Wall clock time and date at job start Tue Mar 31 2020 12:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21273 * 119.99838 * 2 1 4 4 C 1.46989 * 120.00141 * 179.97438 * 2 1 3 5 5 C 1.39903 * 120.16261 * 0.31242 * 4 2 1 6 6 C 1.38383 * 119.77466 * 180.27423 * 5 4 2 7 7 N 1.40094 * 119.94355 * 179.70641 * 6 5 4 8 8 C 1.34769 * 120.00160 * 324.31836 * 7 6 5 9 9 O 1.21590 * 120.00452 * 4.75946 * 8 7 6 10 10 N 1.34784 * 119.99967 * 184.76606 * 8 7 6 11 11 C 1.46499 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46872 * 184.75694 * 11 10 8 13 13 C 1.50692 * 115.55191 * 304.01919 * 12 11 10 14 14 H 1.07998 * 120.00061 * 95.19779 * 13 12 11 15 15 C 1.37887 * 119.99960 * 274.92242 * 13 12 11 16 16 N 1.31513 * 119.99981 * 355.51097 * 15 13 12 17 17 Si 1.86804 * 119.99828 * 175.51135 * 15 13 12 18 18 H 1.48507 * 109.46973 * 89.99945 * 17 15 13 19 19 H 1.48501 * 109.46855 * 209.99738 * 17 15 13 20 20 H 1.48497 * 109.47279 * 330.00131 * 17 15 13 21 21 C 1.53007 * 117.49779 * 89.69094 * 12 11 10 22 22 C 1.53006 * 117.49834 * 158.34950 * 12 11 10 23 23 C 1.39089 * 120.10822 * 359.43293 * 6 5 4 24 24 C 1.38130 * 120.33351 * 0.25680 * 23 6 5 25 25 C 1.38291 * 120.22337 * 0.04412 * 24 23 6 26 26 F 1.35100 * 120.05830 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46971 * 240.00205 * 1 2 3 28 28 H 1.09002 * 109.47504 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47114 * 119.99861 * 1 2 3 30 30 H 1.08006 * 120.11367 * 359.97438 * 5 4 2 31 31 H 0.97004 * 119.99851 * 144.31063 * 7 6 5 32 32 H 0.96999 * 119.99927 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.46933 * 64.75462 * 11 10 8 34 34 H 1.08997 * 109.47123 * 304.75696 * 11 10 8 35 35 H 0.96993 * 119.99881 * 185.00317 * 16 15 13 36 36 H 1.08997 * 117.49624 * 215.00077 * 21 12 11 37 37 H 1.08997 * 117.49712 * 0.02562 * 21 12 11 38 38 H 1.09006 * 117.49553 * 359.97438 * 22 12 11 39 39 H 1.08993 * 117.49730 * 144.97556 * 22 12 11 40 40 H 1.08005 * 119.83079 * 180.27164 * 23 6 5 41 41 H 1.08001 * 119.89255 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2729 0.0006 5 6 1.5460 -2.4865 -0.0055 6 6 2.2460 -3.6802 0.0009 7 7 1.5525 -4.8975 0.0010 8 6 0.3922 -5.0120 0.6769 9 8 -0.0971 -4.0372 1.2144 10 7 -0.2258 -6.2071 0.7573 11 6 -1.4868 -6.3316 1.4926 12 6 -1.9117 -7.8009 1.5310 13 6 -2.0459 -8.4740 0.1895 14 1 -1.2222 -9.0449 -0.2131 15 6 -3.2223 -8.3658 -0.5215 16 7 -4.2568 -7.7506 0.0085 17 14 -3.3467 -9.0932 -2.2377 18 1 -3.8208 -10.4976 -2.1469 19 1 -4.3071 -8.2977 -3.0440 20 1 -2.0113 -9.0625 -2.8863 21 6 -1.4112 -8.6507 2.7009 22 6 -2.8809 -8.2274 2.6355 23 6 3.6368 -3.6735 0.0013 24 6 4.3286 -2.4779 0.0008 25 6 3.6430 -1.2769 0.0007 26 9 4.3229 -0.1095 0.0007 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4659 -2.4918 -0.0102 31 1 1.9075 -5.6580 -0.4854 32 1 0.1644 -6.9847 0.3284 33 1 -2.2575 -5.7434 0.9943 34 1 -1.3516 -5.9657 2.5103 35 1 -5.1057 -7.7373 -0.4605 36 1 -1.1791 -9.6965 2.5001 37 1 -0.7797 -8.1628 3.4433 38 1 -3.2154 -7.4612 3.3349 39 1 -3.6157 -8.9945 2.3916 40 1 4.1787 -4.6078 0.0018 41 1 5.4086 -2.4809 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352108959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:54 Heat of formation + Delta-G solvation = -59.023884 kcal Electronic energy + Delta-G solvation = -26134.376394 eV Core-core repulsion = 22122.866417 eV Total energy + Delta-G solvation = -4011.509977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.94437 -40.61279 -39.46327 -38.19127 -36.82226 -34.50328 -33.53731 -32.28200 -32.07221 -29.47240 -29.30915 -26.30226 -25.25873 -24.37571 -22.73002 -21.26316 -20.63800 -20.18109 -19.54085 -18.15889 -17.76148 -17.43256 -16.52469 -16.15546 -15.84283 -15.55217 -15.17355 -14.78261 -14.74676 -14.63383 -14.55669 -14.27603 -14.05541 -13.49873 -13.15752 -13.10368 -12.84122 -12.59086 -12.30247 -12.21626 -12.00238 -11.77273 -11.69947 -11.09712 -11.05058 -10.62746 -10.35343 -10.28333 -9.96648 -9.82023 -9.58378 -9.32762 -9.15441 -8.64554 -8.50479 -8.27624 -8.00926 -6.17975 -4.28876 0.35359 0.99526 2.18609 2.77720 3.17285 3.25860 3.26036 3.26463 3.60473 3.81722 4.08820 4.24715 4.41074 4.52720 4.76039 4.97153 5.02736 5.09951 5.22866 5.26310 5.29804 5.38218 5.62578 5.77251 5.86623 5.90794 5.93475 6.07467 6.22976 6.26658 6.37244 6.43705 6.61696 6.69901 6.77165 7.01698 7.04983 7.17418 7.28575 7.37392 7.46715 7.70109 8.22415 8.31584 8.72755 8.82445 9.39194 10.88889 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.002886 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.456890 B = 9700.804391 C = 9869.097881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.397 3.603 3 O -0.452 6.452 4 C -0.191 4.191 5 C -0.047 4.047 6 C 0.155 3.845 7 N -0.692 5.692 8 C 0.696 3.304 9 O -0.588 6.588 10 N -0.708 5.708 11 C 0.180 3.820 12 C 0.023 3.977 13 C -0.504 4.504 14 H 0.060 0.940 15 C 0.075 3.925 16 N -0.872 5.872 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.211 4.211 22 C -0.141 4.141 23 C -0.091 4.091 24 C -0.149 4.149 25 C 0.129 3.871 26 F -0.123 7.123 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.163 0.837 31 H 0.409 0.591 32 H 0.402 0.598 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.808 6.482 -1.129 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.275 3.725 3 O -0.328 6.328 4 C -0.194 4.194 5 C -0.068 4.068 6 C 0.059 3.941 7 N -0.340 5.340 8 C 0.396 3.604 9 O -0.467 6.467 10 N -0.359 5.359 11 C 0.056 3.944 12 C 0.022 3.978 13 C -0.541 4.541 14 H 0.078 0.922 15 C -0.129 4.129 16 N -0.507 5.507 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.248 4.248 22 C -0.179 4.179 23 C -0.112 4.112 24 C -0.168 4.168 25 C 0.109 3.891 26 F -0.101 7.101 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.181 0.819 31 H 0.245 0.755 32 H 0.236 0.764 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.158 0.842 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.400 7.983 -0.657 14.762 hybrid contribution 0.213 -1.257 -1.325 1.839 sum 12.614 6.726 -1.982 14.432 Atomic orbital electron populations 1.22242 0.92852 1.05103 1.05375 1.22365 0.92063 0.86906 0.71158 1.90578 1.72188 1.33931 1.36079 1.20552 0.92313 0.96313 1.10210 1.21661 1.02215 0.88856 0.94084 1.17410 0.90378 0.85646 1.00653 1.42705 1.24273 1.12596 1.54454 1.16036 0.79972 0.84828 0.79530 1.90864 1.66325 1.37166 1.52338 1.45197 1.25786 1.08284 1.56654 1.20909 0.82328 0.98086 0.93036 1.19032 0.99015 0.89523 0.90199 1.20310 1.00075 1.32820 1.00924 0.92213 1.24988 0.95862 0.94364 0.97710 1.69977 1.01123 1.41225 1.38413 0.86636 0.78057 0.79017 0.84538 1.20662 1.21158 1.19829 1.23055 0.98102 1.00248 1.03435 1.22467 0.91295 1.02523 1.01662 1.20986 0.92145 0.98525 0.99593 1.20860 1.00936 0.90262 1.04742 1.17874 0.88986 0.81819 1.00460 1.91557 1.79416 1.46000 1.93106 0.88071 0.89653 0.88634 0.81921 0.75510 0.76363 0.91456 0.94033 0.92771 0.90401 0.91691 0.91746 0.89476 0.84173 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.07 8.93 36.01 0.32 -1.75 16 2 C 0.40 5.29 7.22 -30.76 -0.22 5.07 16 3 O -0.45 -7.31 16.07 5.56 0.09 -7.22 16 4 C -0.19 -2.50 5.87 -105.03 -0.62 -3.11 16 5 C -0.05 -0.62 8.11 -38.91 -0.32 -0.93 16 6 C 0.16 1.84 6.29 -83.71 -0.53 1.32 16 7 N -0.69 -8.32 5.35 -14.25 -0.08 -8.39 16 8 C 0.70 11.35 8.40 -86.92 -0.73 10.61 16 9 O -0.59 -11.30 13.80 5.29 0.07 -11.22 16 10 N -0.71 -12.11 5.42 -65.23 -0.35 -12.46 16 11 C 0.18 3.69 5.56 -4.04 -0.02 3.66 16 12 C 0.02 0.50 1.60 -155.66 -0.25 0.25 16 13 C -0.50 -11.96 8.15 -34.44 -0.28 -12.24 16 14 H 0.06 1.38 7.82 -52.49 -0.41 0.97 16 15 C 0.08 1.87 5.43 -17.82 -0.10 1.78 16 16 N -0.87 -22.82 12.65 55.43 0.70 -22.12 16 17 Si 0.89 19.33 29.54 -169.99 -5.02 14.30 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.21 -4.12 9.93 -26.69 -0.27 -4.39 16 22 C -0.14 -3.05 9.17 -26.69 -0.24 -3.29 16 23 C -0.09 -0.85 9.95 -39.31 -0.39 -1.24 16 24 C -0.15 -1.45 10.00 -39.60 -0.40 -1.84 16 25 C 0.13 1.63 7.29 -38.86 -0.28 1.35 16 26 F -0.12 -1.74 15.54 2.25 0.04 -1.70 16 27 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 28 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 29 H 0.10 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.16 2.29 5.24 -52.48 -0.28 2.01 16 31 H 0.41 3.62 8.84 -40.82 -0.36 3.26 16 32 H 0.40 6.25 8.02 -40.82 -0.33 5.92 16 33 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 34 H 0.04 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.26 6.64 8.32 -40.82 -0.34 6.31 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 40 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -29.69 359.05 -8.61 -38.30 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.15 Total: 9.85 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -4.32 Total: -4.75 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.27 Total: -42.97 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.16 Total: -18.44 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.69 -8.61 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352108959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.720 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds