Wall clock time and date at job start Tue Mar 31 2020 12:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.47281 * 2 1 4 4 O 1.42902 * 109.47297 * 240.00000 * 2 1 3 5 5 C 1.35962 * 117.00015 * 85.75144 * 4 2 1 6 6 C 1.38662 * 120.06097 * 354.82783 * 5 4 2 7 7 C 1.38174 * 119.96949 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.09635 * 0.02562 * 7 6 5 9 9 C 1.38255 * 120.12392 * 359.97438 * 8 7 6 10 10 C 1.38331 * 120.03092 * 0.27523 * 9 8 7 11 11 F 1.35103 * 120.05237 * 179.72871 * 10 9 8 12 12 C 1.50701 * 109.47156 * 120.00194 * 2 1 3 13 13 O 1.21280 * 119.99892 * 105.50139 * 12 2 1 14 14 N 1.34773 * 120.00174 * 285.50551 * 12 2 1 15 15 C 1.46503 * 119.99492 * 5.02086 * 14 12 2 16 16 C 1.50703 * 109.46714 * 95.57388 * 15 14 12 17 17 H 1.07995 * 120.00317 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99881 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00190 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47181 * 119.99875 * 20 18 16 23 23 H 1.48498 * 109.47432 * 240.00164 * 20 18 16 24 24 C 1.46492 * 120.00237 * 185.02386 * 14 12 2 25 25 C 1.53005 * 109.47321 * 94.22112 * 24 14 12 26 26 C 1.47196 * 109.47571 * 184.89539 * 25 24 14 27 27 N 6.96549 * 120.75768 * 104.73272 * 2 1 3 28 28 H 1.09003 * 109.47316 * 65.60728 * 1 2 3 29 29 H 1.08999 * 109.47224 * 185.59905 * 1 2 3 30 30 H 1.08997 * 109.47354 * 305.60356 * 1 2 3 31 31 H 1.08007 * 120.01368 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.95531 * 180.02562 * 7 6 5 33 33 H 1.07996 * 119.93954 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.98347 * 180.02562 * 9 8 7 35 35 H 1.09002 * 109.46927 * 215.56791 * 15 14 12 36 36 H 1.08995 * 109.47664 * 335.57050 * 15 14 12 37 37 H 0.96997 * 120.00231 * 179.97438 * 19 18 16 38 38 H 1.09005 * 109.47457 * 214.22096 * 24 14 12 39 39 H 1.09005 * 109.47429 * 334.22602 * 24 14 12 40 40 H 1.08996 * 109.47284 * 304.90311 * 25 24 14 41 41 H 1.09007 * 109.46699 * 64.89633 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1275 0.0667 -2.3007 6 6 1.6947 1.3839 -2.3198 7 6 1.8183 2.1344 -3.4734 8 6 2.3724 1.5736 -4.6093 9 6 2.8052 0.2607 -4.5946 10 6 2.6793 -0.4970 -3.4441 11 9 3.0970 -1.7817 -3.4310 12 6 2.0323 -0.7105 1.2304 13 8 2.4991 -1.8260 1.1384 14 7 1.9628 -0.1062 2.4331 15 6 1.2999 1.1939 2.5623 16 6 -0.1280 0.9886 2.9982 17 1 -0.5042 -0.0104 3.1622 18 6 -0.9541 2.0761 3.1878 19 7 -0.4958 3.2926 2.9886 20 14 -2.7242 1.8216 3.7274 21 1 -2.9905 0.3689 3.8823 22 1 -2.9493 2.5068 5.0255 23 1 -3.6399 2.3868 2.7040 24 6 2.5500 -0.7493 3.6111 25 6 3.9732 -0.2282 3.8204 26 6 4.6048 -0.9585 4.9315 27 7 5.0922 -1.5222 5.7889 28 1 -0.3634 0.4244 -0.9359 29 1 -0.3633 -1.0227 0.1003 30 1 -0.3634 0.5983 0.8355 31 1 1.2613 1.8231 -1.4334 32 1 1.4815 3.1604 -3.4879 33 1 2.4682 2.1626 -5.5094 34 1 3.2381 -0.1749 -5.4831 35 1 1.8234 1.7964 3.3047 36 1 1.3161 1.7072 1.6009 37 1 -1.0771 4.0577 3.1215 38 1 1.9463 -0.5199 4.4892 39 1 2.5768 -1.8286 3.4604 40 1 4.5531 -0.3794 2.9100 41 1 3.9396 0.8353 4.0572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343870409.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:49 Heat of formation + Delta-G solvation = -76.665858 kcal Electronic energy + Delta-G solvation = -26835.161207 eV Core-core repulsion = 22822.886217 eV Total energy + Delta-G solvation = -4012.274990 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -49.78643 -41.69757 -40.41068 -38.42832 -37.86252 -36.88525 -34.75950 -33.57281 -31.91256 -31.54360 -30.44200 -29.11584 -26.35713 -25.06436 -24.73291 -23.59541 -22.94978 -20.18438 -19.65806 -18.80798 -18.36558 -18.05274 -18.00290 -17.38298 -16.99606 -16.87415 -16.38170 -16.18044 -15.88862 -15.79169 -15.43770 -15.32316 -14.99227 -14.51436 -14.27752 -14.17383 -13.98856 -13.66338 -13.63297 -13.35626 -13.34295 -13.12385 -12.86477 -12.77850 -12.67827 -12.58428 -12.50120 -12.12591 -11.99543 -11.90652 -11.80997 -11.60426 -10.78870 -10.46883 -9.88513 -9.59053 -9.18642 -8.15677 -6.24781 0.17500 0.30532 1.42054 1.44546 1.51626 1.55999 1.63412 1.76617 1.78695 2.43553 2.53959 2.65714 3.13466 3.17077 3.29459 3.50095 3.75797 3.85715 3.99063 4.03681 4.10992 4.13700 4.31823 4.38335 4.52867 4.53896 4.71877 4.82529 4.86764 4.91938 5.01940 5.06011 5.15186 5.25941 5.31658 5.44093 5.48586 5.65393 5.76547 5.82836 6.10419 6.27626 6.47283 6.53024 6.84238 7.18294 7.44863 8.89606 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004689 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.558309 B = 5970.492176 C = 8202.655696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 H 0.114 0.886 4 O -0.313 6.313 5 C 0.075 3.925 6 C -0.191 4.191 7 C -0.081 4.081 8 C -0.122 4.122 9 C -0.113 4.113 10 C 0.031 3.969 11 F -0.153 7.153 12 C 0.520 3.480 13 O -0.577 6.577 14 N -0.585 5.585 15 C 0.240 3.760 16 C -0.538 4.538 17 H 0.054 0.946 18 C 0.038 3.962 19 N -0.908 5.908 20 Si 0.937 3.063 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.279 1.279 24 C 0.121 3.879 25 C -0.031 4.031 26 C 0.245 3.755 27 N -0.489 5.489 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.044 0.956 36 H 0.044 0.956 37 H 0.268 0.732 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 3.724 -13.144 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.021 3.979 3 H 0.131 0.869 4 O -0.226 6.226 5 C 0.029 3.971 6 C -0.210 4.210 7 C -0.099 4.099 8 C -0.139 4.139 9 C -0.131 4.131 10 C 0.011 3.989 11 F -0.132 7.132 12 C 0.307 3.693 13 O -0.457 6.457 14 N -0.316 5.316 15 C 0.120 3.880 16 C -0.577 4.577 17 H 0.072 0.928 18 C -0.164 4.164 19 N -0.546 5.546 20 Si 0.764 3.236 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.205 1.205 24 C -0.003 4.003 25 C -0.072 4.072 26 C -0.073 4.073 27 N -0.167 5.167 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.189 0.811 34 H 0.182 0.818 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.588 2.248 -11.842 12.897 hybrid contribution -1.293 -0.215 0.476 1.394 sum 3.295 2.033 -11.366 12.007 Atomic orbital electron populations 1.22519 0.91508 1.03673 1.05909 1.22232 0.96781 0.96755 0.82150 0.86879 1.86182 1.81517 1.38038 1.16912 1.19456 0.98921 0.92356 0.86367 1.21505 1.05096 0.92215 1.02141 1.21472 0.96215 1.01079 0.91163 1.21389 0.98653 0.93863 1.00043 1.21356 1.00649 0.95150 0.95947 1.17543 1.06154 0.80347 0.94810 1.91445 1.88571 1.36032 1.97138 1.20286 0.78080 0.85669 0.85238 1.90648 1.48078 1.20313 1.86669 1.47991 1.54808 1.22770 1.05986 1.19458 0.91333 0.78504 0.98737 1.21582 0.96741 0.92839 1.46530 0.92801 1.25341 1.01070 0.94890 0.95105 1.69948 1.37354 0.98375 1.48952 0.85824 0.81721 0.78014 0.78017 1.20067 1.21080 1.20511 1.21231 0.92175 0.98044 0.88876 1.19711 0.94890 1.00602 0.91986 1.29207 0.92286 0.92348 0.93424 1.81209 1.11200 1.11328 1.12961 0.90288 0.93143 0.86807 0.83809 0.81966 0.81051 0.81819 0.93820 0.93814 0.92286 0.88620 0.90783 0.86462 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.05 8.88 71.98 0.64 -5.41 16 2 C 0.08 2.74 1.80 29.85 0.05 2.79 16 3 H 0.11 3.48 4.92 -2.39 -0.01 3.47 16 4 O -0.31 -11.60 9.24 -74.50 -0.69 -12.28 16 5 C 0.08 2.30 6.59 22.53 0.15 2.45 16 6 C -0.19 -4.66 8.26 22.36 0.18 -4.47 16 7 C -0.08 -1.42 10.04 22.26 0.22 -1.19 16 8 C -0.12 -1.82 10.04 22.28 0.22 -1.60 16 9 C -0.11 -2.20 10.02 22.30 0.22 -1.97 16 10 C 0.03 0.89 7.31 22.45 0.16 1.06 16 11 F -0.15 -5.13 17.11 44.97 0.77 -4.36 16 12 C 0.52 19.83 7.00 87.66 0.61 20.44 16 13 O -0.58 -25.58 16.06 15.60 0.25 -25.33 16 14 N -0.58 -20.25 2.46 -826.15 -2.03 -22.28 16 15 C 0.24 9.03 4.69 85.63 0.40 9.43 16 16 C -0.54 -23.33 7.00 25.60 0.18 -23.15 16 17 H 0.05 2.46 7.81 -2.91 -0.02 2.43 16 18 C 0.04 1.71 5.46 84.66 0.46 2.17 16 19 N -0.91 -42.67 13.29 21.45 0.28 -42.39 16 20 Si 0.94 37.50 29.54 68.60 2.03 39.53 16 21 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 24 C 0.12 3.63 5.47 86.38 0.47 4.10 16 25 C -0.03 -0.72 6.03 28.79 0.17 -0.55 16 26 C 0.24 6.67 15.43 89.44 1.38 8.05 16 27 N -0.49 -15.95 18.54 20.00 0.37 -15.58 16 28 H 0.08 2.33 7.10 -2.39 -0.02 2.31 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.11 4.24 4.47 -2.39 -0.01 4.23 16 31 H 0.14 3.47 5.55 -2.91 -0.02 3.45 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 33 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.04 1.66 8.11 -2.39 -0.02 1.64 16 36 H 0.04 1.66 5.53 -2.39 -0.01 1.64 16 37 H 0.27 12.16 8.31 -92.71 -0.77 11.38 16 38 H 0.10 2.81 8.10 -2.38 -0.02 2.79 16 39 H 0.07 2.41 7.24 -2.38 -0.02 2.39 16 40 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.14 2.64 8.14 -2.38 -0.02 2.62 16 Total: -1.00 -61.75 357.31 7.60 -54.15 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 1.07 Total: 16.39 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: 5.54 Total: 12.15 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.37 Total: -80.24 kcal Atomic # 8 Polarization: -37.18 SS G_CDS: -0.44 Total: -37.62 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.77 Total: -4.36 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -61.75 7.60 -54.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343870409.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.516 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds