Wall clock time and date at job start Tue Mar 31 2020 13:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99511 * 2 1 4 4 O 1.21572 * 119.99798 * 186.62617 * 3 2 1 5 5 C 1.47853 * 120.00555 * 6.63084 * 3 2 1 6 6 C 1.39933 * 120.02135 * 20.66261 * 5 3 2 7 7 C 1.38331 * 120.35644 * 179.76405 * 6 5 3 8 8 C 1.37759 * 120.40967 * 0.51359 * 7 6 5 9 9 C 1.40753 * 120.04433 * 359.74184 * 8 7 6 10 10 C 1.41428 * 120.17690 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99968 * 30.33774 * 10 9 8 12 12 C 1.39944 * 120.00458 * 210.32972 * 10 9 8 13 13 N 1.30829 * 119.99289 * 6.31968 * 12 10 9 14 14 Si 1.86792 * 120.00425 * 186.32302 * 12 10 9 15 15 H 1.48503 * 109.47107 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47606 * 119.99969 * 14 12 10 17 17 H 1.48502 * 109.47299 * 240.00165 * 14 12 10 18 18 C 1.39004 * 120.02786 * 200.93845 * 5 3 2 19 19 C 1.39917 * 120.00259 * 180.02562 * 2 1 3 20 20 C 1.39438 * 119.74642 * 186.80701 * 19 2 1 21 21 C 1.36513 * 120.45659 * 180.02562 * 20 19 2 22 22 C 1.39681 * 119.86456 * 0.02562 * 21 20 19 23 23 C 1.46545 * 133.91927 * 179.97438 * 22 21 20 24 24 C 1.34204 * 107.01309 * 180.02562 * 23 22 21 25 25 N 1.36945 * 109.92355 * 0.26282 * 24 23 22 26 26 H 0.97003 * 125.07141 * 179.70987 * 25 24 23 27 27 C 1.37702 * 109.85715 * 359.55772 * 25 24 23 28 28 C 1.38383 * 119.74508 * 6.83463 * 19 2 1 29 29 H 1.09005 * 109.46487 * 263.99811 * 1 2 3 30 30 H 1.08993 * 109.47214 * 23.99705 * 1 2 3 31 31 H 1.09004 * 109.46937 * 144.00292 * 1 2 3 32 32 H 1.07998 * 119.82493 * 0.02562 * 6 5 3 33 33 H 1.07992 * 119.79713 * 180.25642 * 7 6 5 34 34 H 1.08000 * 119.97467 * 179.76351 * 8 7 6 35 35 H 0.97005 * 119.99185 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.20908 * 359.94971 * 18 5 3 37 37 H 1.07991 * 119.77225 * 0.02835 * 20 19 2 38 38 H 1.07997 * 120.06904 * 180.02562 * 21 20 19 39 39 H 1.08008 * 126.48952 * 359.97438 * 23 22 21 40 40 H 1.08007 * 125.03206 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.14377 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3484 1.1708 -0.1215 5 6 1.4070 2.4434 0.1478 6 6 0.1247 2.4543 0.7080 7 6 -0.5643 3.6449 0.8541 8 6 -0.0008 4.8319 0.4404 9 6 1.2859 4.8401 -0.1302 10 6 1.8673 6.0572 -0.5554 11 1 1.6184 6.9795 -0.0517 12 6 2.7654 6.0664 -1.6287 13 7 2.9729 4.9735 -2.3172 14 14 3.6676 7.6390 -2.0781 15 1 3.2602 8.7256 -1.1515 16 1 5.1320 7.4184 -1.9680 17 1 3.3284 8.0233 -3.4719 18 6 1.9898 3.6325 -0.2747 19 6 2.1647 -1.2117 -0.0005 20 6 3.5517 -1.2098 0.1430 21 6 4.2488 -2.3835 0.1439 22 6 3.5701 -3.5957 -0.0002 23 6 3.9924 -4.9984 -0.0422 24 6 2.8838 -5.7376 -0.2025 25 7 1.7856 -4.9226 -0.2726 26 1 0.8722 -5.2270 -0.3913 27 6 2.1708 -3.6066 -0.1461 28 6 1.4749 -2.4027 -0.1441 29 1 -0.3632 -0.1075 1.0221 30 1 -0.3633 0.9388 -0.4179 31 1 -0.3633 -0.8315 -0.6040 32 1 -0.3278 1.5287 1.0319 33 1 -1.5517 3.6433 1.2913 34 1 -0.5465 5.7569 0.5542 35 1 3.5957 4.9798 -3.0609 36 1 2.9778 3.6284 -0.7109 37 1 4.0780 -0.2734 0.2541 38 1 5.3230 -2.3747 0.2559 39 1 5.0042 -5.3673 0.0395 40 1 2.8617 -6.8153 -0.2703 41 1 0.4006 -2.3973 -0.2548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352445808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:28 Heat of formation + Delta-G solvation = 87.288060 kcal Electronic energy + Delta-G solvation = -25441.479826 eV Core-core repulsion = 21867.083636 eV Total energy + Delta-G solvation = -3574.396190 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.19940 -40.10250 -37.51878 -36.48384 -35.05929 -33.66431 -31.63383 -30.46490 -29.57139 -29.25471 -28.13093 -26.84373 -25.32169 -23.32942 -22.43268 -21.05267 -20.91450 -20.60974 -19.28202 -18.05694 -17.28660 -16.78172 -16.27425 -15.65936 -15.33234 -15.15456 -14.68212 -14.28063 -14.23450 -13.79743 -13.63776 -13.31335 -13.19523 -13.02185 -12.85709 -12.72251 -12.57123 -12.09618 -11.83734 -11.69956 -11.53624 -11.17969 -11.09595 -10.80778 -10.55785 -10.33690 -9.97494 -9.91095 -9.66467 -9.31242 -9.14144 -8.76718 -7.83875 -7.71879 -7.49797 -7.22093 -6.76504 -4.49113 1.22808 1.83340 2.15203 2.73625 2.78770 2.97845 3.07069 3.09189 3.11742 3.35939 3.63530 3.90903 4.19257 4.58707 4.84019 4.87094 5.13714 5.16219 5.38623 5.42486 5.49253 5.56614 5.57876 5.70577 5.78539 5.92813 6.02218 6.04127 6.15312 6.22268 6.46187 6.59555 6.64107 6.82079 6.90074 6.93455 6.98447 6.99067 7.17890 7.30475 7.47797 7.53424 7.58537 7.66754 7.76824 7.92758 8.10946 8.44756 8.66182 8.76574 8.78956 10.16789 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003012 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.350919 B = 9293.186757 C =10312.219384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.555 5.555 3 C 0.569 3.431 4 O -0.516 6.516 5 C -0.134 4.134 6 C -0.232 4.232 7 C -0.103 4.103 8 C -0.201 4.201 9 C 0.096 3.904 10 C -0.459 4.459 11 H 0.081 0.919 12 C 0.070 3.930 13 N -0.799 5.799 14 Si 0.915 3.085 15 H -0.261 1.261 16 H -0.271 1.271 17 H -0.274 1.274 18 C -0.080 4.080 19 C 0.197 3.803 20 C -0.185 4.185 21 C -0.052 4.052 22 C -0.141 4.141 23 C -0.197 4.197 24 C 0.032 3.968 25 N -0.600 5.600 26 H 0.411 0.589 27 C 0.121 3.879 28 C -0.194 4.194 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.283 0.717 36 H 0.139 0.861 37 H 0.181 0.819 38 H 0.122 0.878 39 H 0.142 0.858 40 H 0.165 0.835 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.392 -15.872 2.571 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.276 5.276 3 C 0.363 3.637 4 O -0.393 6.393 5 C -0.137 4.137 6 C -0.251 4.251 7 C -0.122 4.122 8 C -0.221 4.221 9 C 0.093 3.907 10 C -0.489 4.489 11 H 0.099 0.901 12 C -0.148 4.148 13 N -0.425 5.425 14 Si 0.740 3.260 15 H -0.185 1.185 16 H -0.197 1.197 17 H -0.199 1.199 18 C -0.100 4.100 19 C 0.100 3.900 20 C -0.204 4.204 21 C -0.071 4.071 22 C -0.146 4.146 23 C -0.222 4.222 24 C -0.093 4.093 25 N -0.204 5.204 26 H 0.247 0.753 27 C 0.013 3.987 28 C -0.219 4.219 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.156 0.844 37 H 0.197 0.803 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.182 0.818 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.753 -15.904 2.274 16.300 hybrid contribution -0.283 0.259 -0.416 0.565 sum -3.035 -15.645 1.858 16.045 Atomic orbital electron populations 1.22745 0.78606 1.05136 1.01910 1.45384 1.07595 1.04286 1.70358 1.19126 0.86883 0.83437 0.74215 1.90393 1.14426 1.86073 1.48458 1.19354 0.95832 0.91579 1.06915 1.21288 0.95869 0.98038 1.09926 1.20500 0.98237 0.92981 1.00462 1.21241 0.95982 0.96401 1.08477 1.17630 0.90176 0.93137 0.89717 1.19612 1.21670 0.94532 1.13062 0.90119 1.25941 0.95309 0.98051 0.95451 1.69732 1.29001 1.28201 1.15538 0.86137 0.79495 0.81452 0.78920 1.18467 1.19663 1.19922 1.21757 1.00239 0.89942 0.98043 1.17634 0.91563 0.84327 0.96488 1.22210 0.92798 1.01592 1.03833 1.20281 0.99359 0.90037 0.97446 1.19240 0.92251 0.93709 1.09432 1.21665 0.98033 0.91154 1.11346 1.21673 0.85902 0.95976 1.05787 1.41712 1.09003 1.04288 1.65440 0.75268 1.17781 0.93768 0.84420 1.02709 1.19400 0.99072 0.88654 1.14773 0.91626 0.86846 0.91735 0.86496 0.88679 0.88473 0.90628 0.84384 0.80281 0.85959 0.84051 0.81780 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 8.11 59.85 0.49 1.29 16 2 N -0.55 -9.99 3.10 -121.84 -0.38 -10.37 16 3 C 0.57 12.39 7.43 -12.33 -0.09 12.29 16 4 O -0.52 -12.34 12.99 5.30 0.07 -12.27 16 5 C -0.13 -3.05 5.56 -105.04 -0.58 -3.63 16 6 C -0.23 -4.61 7.59 -38.91 -0.30 -4.90 16 7 C -0.10 -2.09 10.01 -39.72 -0.40 -2.48 16 8 C -0.20 -4.58 9.78 -38.81 -0.38 -4.96 16 9 C 0.10 2.46 5.55 -106.87 -0.59 1.87 16 10 C -0.46 -11.80 9.06 -37.73 -0.34 -12.14 16 11 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 12 C 0.07 1.73 5.32 -17.34 -0.09 1.63 16 13 N -0.80 -20.74 10.72 55.55 0.60 -20.15 16 14 Si 0.92 18.63 29.56 -169.99 -5.03 13.61 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 C -0.08 -2.06 8.19 -38.44 -0.31 -2.37 16 19 C 0.20 3.43 6.49 -83.67 -0.54 2.89 16 20 C -0.18 -3.35 8.91 -39.76 -0.35 -3.70 16 21 C -0.05 -0.82 10.04 -39.67 -0.40 -1.22 16 22 C -0.14 -2.10 6.37 -105.08 -0.67 -2.77 16 23 C -0.20 -2.31 11.08 -37.66 -0.42 -2.73 16 24 C 0.03 0.30 11.82 -16.69 -0.20 0.11 16 25 N -0.60 -6.24 6.08 -10.64 -0.06 -6.30 16 26 H 0.41 2.94 8.96 -40.82 -0.37 2.57 16 27 C 0.12 1.70 7.27 -84.00 -0.61 1.09 16 28 C -0.19 -2.86 9.27 -39.22 -0.36 -3.22 16 29 H 0.07 0.80 7.15 -51.93 -0.37 0.43 16 30 H 0.11 1.72 5.02 -51.93 -0.26 1.45 16 31 H 0.06 0.74 6.25 -51.93 -0.32 0.42 16 32 H 0.12 1.92 4.08 -52.49 -0.21 1.70 16 33 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 36 H 0.14 3.87 5.90 -52.49 -0.31 3.56 16 37 H 0.18 3.65 4.64 -55.64 -0.26 3.39 16 38 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 39 H 0.14 1.35 8.06 -52.48 -0.42 0.93 16 40 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 41 H 0.12 1.48 6.10 -52.49 -0.32 1.16 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -30.23 336.19 -9.98 -40.21 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -4.09 Total: 13.17 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -6.16 Total: -22.96 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.15 Total: -36.82 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.23 -9.98 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352445808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.500 kcal (2) G-P(sol) polarization free energy of solvation -30.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds