Wall clock time and date at job start Tue Mar 31 2020 13:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99802 * 2 1 4 4 H 1.48503 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47321 * 299.99984 * 3 2 1 6 6 H 1.48503 * 109.47357 * 60.00585 * 3 2 1 7 7 C 1.37881 * 119.99884 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99751 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99833 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46512 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.47319 * 304.99360 * 10 9 7 12 12 N 1.46499 * 109.47422 * 64.99829 * 10 9 7 13 13 C 1.34775 * 120.00004 * 204.99421 * 12 10 9 14 14 O 1.21589 * 120.00010 * 0.02562 * 13 12 10 15 15 N 1.34781 * 119.99824 * 179.97438 * 13 12 10 16 16 C 1.46494 * 119.99656 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.45363 * 325.22969 * 16 15 13 18 18 C 1.52948 * 109.60251 * 204.99847 * 16 15 13 19 19 C 1.53707 * 112.49058 * 209.96850 * 18 16 15 20 20 S 1.83387 * 104.97060 * 2.82929 * 19 18 16 21 21 C 1.55158 * 109.60332 * 85.46600 * 16 15 13 22 22 C 1.50702 * 109.46879 * 184.99980 * 10 9 7 23 23 C 1.38232 * 119.99845 * 279.72792 * 22 10 9 24 24 C 1.38237 * 120.00174 * 179.78436 * 23 22 10 25 25 C 1.38239 * 119.99725 * 0.44652 * 24 23 22 26 26 C 1.38237 * 120.00031 * 359.80184 * 25 24 23 27 27 C 1.38234 * 119.99781 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99630 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47191 * 59.99845 * 9 7 2 30 30 H 1.08994 * 109.46946 * 299.99224 * 9 7 2 31 31 H 0.96995 * 119.99555 * 25.00045 * 12 10 9 32 32 H 0.96995 * 119.99735 * 0.02562 * 15 13 12 33 33 H 1.08997 * 108.88313 * 89.17621 * 18 16 15 34 34 H 1.09000 * 108.88513 * 330.76639 * 18 16 15 35 35 H 1.08997 * 110.33731 * 121.70083 * 19 18 16 36 36 H 1.09001 * 110.33979 * 243.95133 * 19 18 16 37 37 H 1.08996 * 111.13027 * 43.45901 * 21 16 15 38 38 H 1.09000 * 111.16657 * 279.29153 * 21 16 15 39 39 H 1.08001 * 120.00435 * 359.97438 * 23 22 10 40 40 H 1.08001 * 120.00368 * 180.27038 * 24 23 22 41 41 H 1.08002 * 120.00295 * 179.83465 * 25 24 23 42 42 H 1.07995 * 120.00038 * 180.02562 * 26 25 24 43 43 H 1.08004 * 119.99995 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9294 -3.5552 -0.8414 12 7 3.0063 -3.6539 1.2523 13 6 4.2310 -4.2146 1.3000 14 8 4.7044 -4.7268 0.3040 15 7 4.9314 -4.2066 2.4515 16 6 6.2628 -4.8156 2.5032 17 1 6.2885 -5.6879 1.8502 18 6 6.5777 -5.2396 3.9386 19 6 8.0819 -5.1872 4.2506 20 16 8.8597 -4.5322 2.7245 21 6 7.3250 -3.7850 2.0375 22 6 1.4959 -4.9637 -0.1233 23 6 0.8991 -5.5261 0.9895 24 6 0.2079 -6.7178 0.8751 25 6 0.1214 -7.3517 -0.3503 26 6 0.7225 -6.7919 -1.4621 27 6 1.4098 -5.5979 -1.3486 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 2.6288 -3.2451 2.0467 32 1 4.5539 -3.7977 3.2459 33 1 6.2208 -6.2580 4.0920 34 1 6.0514 -4.5770 4.6257 35 1 8.2716 -4.5180 5.0898 36 1 8.4585 -6.1865 4.4690 37 1 7.1372 -2.8033 2.4724 38 1 7.3682 -3.7285 0.9498 39 1 0.9701 -5.0330 1.9477 40 1 -0.2621 -7.1550 1.7436 41 1 -0.4164 -8.2841 -0.4393 42 1 0.6546 -7.2869 -2.4195 43 1 1.8792 -5.1602 -2.2173 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349572281.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:08 Heat of formation + Delta-G solvation = -32.665123 kcal Electronic energy + Delta-G solvation = -24527.943254 eV Core-core repulsion = 21083.789455 eV Total energy + Delta-G solvation = -3444.153799 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31975 -39.98794 -37.89486 -36.59512 -34.74574 -33.91252 -32.13954 -31.65157 -30.55604 -29.87532 -26.80469 -25.74096 -23.78041 -23.38786 -22.42723 -21.71332 -21.22713 -19.42180 -18.62929 -18.05493 -17.56578 -17.12558 -16.73210 -16.44453 -16.18728 -15.95712 -15.54977 -15.26847 -14.95396 -14.77911 -14.50122 -14.20274 -14.16966 -13.97717 -13.65398 -13.49092 -13.33671 -12.97557 -12.92278 -12.64632 -12.59299 -12.47220 -12.13216 -11.89798 -11.85922 -11.57838 -11.30517 -11.29263 -11.13611 -10.58812 -10.30793 -9.78649 -9.71727 -9.49328 -8.79114 -8.20038 -6.29546 0.52904 0.58197 0.74206 1.28586 1.37438 1.41058 1.51711 1.84772 2.22778 2.39799 2.97213 3.13649 3.39956 3.52021 3.72842 3.92073 4.01214 4.05822 4.06684 4.14813 4.22899 4.34008 4.45385 4.52286 4.65064 4.67450 4.77483 4.79669 4.80957 4.93297 5.00489 5.14827 5.22090 5.30728 5.44508 5.49194 5.63120 5.64224 5.66365 5.79186 5.89184 6.11599 6.17891 6.22672 6.83340 7.17459 7.39519 7.66939 8.90836 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.008122 B = 0.004602 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.576307 B = 6082.415177 C = 8842.271365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.052 0.948 9 C 0.038 3.962 10 C 0.220 3.780 11 H 0.054 0.946 12 N -0.710 5.710 13 C 0.703 3.297 14 O -0.634 6.634 15 N -0.725 5.725 16 C 0.167 3.833 17 H 0.079 0.921 18 C -0.128 4.128 19 C -0.050 4.050 20 S -0.337 6.337 21 C -0.072 4.072 22 C -0.097 4.097 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.125 4.125 27 C -0.134 4.134 28 H 0.264 0.736 29 H 0.004 0.996 30 H 0.014 0.986 31 H 0.406 0.594 32 H 0.412 0.588 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 -13.476 11.187 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.000 4.000 10 C 0.114 3.886 11 H 0.073 0.927 12 N -0.363 5.363 13 C 0.403 3.597 14 O -0.516 6.516 15 N -0.383 5.383 16 C 0.059 3.941 17 H 0.097 0.903 18 C -0.167 4.167 19 C -0.198 4.198 20 S -0.112 6.112 21 C -0.222 4.222 22 C -0.098 4.098 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.143 4.143 27 C -0.153 4.153 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.033 0.967 31 H 0.241 0.759 32 H 0.249 0.751 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 9.069 -13.858 9.891 19.291 hybrid contribution -1.132 1.810 0.421 2.176 sum 7.937 -12.048 10.312 17.734 Atomic orbital electron populations 1.70075 1.07396 1.27606 1.51471 1.25739 0.95523 1.02498 0.94873 0.85556 0.78834 0.79774 0.77782 1.19548 1.20945 1.20004 1.21404 0.92911 0.91556 1.50457 0.92975 1.19141 0.93265 0.91086 0.96477 1.19557 0.91651 0.91778 0.85649 0.92746 1.44907 1.16286 1.61006 1.14072 1.16111 0.80938 0.78873 0.83804 1.90864 1.71474 1.53263 1.35982 1.44990 1.17887 1.63765 1.11623 1.21736 0.79917 0.94262 0.98180 0.90297 1.22075 0.95513 1.05389 0.93740 1.23974 0.94894 1.05639 0.95308 1.88095 1.20217 1.73635 1.29242 1.24765 0.92237 1.01753 1.03441 1.20482 0.98281 0.96380 0.94674 1.21052 0.97994 0.96615 0.98038 1.21438 0.98889 0.95070 0.98872 1.21461 0.99985 1.00917 0.92451 1.21374 0.97610 0.95174 1.00116 1.21173 1.00437 0.96611 0.97049 0.92751 0.97799 0.96737 0.75900 0.75088 0.87900 0.87952 0.86914 0.86306 0.88345 0.89775 0.85991 0.83579 0.83210 0.84033 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.37 13.29 21.45 0.28 -53.09 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -28.14 8.84 25.60 0.23 -27.92 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.04 1.87 4.50 29.85 0.13 2.00 16 10 C 0.22 9.26 2.12 44.25 0.09 9.35 16 11 H 0.05 2.61 7.44 -2.38 -0.02 2.59 16 12 N -0.71 -25.24 4.02 -461.40 -1.86 -27.10 16 13 C 0.70 24.50 8.50 179.05 1.52 26.03 16 14 O -0.63 -27.65 15.66 -4.00 -0.06 -27.71 16 15 N -0.73 -17.52 5.10 -454.36 -2.32 -19.83 16 16 C 0.17 3.69 2.83 45.72 0.13 3.82 16 17 H 0.08 2.18 7.57 -2.39 -0.02 2.16 16 18 C -0.13 -1.64 6.02 30.81 0.19 -1.45 16 19 C -0.05 -0.63 7.38 72.22 0.53 -0.10 16 20 S -0.34 -7.52 23.23 -56.49 -1.31 -8.83 16 21 C -0.07 -1.78 7.13 72.72 0.52 -1.26 16 22 C -0.10 -3.67 4.91 -19.87 -0.10 -3.77 16 23 C -0.12 -3.86 9.33 22.27 0.21 -3.65 16 24 C -0.12 -3.35 10.05 22.27 0.22 -3.13 16 25 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 26 C -0.12 -3.61 10.05 22.27 0.22 -3.38 16 27 C -0.13 -4.82 9.67 22.27 0.22 -4.60 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.41 12.75 8.62 -92.71 -0.80 11.95 16 32 H 0.41 7.23 8.31 -92.71 -0.77 6.45 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 0.91 7.67 -2.39 -0.02 0.89 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.12 3.65 7.71 -2.91 -0.02 3.63 16 40 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 41 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 43 H 0.11 4.00 8.04 -2.91 -0.02 3.98 16 Total: -1.00 -71.28 371.56 1.01 -70.26 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.55 Total: 31.17 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 4.80 Total: -10.00 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.89 Total: -100.02 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.06 Total: -27.71 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.31 Total: -8.83 kcal Total: -71.28 1.01 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349572281.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.596 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds