Wall clock time and date at job start Tue Mar 31 2020 13:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99802 * 2 1 4 4 H 1.48503 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47321 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47357 * 60.00585 * 3 2 1 7 7 C 1.37881 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46512 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47319 * 304.99360 * 10 9 7 12 12 N 1.46499 * 109.47422 * 64.99829 * 10 9 7 13 13 C 1.34775 * 120.00004 * 204.99421 * 12 10 9 14 14 O 1.21589 * 120.00010 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99824 * 179.97438 * 13 12 10 16 16 C 1.46494 * 119.99656 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.45363 * 325.22969 * 16 15 13 18 18 C 1.52948 * 109.60251 * 204.99847 * 16 15 13 19 19 C 1.53707 * 112.49058 * 209.96850 * 18 16 15 20 20 S 1.83387 * 104.97060 * 2.82929 * 19 18 16 21 21 C 1.55158 * 109.60332 * 85.46600 * 16 15 13 22 22 C 1.50702 * 109.46879 * 184.99980 * 10 9 7 23 23 C 1.38232 * 119.99845 * 279.72792 * 22 10 9 24 24 C 1.38237 * 120.00174 * 179.78436 * 23 22 10 25 25 C 1.38239 * 119.99725 * 0.44652 * 24 23 22 26 26 C 1.38237 * 120.00031 * 359.80184 * 25 24 23 27 27 C 1.38234 * 119.99781 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99630 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47191 * 59.99845 * 9 7 2 30 30 H 1.08994 * 109.46946 * 299.99224 * 9 7 2 31 31 H 0.96995 * 119.99555 * 25.00045 * 12 10 9 32 32 H 0.96995 * 119.99735 * 0.02562 * 15 13 12 33 33 H 1.08997 * 108.88313 * 89.17621 * 18 16 15 34 34 H 1.09000 * 108.88513 * 330.76639 * 18 16 15 35 35 H 1.08997 * 110.33731 * 121.70083 * 19 18 16 36 36 H 1.09001 * 110.33979 * 243.95133 * 19 18 16 37 37 H 1.08996 * 111.13027 * 43.45901 * 21 16 15 38 38 H 1.09000 * 111.16657 * 279.29153 * 21 16 15 39 39 H 1.08001 * 120.00435 * 359.97438 * 23 22 10 40 40 H 1.08001 * 120.00368 * 180.27038 * 24 23 22 41 41 H 1.08002 * 120.00295 * 179.83465 * 25 24 23 42 42 H 1.07995 * 120.00038 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.99995 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8414 12 7 3.0063 -3.6539 1.2523 13 6 4.2310 -4.2146 1.3000 14 8 4.7044 -4.7268 0.3040 15 7 4.9314 -4.2066 2.4515 16 6 6.2628 -4.8156 2.5032 17 1 6.2885 -5.6879 1.8502 18 6 6.5777 -5.2396 3.9386 19 6 8.0819 -5.1872 4.2506 20 16 8.8597 -4.5322 2.7245 21 6 7.3250 -3.7850 2.0375 22 6 1.4959 -4.9637 -0.1233 23 6 0.8991 -5.5261 0.9895 24 6 0.2079 -6.7178 0.8751 25 6 0.1214 -7.3517 -0.3503 26 6 0.7225 -6.7919 -1.4621 27 6 1.4098 -5.5979 -1.3486 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6288 -3.2451 2.0467 32 1 4.5539 -3.7977 3.2459 33 1 6.2208 -6.2580 4.0920 34 1 6.0514 -4.5770 4.6257 35 1 8.2716 -4.5180 5.0898 36 1 8.4585 -6.1865 4.4690 37 1 7.1372 -2.8033 2.4724 38 1 7.3682 -3.7285 0.9498 39 1 0.9701 -5.0330 1.9477 40 1 -0.2621 -7.1550 1.7436 41 1 -0.4164 -8.2841 -0.4393 42 1 0.6546 -7.2869 -2.4195 43 1 1.8792 -5.1602 -2.2173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349572281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:08 Heat of formation + Delta-G solvation = -14.349019 kcal Electronic energy + Delta-G solvation = -24527.149009 eV Core-core repulsion = 21083.789455 eV Total energy + Delta-G solvation = -3443.359553 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96575 -38.75340 -36.81221 -35.06115 -32.99725 -32.56534 -30.89822 -30.43858 -29.17090 -28.55928 -25.32207 -24.59681 -22.30041 -21.97580 -21.28514 -20.63539 -19.79906 -18.10926 -17.16335 -16.66482 -16.18189 -16.02777 -15.50237 -14.93610 -14.79861 -14.57782 -14.45074 -14.05748 -13.86497 -13.50294 -13.21779 -13.02263 -12.76383 -12.60368 -12.47706 -12.12115 -12.10861 -11.79653 -11.54399 -11.14618 -11.12419 -10.93899 -10.75295 -10.60978 -10.48227 -10.32060 -9.79561 -9.74176 -9.30046 -9.04986 -8.54192 -8.47849 -8.36679 -8.17775 -7.88237 -6.11324 -4.14513 1.61650 1.78563 1.81011 2.09700 3.06136 3.24005 3.33089 3.37157 3.59407 4.20092 4.33971 4.37897 4.48017 4.57187 4.66548 4.88618 5.02337 5.25599 5.26721 5.27753 5.30582 5.36347 5.38041 5.49855 5.54824 5.73567 5.83700 5.91310 5.94600 6.14802 6.35837 6.42522 6.54330 6.60413 6.84760 6.86056 6.92902 7.08505 7.24642 7.41237 7.49491 7.65216 7.85908 8.23804 8.44396 8.91814 9.02382 9.50645 10.99221 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008122 B = 0.004602 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.576307 B = 6082.415177 C = 8842.271365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.202 3.798 11 H 0.087 0.913 12 N -0.714 5.714 13 C 0.704 3.296 14 O -0.594 6.594 15 N -0.746 5.746 16 C 0.166 3.834 17 H 0.104 0.896 18 C -0.137 4.137 19 C -0.067 4.067 20 S -0.295 6.295 21 C -0.076 4.076 22 C -0.071 4.071 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.123 4.123 27 C -0.107 4.107 28 H 0.261 0.739 29 H 0.035 0.965 30 H 0.024 0.976 31 H 0.397 0.603 32 H 0.395 0.605 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.673 -12.195 8.731 16.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.556 4.556 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.097 3.903 11 H 0.105 0.895 12 N -0.366 5.366 13 C 0.404 3.596 14 O -0.472 6.472 15 N -0.402 5.402 16 C 0.058 3.942 17 H 0.122 0.878 18 C -0.176 4.176 19 C -0.215 4.215 20 S -0.070 6.070 21 C -0.226 4.226 22 C -0.072 4.072 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.231 0.769 32 H 0.229 0.771 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.077 -12.583 7.379 17.181 hybrid contribution -1.142 1.494 1.194 2.228 sum 7.936 -11.089 8.573 16.107 Atomic orbital electron populations 1.69970 1.06008 1.26682 1.50421 1.24987 0.94782 0.99208 0.95174 0.86554 0.80153 0.83788 0.77630 1.19770 1.20966 1.21072 1.21168 0.93111 0.90334 1.51024 0.92337 1.19405 0.93224 0.90203 0.98586 1.20128 0.92906 0.91704 0.85523 0.89530 1.45140 1.16061 1.60694 1.14722 1.16000 0.81151 0.79300 0.83164 1.90890 1.70685 1.51558 1.34050 1.45188 1.17941 1.64537 1.12563 1.21647 0.81027 0.95570 0.95974 0.87830 1.22136 0.95116 1.04004 0.96338 1.23805 0.95828 1.04471 0.97411 1.87942 1.19750 1.73100 1.26209 1.24922 0.91373 1.01186 1.05079 1.20593 0.96703 0.96628 0.93281 1.20879 0.97634 0.95576 0.98438 1.21033 0.99960 0.96089 0.97328 1.20989 1.01107 1.00020 0.93246 1.21042 0.98570 0.96213 0.98270 1.21022 0.99045 0.95048 0.97486 0.92931 0.94665 0.95759 0.76931 0.77092 0.89484 0.90258 0.88968 0.88106 0.88811 0.86845 0.86704 0.86839 0.86893 0.86629 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -13.47 8.84 -34.44 -0.30 -13.77 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.55 4.50 -27.88 -0.13 0.42 16 10 C 0.20 4.04 2.12 -69.08 -0.15 3.89 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.53 16 12 N -0.71 -12.35 4.02 -59.81 -0.24 -12.59 16 13 C 0.70 12.00 8.50 -86.92 -0.74 11.26 16 14 O -0.59 -12.34 15.66 5.29 0.08 -12.26 16 15 N -0.75 -9.28 5.10 -57.59 -0.29 -9.57 16 16 C 0.17 1.90 2.83 -66.82 -0.19 1.71 16 17 H 0.10 1.41 7.57 -51.93 -0.39 1.01 16 18 C -0.14 -1.08 6.02 -26.39 -0.16 -1.24 16 19 C -0.07 -0.52 7.38 37.52 0.28 -0.25 16 20 S -0.30 -3.39 23.23 -107.50 -2.50 -5.89 16 21 C -0.08 -0.92 7.13 38.30 0.27 -0.65 16 22 C -0.07 -1.30 4.91 -104.62 -0.51 -1.81 16 23 C -0.11 -1.77 9.33 -39.58 -0.37 -2.14 16 24 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 25 C -0.14 -1.92 10.05 -39.58 -0.40 -2.32 16 26 C -0.12 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.11 -1.87 9.67 -39.58 -0.38 -2.25 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 6.20 8.62 -40.82 -0.35 5.85 16 32 H 0.39 3.86 8.31 -40.82 -0.34 3.52 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.52 7.67 -51.93 -0.40 0.13 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 39 H 0.11 1.76 7.71 -52.49 -0.40 1.36 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 43 H 0.12 2.01 8.04 -52.48 -0.42 1.58 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -31.41 371.56 -11.77 -43.17 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -6.46 Total: 10.38 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.67 Total: -10.11 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.20 Total: -46.69 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.50 Total: -5.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.41 -11.77 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349572281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.825 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds