Wall clock time and date at job start Tue Mar 31 2020 13:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35861 * 119.78225 * 2 1 4 4 C 1.36780 * 119.12139 * 179.97438 * 3 2 1 5 5 C 1.48253 * 120.63057 * 180.02562 * 4 3 2 6 6 N 1.30841 * 126.42425 * 0.03029 * 5 4 3 7 7 O 1.21288 * 110.08274 * 180.02562 * 6 5 4 8 8 C 1.33667 * 110.04480 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.43106 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47342 * 269.97941 * 9 8 7 11 11 C 1.52999 * 109.47228 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46789 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00008 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99987 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47148 * 60.00451 * 17 15 13 19 19 H 1.48499 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47451 * 300.00135 * 17 15 13 21 21 N 1.30975 * 107.13983 * 359.73659 * 8 7 6 22 22 C 1.41749 * 118.73976 * 0.02562 * 4 3 2 23 23 O 1.35091 * 120.24520 * 179.97438 * 22 4 3 24 24 N 1.32273 * 119.50313 * 0.02562 * 22 4 3 25 25 C 1.33302 * 120.85409 * 359.72132 * 24 22 4 26 26 O 1.21951 * 119.32789 * 180.30379 * 25 24 22 27 27 H 1.09002 * 109.47391 * 89.99487 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99544 * 1 2 3 29 29 H 1.09004 * 109.47041 * 209.99671 * 1 2 3 30 30 H 1.08003 * 120.43545 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47478 * 29.98034 * 9 8 7 32 32 H 1.09003 * 109.47379 * 149.97646 * 9 8 7 33 33 H 1.08997 * 109.46922 * 299.99752 * 10 9 8 34 34 H 1.08997 * 109.46803 * 59.99798 * 10 9 8 35 35 H 1.09002 * 109.47056 * 300.00223 * 11 10 9 36 36 H 1.09003 * 109.47429 * 59.99744 * 11 10 9 37 37 H 1.08997 * 109.47099 * 299.99684 * 12 11 10 38 38 H 1.08995 * 109.47276 * 60.00327 * 12 11 10 39 39 H 0.97007 * 119.99779 * 179.97438 * 16 15 13 40 40 H 0.96702 * 113.99605 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1398 1.1792 0.0000 4 6 3.5075 1.1634 0.0005 5 6 4.2775 2.4303 0.0011 6 7 3.7814 3.6410 0.0018 7 8 4.6775 4.4583 0.0016 8 6 5.8622 3.8393 0.0014 9 6 7.2168 4.4994 0.0017 10 6 7.6757 4.7230 -1.4407 11 6 9.0507 5.3938 -1.4404 12 6 9.5097 5.6167 -2.8828 13 6 10.8645 6.2769 -2.8824 14 1 11.3494 6.5141 -1.9470 15 6 11.4849 6.5780 -4.0763 16 7 10.8947 6.2887 -5.2153 17 14 13.1638 7.3970 -4.0759 18 1 14.1398 6.5249 -3.3745 19 1 13.6099 7.6121 -5.4758 20 1 13.0767 8.7043 -3.3771 21 7 5.6247 2.5512 0.0072 22 6 4.1747 -0.0873 0.0005 23 8 5.5247 -0.1383 0.0005 24 7 3.4656 -1.2039 -0.0005 25 6 2.1331 -1.1675 0.0040 26 8 1.5070 -2.2140 0.0085 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8901 0.5138 30 1 1.6034 2.1165 -0.0004 31 1 7.1536 5.4586 0.5156 32 1 7.9333 3.8585 0.5157 33 1 7.7391 3.7638 -1.9546 34 1 6.9593 5.3638 -1.9546 35 1 8.9869 6.3530 -0.9266 36 1 9.7674 4.7533 -0.9263 37 1 9.5737 4.6573 -3.3961 38 1 8.7933 6.2571 -3.3972 39 1 11.3310 6.5009 -6.0553 40 1 5.8842 -1.0360 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350230708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:04 Heat of formation + Delta-G solvation = 25.858079 kcal Electronic energy + Delta-G solvation = -25369.654289 eV Core-core repulsion = 21381.745032 eV Total energy + Delta-G solvation = -3987.909257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.63001 -42.27293 -39.17294 -37.38474 -36.28406 -35.68182 -35.03427 -33.62998 -32.42163 -31.19721 -29.37720 -28.17261 -25.97229 -25.50891 -24.78780 -23.33194 -22.62693 -21.36032 -20.20907 -20.11664 -18.74823 -18.18170 -18.02795 -17.08882 -17.03529 -16.23103 -16.06651 -15.40267 -15.19919 -14.98565 -14.86020 -14.51558 -14.26842 -13.93633 -13.82265 -13.22097 -13.07135 -12.98719 -12.71181 -12.30792 -12.09299 -11.74771 -11.63588 -11.37387 -11.12820 -11.04101 -10.68167 -10.66571 -10.61930 -10.53247 -10.40595 -10.23328 -9.73159 -9.34666 -9.09117 -8.90311 -8.35725 -6.00825 -4.03484 -0.01095 0.64601 1.24229 1.75367 2.30998 2.67486 2.71753 3.14210 3.26004 3.32631 3.37438 3.39404 3.57330 3.67574 3.99199 4.30569 4.44888 4.57870 4.64621 4.69790 4.91463 5.00173 5.14050 5.18746 5.29756 5.35091 5.41236 5.69336 5.72535 5.82380 5.97637 6.03816 6.32076 6.65345 6.71460 6.80504 7.08054 7.23155 7.62280 7.65956 7.79849 7.98259 7.98981 8.40757 9.03734 9.60726 11.10408 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026188 B = 0.002023 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.931539 B =13838.474788 C =14248.278422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.524 5.524 3 C 0.241 3.759 4 C -0.175 4.175 5 C 0.231 3.769 6 N -0.392 5.392 7 O 0.079 5.921 8 C 0.206 3.794 9 C -0.032 4.032 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 N -0.459 5.459 22 C 0.489 3.511 23 O -0.410 6.410 24 N -0.610 5.610 25 C 0.654 3.346 26 O -0.526 6.526 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.192 0.808 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.016 0.984 39 H 0.261 0.739 40 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 -8.708 13.595 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.239 5.239 3 C 0.100 3.900 4 C -0.186 4.186 5 C -0.040 4.040 6 N -0.102 5.102 7 O 0.020 5.980 8 C -0.014 4.014 9 C -0.071 4.071 10 C -0.154 4.154 11 C -0.146 4.146 12 C -0.017 4.017 13 C -0.560 4.560 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 N -0.192 5.192 22 C 0.286 3.714 23 O -0.202 6.202 24 N -0.368 5.368 25 C 0.356 3.644 26 O -0.400 6.400 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.209 0.791 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -21.196 -9.959 13.414 26.989 hybrid contribution 0.898 0.782 -0.204 1.208 sum -20.298 -9.177 13.210 25.898 Atomic orbital electron populations 1.22307 0.75286 1.05753 1.04793 1.46412 1.10941 1.06703 1.59834 1.22364 0.91326 0.91494 0.84809 1.16471 0.90488 0.88421 1.23250 1.22881 0.87899 0.91499 1.01753 1.74818 1.12857 0.99657 1.22828 1.85254 1.12930 1.34008 1.65824 1.29200 0.91898 0.86861 0.93460 1.20585 0.83720 1.00920 1.01838 1.21742 0.99638 1.02139 0.91904 1.21634 0.92605 0.98771 1.01612 1.19097 0.95913 0.96986 0.89712 1.21221 1.03161 1.39397 0.92228 0.92675 1.25035 0.97830 0.95952 0.95718 1.69954 1.38455 1.47809 0.97275 0.86659 0.84435 0.79980 0.76926 1.20240 1.21347 1.20246 1.72185 1.11436 1.15226 1.20311 1.20192 0.85269 0.87947 0.78013 1.85284 1.13593 1.36727 1.84565 1.69800 1.05831 1.26600 1.34551 1.17463 0.84679 0.83055 0.79239 1.91016 1.66105 1.29652 1.53180 0.89738 0.88998 0.87959 0.79118 0.87946 0.87077 0.91388 0.91646 0.92897 0.92881 0.96569 0.96591 0.92949 0.72684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 10.37 59.85 0.62 0.87 16 2 N -0.52 -4.14 2.98 -129.05 -0.39 -4.53 16 3 C 0.24 1.68 10.05 -16.30 -0.16 1.52 16 4 C -0.17 -1.75 5.87 -104.97 -0.62 -2.37 16 5 C 0.23 2.76 7.79 -156.09 -1.22 1.54 16 6 N -0.39 -4.63 11.88 30.98 0.37 -4.26 16 7 O 0.08 0.95 11.29 18.04 0.20 1.15 16 8 C 0.21 2.48 7.75 -12.98 -0.10 2.38 16 9 C -0.03 -0.34 5.84 -27.88 -0.16 -0.51 16 10 C -0.12 -1.67 5.20 -26.73 -0.14 -1.81 16 11 C -0.11 -1.96 5.15 -26.73 -0.14 -2.10 16 12 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 13 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 N -0.46 -6.03 10.20 -9.88 -0.10 -6.13 16 22 C 0.49 5.20 7.92 -16.02 -0.13 5.07 16 23 O -0.41 -3.93 12.01 -16.98 -0.20 -4.13 16 24 N -0.61 -7.41 10.39 -16.51 -0.17 -7.59 16 25 C 0.65 8.00 8.33 -88.46 -0.74 7.27 16 26 O -0.53 -8.03 16.69 4.96 0.08 -7.95 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.08 8.03 -51.93 -0.42 -0.34 16 29 H 0.10 0.53 7.36 -51.93 -0.38 0.14 16 30 H 0.19 0.72 7.88 -52.48 -0.41 0.31 16 31 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.42 2.21 8.98 45.56 0.41 2.62 16 LS Contribution 354.97 15.07 5.35 5.35 Total: -1.00 -36.65 354.97 -6.62 -43.27 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.15 Total: -4.64 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -3.33 Total: -0.93 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: 0.45 Total: -48.35 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.08 Total: -10.93 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.65 -6.62 -43.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350230708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.129 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds