 0.245 3.755 27 N -0.489 5.489 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.160 0.840 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.268 0.732 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.118 0.882 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -0.461 12.218 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.010 3.990 3 H 0.124 0.876 4 O -0.224 6.224 5 C 0.030 3.970 6 C -0.209 4.209 7 C -0.103 4.103 8 C -0.139 4.139 9 C -0.131 4.131 10 C 0.013 3.987 11 F -0.130 7.130 12 C 0.308 3.692 13 O -0.452 6.452 14 N -0.316 5.316 15 C 0.114 3.886 16 C -0.592 4.592 17 H 0.067 0.933 18 C -0.165 4.165 19 N -0.546 5.546 20 Si 0.764 3.236 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.199 1.199 24 C 0.001 3.999 25 C -0.072 4.072 26 C -0.072 4.072 27 N -0.167 5.167 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.160 0.840 32 H 0.177 0.823 33 H 0.190 0.810 34 H 0.184 0.816 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.570 -1.886 10.811 11.271 hybrid contribution 0.706 0.813 -0.121 1.084 sum -1.863 -1.073 10.690 10.904 Atomic orbital electron populations 1.22357 0.90629 1.04084 1.05357 1.22315 0.97380 0.97063 0.82223 0.87638 1.86154 1.81693 1.37990 1.16537 1.19423 0.98847 0.92402 0.86363 1.21520 1.05106 0.92435 1.01830 1.21463 0.96610 1.00893 0.91306 1.21377 0.98503 0.94022 1.00023 1.21357 1.00678 0.95144 0.95942 1.17515 1.05422 0.80944 0.94820 1.91442 1.87633 1.36814 1.97138 1.20237 0.78197 0.85805 0.84939 1.90643 1.48866 1.19275 1.86413 1.48014 1.57767 1.19253 1.06570 1.19591 0.93345 0.76267 0.99406 1.21644 0.94722 0.91626 1.51170 0.93257 1.25370 0.96816 0.99821 0.94515 1.69934 1.17646 1.17949 1.49117 0.85919 0.80001 0.78950 0.78687 1.20503 1.20719 1.19923 1.21229 0.95137 0.96118 0.87433 1.19711 0.99588 0.99139 0.88780 1.29214 0.92256 0.92118 0.93655 1.81204 1.10498 1.11630 1.13377 0.89543 0.88624 0.90915 0.83996 0.82282 0.81041 0.81647 0.94031 0.92622 0.92225 0.88594 0.91184 0.86437 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 8.82 71.98 0.63 -4.02 16 2 C 0.07 2.39 1.80 29.85 0.05 2.45 16 3 H 0.11 3.82 5.40 -2.39 -0.01 3.81 16 4 O -0.31 -11.68 9.26 -74.52 -0.69 -12.37 16 5 C 0.08 2.45 6.61 22.53 0.15 2.60 16 6 C -0.19 -5.15 8.31 22.36 0.19 -4.97 16 7 C -0.08 -1.71 10.04 22.26 0.22 -1.49 16 8 C -0.12 -2.07 10.04 22.28 0.22 -1.84 16 9 C -0.11 -2.37 10.02 22.30 0.22 -2.15 16 10 C 0.03 0.98 7.31 22.45 0.16 1.15 16 11 F -0.15 -5.18 17.11 44.97 0.77 -4.41 16 12 C 0.52 19.70 6.93 87.66 0.61 20.30 16 13 O -0.57 -24.59 16.28 15.42 0.25 -24.34 16 14 N -0.59 -20.47 2.47 -826.14 -2.04 -22.51 16 15 C 0.23 9.04 4.65 85.63 0.40 9.44 16 16 C -0.55 -25.05 9.09 25.60 0.23 -24.81 16 17 H 0.05 2.34 7.81 -2.91 -0.02 2.31 16 18 C 0.04 1.70 5.46 84.66 0.46 2.17 16 19 N -0.91 -43.67 13.29 21.45 0.28 -43.39 16 20 Si 0.94 38.18 29.54 68.60 2.03 40.20 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 24 C 0.13 3.79 5.30 86.38 0.46 4.25 16 25 C -0.03 -0.74 5.99 28.79 0.17 -0.57 16 26 C 0.24 6.74 15.43 89.44 1.38 8.12 16 27 N -0.49 -16.02 18.54 20.01 0.37 -15.65 16 28 H 0.09 2.12 6.85 -2.39 -0.02 2.10 16 29 H 0.10 2.59 5.90 -2.39 -0.01 2.58 16 30 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.14 3.90 5.34 -2.92 -0.02 3.89 16 32 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.04 1.64 8.11 -2.39 -0.02 1.62 16 36 H 0.06 2.12 4.35 -2.39 -0.01 2.11 16 37 H 0.27 12.47 8.31 -92.71 -0.77 11.70 16 38 H 0.10 2.87 8.04 -2.39 -0.02 2.85 16 39 H 0.07 2.26 7.65 -2.38 -0.02 2.24 16 40 H 0.12 2.76 8.12 -2.39 -0.02 2.74 16 41 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -62.35 359.93 7.62 -54.74 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.07 Total: 17.10 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 5.57 Total: 10.63 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -1.38 Total: -81.54 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -0.44 Total: -36.71 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.77 Total: -4.41 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Total: -62.35 7.62 -54.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343870399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.354 kcal (2) G-P(sol) polarization free energy of solvation -62.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds