Wall clock time and date at job start Tue Mar 31 2020 13:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35861 * 119.78225 * 2 1 4 4 C 1.36780 * 119.12139 * 179.97438 * 3 2 1 5 5 C 1.48253 * 120.63057 * 180.02562 * 4 3 2 6 6 N 1.30841 * 126.42425 * 0.03029 * 5 4 3 7 7 O 1.21288 * 110.08274 * 180.02562 * 6 5 4 8 8 C 1.33667 * 110.04480 * 359.97438 * 7 6 5 9 9 C 1.50695 * 126.43106 * 180.02562 * 8 7 6 10 10 C 1.53006 * 109.47342 * 269.97941 * 9 8 7 11 11 C 1.52999 * 109.47228 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.46926 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46789 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00008 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99676 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99987 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47148 * 60.00451 * 17 15 13 19 19 H 1.48499 * 109.47105 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47451 * 300.00135 * 17 15 13 21 21 N 1.30975 * 107.13983 * 359.73659 * 8 7 6 22 22 C 1.41749 * 118.73976 * 0.02562 * 4 3 2 23 23 O 1.35091 * 120.24520 * 179.97438 * 22 4 3 24 24 N 1.32273 * 119.50313 * 0.02562 * 22 4 3 25 25 C 1.33302 * 120.85409 * 359.72132 * 24 22 4 26 26 O 1.21951 * 119.32789 * 180.30379 * 25 24 22 27 27 H 1.09002 * 109.47391 * 89.99487 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99544 * 1 2 3 29 29 H 1.09004 * 109.47041 * 209.99671 * 1 2 3 30 30 H 1.08003 * 120.43545 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47478 * 29.98034 * 9 8 7 32 32 H 1.09003 * 109.47379 * 149.97646 * 9 8 7 33 33 H 1.08997 * 109.46922 * 299.99752 * 10 9 8 34 34 H 1.08997 * 109.46803 * 59.99798 * 10 9 8 35 35 H 1.09002 * 109.47056 * 300.00223 * 11 10 9 36 36 H 1.09003 * 109.47429 * 59.99744 * 11 10 9 37 37 H 1.08997 * 109.47099 * 299.99684 * 12 11 10 38 38 H 1.08995 * 109.47276 * 60.00327 * 12 11 10 39 39 H 0.97007 * 119.99779 * 179.97438 * 16 15 13 40 40 H 0.96702 * 113.99605 * 180.02562 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1398 1.1792 0.0000 4 6 3.5075 1.1634 0.0005 5 6 4.2775 2.4303 0.0011 6 7 3.7814 3.6410 0.0018 7 8 4.6775 4.4583 0.0016 8 6 5.8622 3.8393 0.0014 9 6 7.2168 4.4994 0.0017 10 6 7.6757 4.7230 -1.4407 11 6 9.0507 5.3938 -1.4404 12 6 9.5097 5.6167 -2.8828 13 6 10.8645 6.2769 -2.8824 14 1 11.3494 6.5141 -1.9470 15 6 11.4849 6.5780 -4.0763 16 7 10.8947 6.2887 -5.2153 17 14 13.1638 7.3970 -4.0759 18 1 14.1398 6.5249 -3.3745 19 1 13.6099 7.6121 -5.4758 20 1 13.0767 8.7043 -3.3771 21 7 5.6247 2.5512 0.0072 22 6 4.1747 -0.0873 0.0005 23 8 5.5247 -0.1383 0.0005 24 7 3.4656 -1.2039 -0.0005 25 6 2.1331 -1.1675 0.0040 26 8 1.5070 -2.2140 0.0085 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8901 0.5138 30 1 1.6034 2.1165 -0.0004 31 1 7.1536 5.4586 0.5156 32 1 7.9333 3.8585 0.5157 33 1 7.7391 3.7638 -1.9546 34 1 6.9593 5.3638 -1.9546 35 1 8.9869 6.3530 -0.9266 36 1 9.7674 4.7533 -0.9263 37 1 9.5737 4.6573 -3.3961 38 1 8.7933 6.2571 -3.3972 39 1 11.3310 6.5009 -6.0553 40 1 5.8842 -1.0360 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350230708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:04 Heat of formation + Delta-G solvation = -4.253344 kcal Electronic energy + Delta-G solvation = -25370.960018 eV Core-core repulsion = 21381.745032 eV Total energy + Delta-G solvation = -3989.214986 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.51921 -43.03677 -39.94646 -38.23078 -37.37862 -36.74186 -35.81133 -35.16708 -33.84997 -32.20922 -30.77187 -28.68540 -27.47256 -26.34332 -25.68044 -24.51190 -23.78549 -22.36965 -21.73279 -20.89736 -19.48804 -19.08614 -18.83348 -18.33574 -17.84071 -17.80792 -16.93552 -16.53024 -16.31477 -16.11460 -15.71042 -15.64707 -15.13312 -14.76944 -14.59780 -14.53978 -14.22513 -13.65703 -13.62834 -13.52182 -13.41500 -13.39612 -12.76655 -12.49793 -12.35445 -12.29070 -12.17453 -12.08713 -12.01041 -11.48217 -11.30491 -11.29774 -11.23296 -11.19759 -10.87423 -10.49267 -9.70489 -8.15030 -6.25484 -0.66704 -0.21280 0.35334 1.11158 1.41645 1.44106 1.46723 1.54325 1.81549 1.99136 2.33629 2.44049 2.45337 2.79358 2.95391 3.18568 3.39898 3.72842 3.96262 4.06373 4.11675 4.11889 4.21734 4.36751 4.40702 4.70522 4.72091 4.75115 4.80719 4.88146 4.95931 4.96825 5.05172 5.24085 5.37949 5.39639 5.62203 5.86246 5.94944 6.08062 6.31270 6.42406 6.80810 6.93625 7.08257 7.43909 8.96511 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.026188 B = 0.002023 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.931539 B =13838.474788 C =14248.278422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.515 5.515 3 C 0.274 3.726 4 C -0.203 4.203 5 C 0.231 3.769 6 N -0.392 5.392 7 O 0.075 5.925 8 C 0.207 3.793 9 C -0.021 4.021 10 C -0.105 4.105 11 C -0.096 4.096 12 C 0.018 3.982 13 C -0.539 4.539 14 H 0.066 0.934 15 C -0.006 4.006 16 N -0.937 5.937 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.288 1.288 20 H -0.265 1.265 21 N -0.482 5.482 22 C 0.491 3.509 23 O -0.418 6.418 24 N -0.638 5.638 25 C 0.647 3.353 26 O -0.569 6.569 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.089 0.911 30 H 0.232 0.768 31 H 0.132 0.868 32 H 0.124 0.876 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.060 0.940 37 H -0.014 1.014 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.750 -7.190 15.174 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.227 5.227 3 C 0.132 3.868 4 C -0.214 4.214 5 C -0.040 4.040 6 N -0.103 5.103 7 O 0.017 5.983 8 C -0.013 4.013 9 C -0.059 4.059 10 C -0.144 4.144 11 C -0.134 4.134 12 C -0.019 4.019 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.203 4.203 16 N -0.577 5.577 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.189 1.189 21 N -0.215 5.215 22 C 0.289 3.711 23 O -0.212 6.212 24 N -0.398 5.398 25 C 0.349 3.651 26 O -0.447 6.447 27 H 0.116 0.884 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.150 0.850 32 H 0.142 0.858 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.004 0.996 38 H 0.009 0.991 39 H 0.070 0.930 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -21.655 -8.414 15.013 27.661 hybrid contribution 0.986 0.304 -0.721 1.259 sum -20.669 -8.111 14.292 26.406 Atomic orbital electron populations 1.22680 0.72648 1.07270 1.06201 1.46418 1.12487 1.05857 1.57982 1.22871 0.90463 0.92141 0.81296 1.16586 0.91675 0.87467 1.25675 1.23090 0.87687 0.92053 1.01149 1.74785 1.12756 0.99444 1.23297 1.85237 1.12967 1.34083 1.65970 1.29288 0.92167 0.86695 0.93127 1.20501 0.83352 1.02774 0.99281 1.21501 0.97601 1.00766 0.94558 1.21419 0.94650 1.00186 0.97102 1.19061 0.94743 0.94547 0.93543 1.21758 1.04312 1.39011 0.92666 0.91628 1.26012 1.02116 0.96741 0.95408 1.70103 1.40383 1.49294 0.97954 0.85526 0.79394 0.79322 0.76965 1.19170 1.21382 1.18948 1.72184 1.12373 1.15911 1.21032 1.20264 0.85408 0.87941 0.77453 1.85262 1.13390 1.38195 1.84314 1.69677 1.06417 1.27743 1.35952 1.17550 0.84783 0.83701 0.79108 1.90978 1.66871 1.31371 1.55430 0.88397 0.84733 0.89236 0.75163 0.85013 0.85771 0.92985 0.91971 0.91395 0.92084 0.99582 0.99132 0.92991 0.71048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 10.37 127.77 1.32 1.62 16 2 N -0.51 -7.23 2.98 -680.46 -2.03 -9.26 16 3 C 0.27 3.11 10.05 83.73 0.84 3.95 16 4 C -0.20 -3.78 5.87 -20.09 -0.12 -3.89 16 5 C 0.23 5.17 7.79 137.21 1.07 6.24 16 6 N -0.39 -8.42 11.88 -59.02 -0.70 -9.12 16 7 O 0.07 1.65 11.29 74.63 0.84 2.49 16 8 C 0.21 4.61 7.75 88.35 0.68 5.30 16 9 C -0.02 -0.39 5.84 29.85 0.17 -0.22 16 10 C -0.11 -2.94 5.20 30.60 0.16 -2.78 16 11 C -0.10 -3.37 5.15 30.59 0.16 -3.21 16 12 C 0.02 0.91 4.97 29.85 0.15 1.06 16 13 C -0.54 -29.61 9.11 25.60 0.23 -29.37 16 14 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 15 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 16 N -0.94 -56.74 13.29 21.45 0.28 -56.46 16 17 Si 0.96 43.38 29.54 68.60 2.03 45.41 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 21 N -0.48 -12.08 10.20 -302.42 -3.08 -15.16 16 22 C 0.49 10.33 7.92 85.49 0.68 11.01 16 23 O -0.42 -8.02 12.01 -83.66 -1.01 -9.03 16 24 N -0.64 -15.75 10.39 -438.26 -4.55 -20.30 16 25 C 0.65 15.81 8.33 179.59 1.50 17.31 16 26 O -0.57 -17.86 16.69 -5.16 -0.09 -17.95 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.13 -0.36 8.03 -2.39 -0.02 -0.38 16 29 H 0.09 0.82 7.36 -2.38 -0.02 0.81 16 30 H 0.23 0.72 7.88 -2.91 -0.02 0.70 16 31 H 0.13 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 38 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 40 H 0.43 4.76 8.98 -74.06 -0.66 4.10 16 Total: -1.00 -82.10 354.97 -0.57 -82.67 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 0.43 Total: -0.45 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 7.31 Total: 7.15 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -10.08 Total: -110.30 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.25 Total: -24.48 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -82.10 -0.57 -82.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350230708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.412 kcal (2) G-P(sol) polarization free energy of solvation -82.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds