Wall clock time and date at job start Tue Mar 31 2020 12:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21273 * 119.99838 * 2 1 4 4 C 1.46989 * 120.00141 * 179.97438 * 2 1 3 5 5 C 1.39903 * 120.16261 * 0.31242 * 4 2 1 6 6 C 1.38383 * 119.77466 * 180.27423 * 5 4 2 7 7 N 1.40094 * 119.94355 * 179.70641 * 6 5 4 8 8 C 1.34769 * 120.00160 * 324.31836 * 7 6 5 9 9 O 1.21590 * 120.00452 * 4.75946 * 8 7 6 10 10 N 1.34784 * 119.99967 * 184.76606 * 8 7 6 11 11 C 1.46499 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46872 * 184.75694 * 11 10 8 13 13 C 1.50692 * 115.55191 * 304.01919 * 12 11 10 14 14 H 1.07998 * 120.00061 * 95.19779 * 13 12 11 15 15 C 1.37887 * 119.99960 * 274.92242 * 13 12 11 16 16 N 1.31513 * 119.99981 * 355.51097 * 15 13 12 17 17 Si 1.86804 * 119.99828 * 175.51135 * 15 13 12 18 18 H 1.48507 * 109.46973 * 89.99945 * 17 15 13 19 19 H 1.48501 * 109.46855 * 209.99738 * 17 15 13 20 20 H 1.48497 * 109.47279 * 330.00131 * 17 15 13 21 21 C 1.53007 * 117.49779 * 89.69094 * 12 11 10 22 22 C 1.53006 * 117.49834 * 158.34950 * 12 11 10 23 23 C 1.39089 * 120.10822 * 359.43293 * 6 5 4 24 24 C 1.38130 * 120.33351 * 0.25680 * 23 6 5 25 25 C 1.38291 * 120.22337 * 0.04412 * 24 23 6 26 26 F 1.35100 * 120.05830 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.46971 * 240.00205 * 1 2 3 28 28 H 1.09002 * 109.47504 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47114 * 119.99861 * 1 2 3 30 30 H 1.08006 * 120.11367 * 359.97438 * 5 4 2 31 31 H 0.97004 * 119.99851 * 144.31063 * 7 6 5 32 32 H 0.96999 * 119.99927 * 359.97438 * 10 8 7 33 33 H 1.09002 * 109.46933 * 64.75462 * 11 10 8 34 34 H 1.08997 * 109.47123 * 304.75696 * 11 10 8 35 35 H 0.96993 * 119.99881 * 185.00317 * 16 15 13 36 36 H 1.08997 * 117.49624 * 215.00077 * 21 12 11 37 37 H 1.08997 * 117.49712 * 0.02562 * 21 12 11 38 38 H 1.09006 * 117.49553 * 359.97438 * 22 12 11 39 39 H 1.08993 * 117.49730 * 144.97556 * 22 12 11 40 40 H 1.08005 * 119.83079 * 180.27164 * 23 6 5 41 41 H 1.08001 * 119.89255 * 180.02562 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2729 0.0006 5 6 1.5460 -2.4865 -0.0055 6 6 2.2460 -3.6802 0.0009 7 7 1.5525 -4.8975 0.0010 8 6 0.3922 -5.0120 0.6769 9 8 -0.0971 -4.0372 1.2144 10 7 -0.2258 -6.2071 0.7573 11 6 -1.4868 -6.3316 1.4926 12 6 -1.9117 -7.8009 1.5310 13 6 -2.0459 -8.4740 0.1895 14 1 -1.2222 -9.0449 -0.2131 15 6 -3.2223 -8.3658 -0.5215 16 7 -4.2568 -7.7506 0.0085 17 14 -3.3467 -9.0932 -2.2377 18 1 -3.8208 -10.4976 -2.1469 19 1 -4.3071 -8.2977 -3.0440 20 1 -2.0113 -9.0625 -2.8863 21 6 -1.4112 -8.6507 2.7009 22 6 -2.8809 -8.2274 2.6355 23 6 3.6368 -3.6735 0.0013 24 6 4.3286 -2.4779 0.0008 25 6 3.6430 -1.2769 0.0007 26 9 4.3229 -0.1095 0.0007 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4659 -2.4918 -0.0102 31 1 1.9075 -5.6580 -0.4854 32 1 0.1644 -6.9847 0.3284 33 1 -2.2575 -5.7434 0.9943 34 1 -1.3516 -5.9657 2.5103 35 1 -5.1057 -7.7373 -0.4605 36 1 -1.1791 -9.6965 2.5001 37 1 -0.7797 -8.1628 3.4433 38 1 -3.2154 -7.4612 3.3349 39 1 -3.6157 -8.9945 2.3916 40 1 4.1787 -4.6078 0.0018 41 1 5.4086 -2.4809 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352108959.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:53 Heat of formation + Delta-G solvation = -76.472876 kcal Electronic energy + Delta-G solvation = -26135.133039 eV Core-core repulsion = 22122.866417 eV Total energy + Delta-G solvation = -4012.266622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.95903 -41.72307 -40.59400 -39.32262 -38.38914 -35.63462 -34.97270 -33.92483 -33.21107 -30.36793 -30.34990 -27.93562 -26.95307 -25.29874 -23.75778 -22.88295 -21.84580 -21.31266 -21.11077 -19.40434 -18.77057 -18.55386 -17.86170 -17.47592 -16.86151 -16.71013 -16.60641 -16.36540 -15.85728 -15.82369 -15.68902 -15.61002 -15.18435 -14.81626 -14.42363 -14.30002 -13.99279 -13.78696 -13.47416 -13.37190 -13.16908 -13.13680 -12.90344 -12.79520 -12.69468 -12.33048 -11.97876 -11.48016 -11.34084 -11.16882 -10.91661 -10.85038 -10.40976 -10.22247 -10.08494 -9.83091 -9.08336 -8.05785 -6.20065 -0.58421 0.07685 1.21313 1.45440 1.49263 1.55801 1.63048 2.08018 2.45304 2.59881 2.89808 3.15037 3.21019 3.26671 3.58058 3.64799 3.95471 4.08211 4.11457 4.28881 4.38091 4.48033 4.53540 4.58799 4.70601 4.74648 4.78802 4.92546 4.98672 5.03509 5.05356 5.07501 5.16879 5.32174 5.34019 5.55598 5.64049 5.73734 5.81906 5.82206 6.05650 6.35328 6.40545 6.87986 7.11656 7.50114 7.55780 9.00758 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.017546 B = 0.002886 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.456890 B = 9700.804391 C = 9869.097881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.394 3.606 3 O -0.489 6.489 4 C -0.208 4.208 5 C -0.057 4.057 6 C 0.139 3.861 7 N -0.672 5.672 8 C 0.696 3.304 9 O -0.620 6.620 10 N -0.705 5.705 11 C 0.197 3.803 12 C 0.006 3.994 13 C -0.503 4.503 14 H 0.067 0.933 15 C 0.028 3.972 16 N -0.906 5.906 17 Si 0.946 3.054 18 H -0.282 1.282 19 H -0.296 1.296 20 H -0.259 1.259 21 C -0.180 4.180 22 C -0.156 4.156 23 C -0.066 4.066 24 C -0.135 4.135 25 C 0.111 3.889 26 F -0.136 7.136 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.148 0.852 31 H 0.427 0.573 32 H 0.411 0.589 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.258 0.742 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.183 0.817 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.458 4.955 -1.618 16.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.275 3.725 3 O -0.368 6.368 4 C -0.210 4.210 5 C -0.078 4.078 6 C 0.044 3.956 7 N -0.321 5.321 8 C 0.397 3.603 9 O -0.501 6.501 10 N -0.358 5.358 11 C 0.073 3.927 12 C 0.005 3.995 13 C -0.540 4.540 14 H 0.085 0.915 15 C -0.173 4.173 16 N -0.543 5.543 17 Si 0.772 3.228 18 H -0.208 1.208 19 H -0.222 1.222 20 H -0.183 1.183 21 C -0.217 4.217 22 C -0.194 4.194 23 C -0.086 4.086 24 C -0.154 4.154 25 C 0.090 3.910 26 F -0.115 7.115 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.165 0.835 31 H 0.267 0.733 32 H 0.247 0.753 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.200 0.800 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 15.106 6.420 -1.178 16.456 hybrid contribution -0.550 -0.794 -1.149 1.500 sum 14.556 5.627 -2.326 15.778 Atomic orbital electron populations 1.22235 0.91028 1.05843 1.05926 1.22814 0.93230 0.86688 0.69728 1.90556 1.73019 1.35003 1.38203 1.20552 0.92886 0.96074 1.11508 1.21529 1.01629 0.89577 0.95016 1.17621 0.91544 0.84860 1.01618 1.42376 1.22799 1.13409 1.53564 1.16112 0.80777 0.83924 0.79513 1.90857 1.67458 1.38073 1.53707 1.44924 1.24885 1.09113 1.56835 1.20447 0.82802 0.96604 0.92891 1.19084 1.00029 0.90341 0.90069 1.20643 0.99843 1.31956 1.01583 0.91455 1.25661 0.95896 0.95085 1.00690 1.70106 1.01453 1.43101 1.39686 0.85746 0.78240 0.77841 0.80926 1.20792 1.22228 1.18315 1.23035 0.96350 1.00224 1.02050 1.22384 0.92176 1.02482 1.02395 1.21363 0.90790 1.00021 0.96461 1.21236 1.02531 0.88964 1.02700 1.18274 0.89034 0.82449 1.01217 1.91522 1.79542 1.47070 1.93320 0.88027 0.88839 0.87339 0.83494 0.73332 0.75281 0.95271 0.94019 0.93327 0.89835 0.89413 0.91280 0.91887 0.79985 0.80559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.12 8.93 71.24 0.64 -3.49 16 2 C 0.39 10.81 7.22 27.98 0.20 11.01 16 3 O -0.49 -16.36 16.07 -3.01 -0.05 -16.41 16 4 C -0.21 -5.38 5.87 -20.13 -0.12 -5.49 16 5 C -0.06 -1.44 8.11 22.71 0.18 -1.25 16 6 C 0.14 2.95 6.29 38.06 0.24 3.18 16 7 N -0.67 -14.33 5.35 -317.26 -1.70 -16.03 16 8 C 0.70 21.73 8.40 179.05 1.50 23.24 16 9 O -0.62 -23.70 13.80 -4.00 -0.06 -23.75 16 10 N -0.70 -23.12 5.42 -478.53 -2.60 -25.72 16 11 C 0.20 8.05 5.56 86.38 0.48 8.53 16 12 C 0.01 0.24 1.60 -52.93 -0.08 0.15 16 13 C -0.50 -23.36 8.15 25.60 0.21 -23.15 16 14 H 0.07 2.97 7.82 -2.91 -0.02 2.95 16 15 C 0.03 1.37 5.43 84.66 0.46 1.83 16 16 N -0.91 -48.35 12.65 21.45 0.27 -48.08 16 17 Si 0.95 39.35 29.54 68.60 2.03 41.37 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 19 H -0.30 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 21 C -0.18 -6.62 9.93 30.62 0.30 -6.32 16 22 C -0.16 -6.71 9.17 30.62 0.28 -6.43 16 23 C -0.07 -0.93 9.95 22.45 0.22 -0.71 16 24 C -0.14 -2.15 10.00 22.26 0.22 -1.93 16 25 C 0.11 2.65 7.29 22.73 0.17 2.82 16 26 F -0.14 -3.81 15.54 44.97 0.70 -3.11 16 27 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 28 H 0.09 1.80 8.12 -2.39 -0.02 1.78 16 29 H 0.11 2.01 8.08 -2.39 -0.02 1.99 16 30 H 0.15 4.20 5.24 -2.91 -0.02 4.18 16 31 H 0.43 5.96 8.84 -92.71 -0.82 5.14 16 32 H 0.41 11.83 8.02 -92.71 -0.74 11.08 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.26 13.40 8.32 -92.71 -0.77 12.62 16 36 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 39 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -65.86 359.05 3.04 -62.82 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: -0.47 Total: 26.92 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 4.91 Total: 1.98 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -4.02 Total: -89.82 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.10 Total: -40.16 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.70 Total: -3.11 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.37 kcal Total: -65.86 3.04 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352108959.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.648 kcal (2) G-P(sol) polarization free energy of solvation -65.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds