Wall clock time and date at job start Tue Mar 31 2020 12:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 O 1.42902 * 109.47297 * 240.00000 * 2 1 3 5 5 C 1.35962 * 117.00015 * 85.75144 * 4 2 1 6 6 C 1.38662 * 120.06097 * 354.82783 * 5 4 2 7 7 C 1.38174 * 119.96949 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.09635 * 0.02562 * 7 6 5 9 9 C 1.38255 * 120.12392 * 359.97438 * 8 7 6 10 10 C 1.38331 * 120.03092 * 0.27523 * 9 8 7 11 11 F 1.35103 * 120.05237 * 179.72871 * 10 9 8 12 12 C 1.50701 * 109.47156 * 120.00194 * 2 1 3 13 13 O 1.21280 * 119.99892 * 105.50139 * 12 2 1 14 14 N 1.34773 * 120.00174 * 285.50551 * 12 2 1 15 15 C 1.46503 * 119.99492 * 5.02086 * 14 12 2 16 16 C 1.50703 * 109.46714 * 95.57388 * 15 14 12 17 17 H 1.07995 * 120.00317 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99881 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00190 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47181 * 119.99875 * 20 18 16 23 23 H 1.48498 * 109.47432 * 240.00164 * 20 18 16 24 24 C 1.46492 * 120.00237 * 185.02386 * 14 12 2 25 25 C 1.53005 * 109.47321 * 94.22112 * 24 14 12 26 26 C 1.47196 * 109.47571 * 184.89539 * 25 24 14 27 27 N 6.96549 * 120.75768 * 104.73272 * 2 1 3 28 28 H 1.09003 * 109.47316 * 65.60728 * 1 2 3 29 29 H 1.08999 * 109.47224 * 185.59905 * 1 2 3 30 30 H 1.08997 * 109.47354 * 305.60356 * 1 2 3 31 31 H 1.08007 * 120.01368 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.95531 * 180.02562 * 7 6 5 33 33 H 1.07996 * 119.93954 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.98347 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46927 * 215.56791 * 15 14 12 36 36 H 1.08995 * 109.47664 * 335.57050 * 15 14 12 37 37 H 0.96997 * 120.00231 * 179.97438 * 19 18 16 38 38 H 1.09005 * 109.47457 * 214.22096 * 24 14 12 39 39 H 1.09005 * 109.47429 * 334.22602 * 24 14 12 40 40 H 1.08996 * 109.47284 * 304.90311 * 25 24 14 41 41 H 1.09007 * 109.46699 * 64.89633 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1275 0.0667 -2.3007 6 6 1.6947 1.3839 -2.3198 7 6 1.8183 2.1344 -3.4734 8 6 2.3724 1.5736 -4.6093 9 6 2.8052 0.2607 -4.5946 10 6 2.6793 -0.4970 -3.4441 11 9 3.0970 -1.7817 -3.4310 12 6 2.0323 -0.7105 1.2304 13 8 2.4991 -1.8260 1.1384 14 7 1.9628 -0.1062 2.4331 15 6 1.2999 1.1939 2.5623 16 6 -0.1280 0.9886 2.9982 17 1 -0.5042 -0.0104 3.1622 18 6 -0.9541 2.0761 3.1878 19 7 -0.4958 3.2926 2.9886 20 14 -2.7242 1.8216 3.7274 21 1 -2.9905 0.3689 3.8823 22 1 -2.9493 2.5068 5.0255 23 1 -3.6399 2.3868 2.7040 24 6 2.5500 -0.7493 3.6111 25 6 3.9732 -0.2282 3.8204 26 6 4.6048 -0.9585 4.9315 27 7 5.0922 -1.5222 5.7889 28 1 -0.3634 0.4244 -0.9359 29 1 -0.3633 -1.0227 0.1003 30 1 -0.3634 0.5983 0.8355 31 1 1.2613 1.8231 -1.4334 32 1 1.4815 3.1604 -3.4879 33 1 2.4682 2.1626 -5.5094 34 1 3.2381 -0.1749 -5.4831 35 1 1.8234 1.7964 3.3047 36 1 1.3161 1.7072 1.6009 37 1 -1.0771 4.0577 3.1215 38 1 1.9463 -0.5199 4.4892 39 1 2.5768 -1.8286 3.4604 40 1 4.5531 -0.3794 2.9100 41 1 3.9396 0.8353 4.0572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343870409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:51 Heat of formation + Delta-G solvation = -63.336597 kcal Electronic energy + Delta-G solvation = -26834.583207 eV Core-core repulsion = 22822.886217 eV Total energy + Delta-G solvation = -4011.696990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.65381 -40.42118 -39.15503 -37.34378 -36.61448 -35.37308 -33.17946 -32.16809 -30.78401 -30.51909 -29.39493 -27.47370 -25.03666 -23.74083 -23.29252 -22.58184 -21.83584 -18.80432 -18.50693 -17.53727 -17.04256 -16.79663 -16.55654 -16.17169 -15.81168 -15.59021 -15.00172 -14.85586 -14.70546 -14.59992 -14.36001 -14.07068 -13.71740 -13.22073 -12.90309 -12.86055 -12.62166 -12.44258 -12.33898 -12.11579 -12.05794 -11.84733 -11.71300 -11.51838 -11.36704 -11.10442 -11.01269 -10.77138 -10.75486 -10.70599 -10.30083 -9.94055 -9.26490 -8.95076 -8.74515 -8.14848 -8.06425 -6.39756 -4.46845 1.09470 1.24581 2.69121 2.91894 2.94512 3.06762 3.10278 3.21096 3.25636 3.56188 3.77153 4.16803 4.25283 4.35911 4.70372 4.79762 4.92776 4.97406 5.03917 5.16903 5.23459 5.26136 5.29626 5.38326 5.48307 5.61307 5.95473 5.96260 6.01143 6.08625 6.17032 6.20175 6.21722 6.36093 6.42565 6.63355 6.79467 6.93647 7.19644 7.41969 7.55301 7.67752 7.79430 7.98941 8.54814 8.70627 9.20932 10.66344 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004689 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.558309 B = 5970.492176 C = 8202.655696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.074 3.926 3 H 0.100 0.900 4 O -0.284 6.284 5 C 0.108 3.892 6 C -0.184 4.184 7 C -0.087 4.087 8 C -0.138 4.138 9 C -0.120 4.120 10 C 0.063 3.937 11 F -0.133 7.133 12 C 0.524 3.476 13 O -0.544 6.544 14 N -0.591 5.591 15 C 0.229 3.771 16 C -0.542 4.542 17 H 0.067 0.933 18 C 0.069 3.931 19 N -0.885 5.885 20 Si 0.893 3.107 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.126 3.874 25 C -0.045 4.045 26 C 0.221 3.779 27 N -0.448 5.448 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.146 0.854 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.042 0.958 36 H 0.041 0.959 37 H 0.267 0.733 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.586 1.801 -11.391 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.015 3.985 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.061 3.939 6 C -0.203 4.203 7 C -0.106 4.106 8 C -0.156 4.156 9 C -0.139 4.139 10 C 0.043 3.957 11 F -0.112 7.112 12 C 0.311 3.689 13 O -0.421 6.421 14 N -0.323 5.323 15 C 0.110 3.890 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.720 3.280 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C 0.001 3.999 25 C -0.087 4.087 26 C -0.097 4.097 27 N -0.126 5.126 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.558 0.316 -10.095 11.081 hybrid contribution -1.275 0.351 0.041 1.323 sum 3.283 0.667 -10.054 10.597 Atomic orbital electron populations 1.22667 0.91452 1.04796 1.05760 1.22330 0.96998 0.96461 0.82721 0.88300 1.86236 1.80702 1.36723 1.16019 1.19130 0.96717 0.91208 0.86886 1.21409 1.04916 0.92989 1.00989 1.21045 0.97478 1.00005 0.92025 1.20887 1.01170 0.94506 0.99025 1.20971 1.01621 0.94778 0.96481 1.17025 1.04564 0.80523 0.93544 1.91507 1.88112 1.34569 1.96966 1.19897 0.78602 0.86000 0.84423 1.90672 1.46428 1.18893 1.86148 1.48036 1.55291 1.23344 1.05642 1.19654 0.92561 0.78003 0.98799 1.21472 0.95496 0.93639 1.47422 0.91502 1.24926 0.98963 0.94904 0.94701 1.69906 1.36604 0.98040 1.47707 0.86498 0.84138 0.78722 0.78594 1.19473 1.20741 1.20674 1.21137 0.90471 0.98636 0.89677 1.19767 0.96963 0.99769 0.92186 1.29059 0.93277 0.93365 0.94008 1.81183 1.09837 1.10018 1.11541 0.92047 0.91840 0.85210 0.83632 0.85002 0.85118 0.84388 0.93979 0.94069 0.92282 0.88878 0.89647 0.87473 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.18 8.88 37.15 0.33 -2.85 16 2 C 0.07 1.26 1.80 -27.89 -0.05 1.21 16 3 H 0.10 1.53 4.92 -51.93 -0.26 1.28 16 4 O -0.28 -5.14 9.24 -39.10 -0.36 -5.50 16 5 C 0.11 1.66 6.59 -39.18 -0.26 1.40 16 6 C -0.18 -2.39 8.26 -39.45 -0.33 -2.72 16 7 C -0.09 -0.92 10.04 -39.59 -0.40 -1.31 16 8 C -0.14 -1.32 10.04 -39.56 -0.40 -1.72 16 9 C -0.12 -1.32 10.02 -39.54 -0.40 -1.72 16 10 C 0.06 0.92 7.31 -39.30 -0.29 0.63 16 11 F -0.13 -2.17 17.11 2.25 0.04 -2.13 16 12 C 0.52 9.88 7.00 -10.99 -0.08 9.80 16 13 O -0.54 -11.75 16.06 -13.92 -0.22 -11.98 16 14 N -0.59 -10.32 2.46 -175.06 -0.43 -10.75 16 15 C 0.23 4.40 4.69 -5.19 -0.02 4.38 16 16 C -0.54 -11.86 7.00 -34.44 -0.24 -12.10 16 17 H 0.07 1.52 7.81 -52.49 -0.41 1.11 16 18 C 0.07 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -21.22 13.29 55.43 0.74 -20.48 16 20 Si 0.89 18.48 29.54 -169.99 -5.02 13.46 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 C 0.13 1.91 5.47 -4.04 -0.02 1.89 16 25 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 26 C 0.22 3.11 15.43 -20.76 -0.32 2.79 16 27 N -0.45 -7.40 18.54 42.15 0.78 -6.61 16 28 H 0.06 0.91 7.10 -51.93 -0.37 0.54 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.13 2.42 4.47 -51.93 -0.23 2.18 16 31 H 0.15 1.85 5.55 -52.48 -0.29 1.56 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.04 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.04 0.80 5.53 -51.93 -0.29 0.51 16 37 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 38 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 39 H 0.09 1.37 7.24 -51.93 -0.38 1.00 16 40 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -28.18 357.31 -6.57 -34.75 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.73 Total: 3.42 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.74 Total: 0.44 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 1.09 Total: -37.84 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.58 Total: -17.48 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.18 -6.57 -34.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343870409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.587 kcal (2) G-P(sol) polarization free energy of solvation -28.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds