Wall clock time and date at job start Tue Mar 31 2020 13:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34771 * 119.99511 * 2 1 4 4 O 1.21572 * 119.99798 * 186.62617 * 3 2 1 5 5 C 1.47853 * 120.00555 * 6.63084 * 3 2 1 6 6 C 1.39933 * 120.02135 * 20.66261 * 5 3 2 7 7 C 1.38331 * 120.35644 * 179.76405 * 6 5 3 8 8 C 1.37759 * 120.40967 * 0.51359 * 7 6 5 9 9 C 1.40753 * 120.04433 * 359.74184 * 8 7 6 10 10 C 1.41428 * 120.17690 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99968 * 30.33774 * 10 9 8 12 12 C 1.39944 * 120.00458 * 210.32972 * 10 9 8 13 13 N 1.30829 * 119.99289 * 6.31968 * 12 10 9 14 14 Si 1.86792 * 120.00425 * 186.32302 * 12 10 9 15 15 H 1.48503 * 109.47107 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47606 * 119.99969 * 14 12 10 17 17 H 1.48502 * 109.47299 * 240.00165 * 14 12 10 18 18 C 1.39004 * 120.02786 * 200.93845 * 5 3 2 19 19 C 1.39917 * 120.00259 * 180.02562 * 2 1 3 20 20 C 1.39438 * 119.74642 * 186.80701 * 19 2 1 21 21 C 1.36513 * 120.45659 * 180.02562 * 20 19 2 22 22 C 1.39681 * 119.86456 * 0.02562 * 21 20 19 23 23 C 1.46545 * 133.91927 * 179.97438 * 22 21 20 24 24 C 1.34204 * 107.01309 * 180.02562 * 23 22 21 25 25 N 1.36945 * 109.92355 * 0.26282 * 24 23 22 26 26 H 0.97003 * 125.07141 * 179.70987 * 25 24 23 27 27 C 1.37702 * 109.85715 * 359.55772 * 25 24 23 28 28 C 1.38383 * 119.74508 * 6.83463 * 19 2 1 29 29 H 1.09005 * 109.46487 * 263.99811 * 1 2 3 30 30 H 1.08993 * 109.47214 * 23.99705 * 1 2 3 31 31 H 1.09004 * 109.46937 * 144.00292 * 1 2 3 32 32 H 1.07998 * 119.82493 * 0.02562 * 6 5 3 33 33 H 1.07992 * 119.79713 * 180.25642 * 7 6 5 34 34 H 1.08000 * 119.97467 * 179.76351 * 8 7 6 35 35 H 0.97005 * 119.99185 * 180.02562 * 13 12 10 36 36 H 1.07995 * 120.20908 * 359.94971 * 18 5 3 37 37 H 1.07991 * 119.77225 * 0.02835 * 20 19 2 38 38 H 1.07997 * 120.06904 * 180.02562 * 21 20 19 39 39 H 1.08008 * 126.48952 * 359.97438 * 23 22 21 40 40 H 1.08007 * 125.03206 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.14377 * 359.97438 * 28 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3484 1.1708 -0.1215 5 6 1.4070 2.4434 0.1478 6 6 0.1247 2.4543 0.7080 7 6 -0.5643 3.6449 0.8541 8 6 -0.0008 4.8319 0.4404 9 6 1.2859 4.8401 -0.1302 10 6 1.8673 6.0572 -0.5554 11 1 1.6184 6.9795 -0.0517 12 6 2.7654 6.0664 -1.6287 13 7 2.9729 4.9735 -2.3172 14 14 3.6676 7.6390 -2.0781 15 1 3.2602 8.7256 -1.1515 16 1 5.1320 7.4184 -1.9680 17 1 3.3284 8.0233 -3.4719 18 6 1.9898 3.6325 -0.2747 19 6 2.1647 -1.2117 -0.0005 20 6 3.5517 -1.2098 0.1430 21 6 4.2488 -2.3835 0.1439 22 6 3.5701 -3.5957 -0.0002 23 6 3.9924 -4.9984 -0.0422 24 6 2.8838 -5.7376 -0.2025 25 7 1.7856 -4.9226 -0.2726 26 1 0.8722 -5.2270 -0.3913 27 6 2.1708 -3.6066 -0.1461 28 6 1.4749 -2.4027 -0.1441 29 1 -0.3632 -0.1075 1.0221 30 1 -0.3633 0.9388 -0.4179 31 1 -0.3633 -0.8315 -0.6040 32 1 -0.3278 1.5287 1.0319 33 1 -1.5517 3.6433 1.2913 34 1 -0.5465 5.7569 0.5542 35 1 3.5957 4.9798 -3.0609 36 1 2.9778 3.6284 -0.7109 37 1 4.0780 -0.2734 0.2541 38 1 5.3230 -2.3747 0.2559 39 1 5.0042 -5.3673 0.0395 40 1 2.8617 -6.8153 -0.2703 41 1 0.4006 -2.3973 -0.2548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352445808.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:28 Heat of formation + Delta-G solvation = 70.365249 kcal Electronic energy + Delta-G solvation = -25442.213654 eV Core-core repulsion = 21867.083636 eV Total energy + Delta-G solvation = -3575.130018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.33878 -41.45910 -39.16109 -37.93240 -36.43564 -35.40290 -32.81265 -32.00225 -31.33405 -30.38729 -29.33301 -28.11799 -27.10636 -24.79124 -23.67244 -22.66297 -22.39984 -21.51975 -20.75276 -19.51083 -18.70007 -17.95950 -17.77891 -17.22946 -16.78869 -16.75517 -16.14766 -15.75428 -15.28963 -15.08994 -14.82204 -14.72155 -14.65038 -14.35029 -14.24053 -14.15608 -13.88453 -13.63249 -13.24074 -13.04752 -12.98493 -12.82120 -12.67194 -12.28359 -11.97561 -11.88712 -11.74150 -11.37408 -11.11272 -11.07544 -10.38409 -10.20201 -9.52705 -9.30125 -8.90959 -8.59042 -8.34756 -6.41672 -0.00767 0.42461 0.71813 0.99864 1.36767 1.45197 1.52174 1.72316 1.81735 2.05047 2.20163 2.39632 2.77050 2.98618 3.55605 3.65600 3.86160 4.02024 4.10347 4.32279 4.39066 4.45290 4.46296 4.54333 4.56485 4.68124 4.69573 4.83826 4.87073 5.05162 5.06538 5.10241 5.15109 5.27636 5.36137 5.44922 5.51224 5.65746 5.83101 5.85276 5.90212 5.93112 6.06106 6.21808 6.27629 6.36420 6.60197 6.80986 6.89422 6.93617 7.09148 8.35924 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.021363 B = 0.003012 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.350919 B = 9293.186757 C =10312.219384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.548 5.548 3 C 0.557 3.443 4 O -0.556 6.556 5 C -0.143 4.143 6 C -0.205 4.205 7 C -0.101 4.101 8 C -0.204 4.204 9 C 0.062 3.938 10 C -0.496 4.496 11 H 0.082 0.918 12 C 0.024 3.976 13 N -0.840 5.840 14 Si 0.986 3.014 15 H -0.252 1.252 16 H -0.272 1.272 17 H -0.265 1.265 18 C -0.118 4.118 19 C 0.160 3.840 20 C -0.213 4.213 21 C -0.063 4.063 22 C -0.156 4.156 23 C -0.228 4.228 24 C 0.064 3.936 25 N -0.586 5.586 26 H 0.431 0.569 27 C 0.106 3.894 28 C -0.173 4.173 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.111 0.889 35 H 0.283 0.717 36 H 0.100 0.900 37 H 0.147 0.853 38 H 0.130 0.870 39 H 0.158 0.842 40 H 0.215 0.785 41 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -19.461 3.293 20.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.269 5.269 3 C 0.351 3.649 4 O -0.436 6.436 5 C -0.146 4.146 6 C -0.224 4.224 7 C -0.119 4.119 8 C -0.223 4.223 9 C 0.060 3.940 10 C -0.526 4.526 11 H 0.100 0.900 12 C -0.188 4.188 13 N -0.468 5.468 14 Si 0.807 3.193 15 H -0.175 1.175 16 H -0.197 1.197 17 H -0.190 1.190 18 C -0.138 4.138 19 C 0.065 3.935 20 C -0.233 4.233 21 C -0.082 4.082 22 C -0.161 4.161 23 C -0.252 4.252 24 C -0.061 4.061 25 N -0.191 5.191 26 H 0.270 0.730 27 C -0.003 4.003 28 C -0.197 4.197 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.164 0.836 38 H 0.148 0.852 39 H 0.176 0.824 40 H 0.232 0.768 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.869 -19.545 3.008 20.628 hybrid contribution 0.550 0.976 -0.548 1.247 sum -5.319 -18.569 2.460 19.472 Atomic orbital electron populations 1.22998 0.76084 1.05968 1.04259 1.45292 1.09030 1.03283 1.69259 1.19113 0.86574 0.84498 0.74673 1.90412 1.16059 1.86845 1.50322 1.19618 0.97158 0.91246 1.06562 1.21874 0.93957 1.00049 1.06527 1.21011 0.99990 0.91681 0.99167 1.21551 0.95003 0.98367 1.07424 1.17961 0.91760 0.93183 0.91087 1.19865 1.23649 0.94829 1.14292 0.89963 1.26824 0.95758 1.01224 0.95044 1.69865 1.30181 1.30342 1.16366 0.85086 0.77800 0.77468 0.78920 1.17526 1.19737 1.19020 1.21512 0.99574 0.91804 1.00947 1.17738 0.91401 0.84952 0.99422 1.21965 0.93966 1.01108 1.06294 1.20365 0.99898 0.90200 0.97717 1.19647 0.93206 0.94701 1.08595 1.21983 1.00040 0.89674 1.13542 1.22458 0.84482 0.97846 1.01352 1.41790 1.10481 1.02802 1.64003 0.72965 1.17890 0.93559 0.85872 1.03000 1.19591 1.00367 0.87651 1.12093 0.88734 0.88008 0.88456 0.82008 0.83834 0.87126 0.90658 0.88160 0.83629 0.85213 0.82420 0.76818 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.16 8.11 127.77 1.04 2.19 16 2 N -0.55 -19.65 3.10 -657.67 -2.04 -21.68 16 3 C 0.56 25.61 7.43 86.79 0.64 26.26 16 4 O -0.56 -29.30 12.99 -3.94 -0.05 -29.35 16 5 C -0.14 -6.74 5.56 -20.14 -0.11 -6.86 16 6 C -0.21 -7.78 7.59 22.70 0.17 -7.61 16 7 C -0.10 -3.80 10.01 22.18 0.22 -3.57 16 8 C -0.20 -9.27 9.78 22.77 0.22 -9.05 16 9 C 0.06 3.36 5.55 -21.32 -0.12 3.24 16 10 C -0.50 -27.07 9.06 23.47 0.21 -26.86 16 11 H 0.08 4.25 7.85 -2.91 -0.02 4.22 16 12 C 0.02 1.26 5.32 85.26 0.45 1.71 16 13 N -0.84 -47.25 10.72 21.83 0.23 -47.02 16 14 Si 0.99 40.29 29.56 68.60 2.03 42.31 16 15 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 17 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 18 C -0.12 -6.54 8.19 23.01 0.19 -6.35 16 19 C 0.16 5.62 6.49 38.17 0.25 5.87 16 20 C -0.21 -8.26 8.91 22.16 0.20 -8.06 16 21 C -0.06 -2.06 10.04 22.22 0.22 -1.84 16 22 C -0.16 -4.44 6.37 -20.16 -0.13 -4.56 16 23 C -0.23 -4.66 11.08 23.52 0.26 -4.40 16 24 C 0.06 0.90 11.82 82.97 0.98 1.88 16 25 N -0.59 -9.33 6.08 -187.57 -1.14 -10.47 16 26 H 0.43 3.71 8.96 -92.71 -0.83 2.88 16 27 C 0.11 2.66 7.27 39.02 0.28 2.95 16 28 C -0.17 -4.65 9.27 22.50 0.21 -4.44 16 29 H 0.09 1.83 7.15 -2.38 -0.02 1.81 16 30 H 0.10 2.78 5.02 -2.39 -0.01 2.77 16 31 H 0.10 1.80 6.25 -2.39 -0.01 1.78 16 32 H 0.16 4.64 4.08 -2.91 -0.01 4.63 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 35 H 0.28 14.72 8.30 -92.70 -0.77 13.95 16 36 H 0.10 6.27 5.90 -2.91 -0.02 6.25 16 37 H 0.15 6.66 4.64 -52.75 -0.25 6.41 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 41 H 0.15 3.00 6.10 -2.91 -0.02 2.98 16 Total: -1.00 -75.48 336.19 4.27 -71.21 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.04 Total: 34.51 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 5.20 Total: -39.51 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -2.94 Total: -79.17 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.05 Total: -29.35 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Total: -75.48 4.27 -71.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352445808.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.570 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds