Wall clock time and date at job start Tue Mar 31 2020 13:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99901 * 2 1 4 4 C 1.38772 * 120.04564 * 0.02562 * 3 2 1 5 5 C 1.38134 * 119.99556 * 179.70275 * 4 3 2 6 6 C 1.38248 * 120.08040 * 0.52735 * 5 4 3 7 7 C 1.50703 * 119.95631 * 179.76839 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.72349 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47162 * 90.00410 * 11 10 8 13 13 H 1.07998 * 119.99576 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00057 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47241 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47303 * 119.99759 * 16 14 12 19 19 H 1.48495 * 109.47340 * 239.99921 * 16 14 12 20 20 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 21 21 C 1.53001 * 109.47305 * 89.99580 * 20 10 8 22 22 C 1.47208 * 109.47132 * 179.97438 * 21 20 10 23 23 N 9.37196 * 152.95494 * 207.12201 * 3 1 2 24 24 C 1.38473 * 120.08710 * 359.49355 * 6 5 4 25 25 F 1.35090 * 119.99955 * 180.25563 * 24 6 5 26 26 C 1.38393 * 120.00343 * 0.22956 * 24 6 5 27 27 H 1.09000 * 109.47074 * 300.00206 * 1 2 3 28 28 H 1.09003 * 109.46895 * 60.00031 * 1 2 3 29 29 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99964 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.95531 * 180.29840 * 5 4 3 32 32 H 1.09002 * 109.47152 * 144.72441 * 7 6 5 33 33 H 1.09001 * 109.46980 * 24.72542 * 7 6 5 34 34 H 1.09000 * 109.47018 * 209.99971 * 11 10 8 35 35 H 1.09000 * 109.47828 * 330.00266 * 11 10 8 36 36 H 0.97001 * 119.99961 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.47028 * 209.99878 * 20 10 8 38 38 H 1.09002 * 109.47109 * 329.99455 * 20 10 8 39 39 H 1.09001 * 109.47263 * 299.99631 * 21 20 10 40 40 H 1.08996 * 109.47107 * 60.00334 * 21 20 10 41 41 H 1.07997 * 120.03907 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0067 6 6 3.2997 3.6786 0.0014 7 6 3.9821 5.0223 0.0029 8 6 4.3204 5.4155 -1.4120 9 8 4.0350 4.6775 -2.3311 10 7 4.9391 6.5878 -1.6560 11 6 5.2674 6.9702 -3.0316 12 6 4.1178 7.7421 -3.6264 13 1 3.2311 7.9286 -3.0386 14 6 4.1979 8.2100 -4.9208 15 7 5.2779 7.9832 -5.6363 16 14 2.7733 9.1673 -5.6578 17 1 1.6850 9.2861 -4.6544 18 1 3.2371 10.5229 -6.0483 19 1 2.2648 8.4537 -6.8566 20 6 5.2833 7.4794 -0.5459 21 6 6.6846 7.1393 -0.0342 22 6 7.0307 8.0357 1.0810 23 7 7.2977 8.7260 1.9427 24 6 4.0564 2.5189 0.0004 25 9 5.4053 2.5924 0.0004 26 6 3.4307 1.2844 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2124 2.3195 0.0005 31 1 1.3310 4.5113 0.0120 32 1 4.8971 4.9645 0.5926 33 1 3.3161 5.7675 0.4378 34 1 6.1619 7.5930 -3.0319 35 1 5.4486 6.0738 -3.6246 36 1 5.3344 8.3127 -6.5469 37 1 5.2633 8.5133 -0.8906 38 1 4.5611 7.3512 0.2604 39 1 6.7046 6.1055 0.3105 40 1 7.4068 7.2676 -0.8405 41 1 4.0203 0.3796 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352490976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:03 Heat of formation + Delta-G solvation = -66.155275 kcal Electronic energy + Delta-G solvation = -26328.514547 eV Core-core repulsion = 22316.695329 eV Total energy + Delta-G solvation = -4011.819217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.85663 -40.26255 -39.29411 -37.43568 -36.78208 -35.19907 -33.01799 -32.20195 -30.83312 -30.74983 -28.43782 -27.47582 -26.14197 -23.99870 -23.14053 -22.76029 -21.39726 -18.67452 -18.45670 -17.60911 -17.03917 -16.65420 -16.45175 -16.09874 -16.00062 -15.81794 -15.32164 -15.10207 -14.72197 -14.69599 -14.45092 -14.07773 -13.73102 -13.56708 -13.07966 -12.88510 -12.65738 -12.52119 -12.41840 -12.35955 -12.20019 -11.87711 -11.76032 -11.51476 -11.24853 -11.07941 -11.03035 -10.95300 -10.81121 -10.62151 -10.19623 -9.69184 -9.08130 -8.88964 -8.47868 -8.19702 -7.83593 -6.08942 -4.13512 1.12503 1.22412 2.74849 2.83272 2.96586 3.27248 3.30159 3.35803 3.38980 3.45226 3.73427 4.25214 4.37755 4.41713 4.60403 4.69649 4.79889 4.89537 4.92624 4.98600 5.12817 5.18442 5.20382 5.22963 5.26986 5.28714 5.42541 5.56329 5.60800 5.84107 5.93666 5.94976 6.09324 6.16072 6.33539 6.62938 6.94777 7.17160 7.37562 7.43792 7.59328 7.87209 8.17453 8.26494 8.84237 8.99381 9.52000 10.99247 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.004027 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.544794 B = 6951.440402 C = 9001.267291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.150 3.850 4 C -0.216 4.216 5 C -0.038 4.038 6 C -0.125 4.125 7 C -0.104 4.104 8 C 0.510 3.490 9 O -0.524 6.524 10 N -0.598 5.598 11 C 0.245 3.755 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.117 3.883 21 C -0.052 4.052 22 C 0.218 3.782 23 N -0.446 5.446 24 C 0.155 3.845 25 F -0.130 7.130 26 C -0.189 4.189 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.231 -11.312 14.106 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.104 3.896 4 C -0.235 4.235 5 C -0.056 4.056 6 C -0.127 4.127 7 C -0.144 4.144 8 C 0.296 3.704 9 O -0.400 6.400 10 N -0.330 5.330 11 C 0.126 3.874 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.009 4.009 21 C -0.094 4.094 22 C -0.100 4.100 23 N -0.124 5.124 24 C 0.135 3.865 25 F -0.109 7.109 26 C -0.209 4.209 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.767 -10.833 14.682 19.135 hybrid contribution -0.809 0.500 -0.926 1.327 sum -6.576 -10.333 13.756 18.418 Atomic orbital electron populations 1.23089 0.78094 1.03980 1.01644 1.86049 1.21590 1.26680 1.88582 1.18552 0.91360 0.84331 0.95309 1.21200 1.00278 0.91992 1.10051 1.20666 0.92781 0.97615 0.94583 1.19294 0.93912 0.93356 1.06126 1.20706 1.02074 0.94472 0.97171 1.20168 0.78639 0.81697 0.89934 1.90711 1.52047 1.51221 1.45985 1.48199 1.57902 1.17845 1.09005 1.19349 0.96096 0.96693 0.75266 1.21453 1.02368 1.34474 0.98343 0.92336 1.24918 0.96012 0.96264 0.96815 1.69931 1.27304 1.46022 1.09937 0.86471 0.82406 0.79464 0.79241 1.19823 1.20982 1.20918 1.21310 0.92440 0.96827 0.90320 1.19924 1.00991 0.96544 0.91903 1.29107 0.93110 0.93778 0.94002 1.81201 1.09088 1.10356 1.11743 1.17010 0.76865 0.93037 0.99578 1.91496 1.28841 1.97083 1.93455 1.20127 0.92503 0.97421 1.10833 0.92514 0.92308 0.88207 0.84936 0.84699 0.88349 0.87899 0.94722 0.93580 0.92733 0.88735 0.90613 0.87479 0.86467 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.49 10.50 -19.40 -0.20 -3.70 16 3 C 0.15 1.85 6.69 -39.22 -0.26 1.59 16 4 C -0.22 -2.45 9.04 -39.42 -0.36 -2.81 16 5 C -0.04 -0.47 9.67 -39.62 -0.38 -0.85 16 6 C -0.13 -1.74 4.38 -104.53 -0.46 -2.20 16 7 C -0.10 -1.37 4.15 -29.03 -0.12 -1.49 16 8 C 0.51 9.41 7.67 -10.98 -0.08 9.33 16 9 O -0.52 -12.31 15.61 5.56 0.09 -12.22 16 10 N -0.60 -10.89 2.46 -175.06 -0.43 -11.32 16 11 C 0.24 5.80 5.16 -5.19 -0.03 5.78 16 12 C -0.53 -14.02 9.39 -34.44 -0.32 -14.35 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 15 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 16 Si 0.90 21.14 29.54 -169.99 -5.02 16.11 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.12 1.54 5.17 -4.05 -0.02 1.52 16 21 C -0.05 -0.55 6.03 -29.51 -0.18 -0.73 16 22 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 23 N -0.45 -6.56 18.54 42.15 0.78 -5.78 16 24 C 0.15 2.22 7.24 -39.44 -0.29 1.94 16 25 F -0.13 -1.93 16.56 2.25 0.04 -1.89 16 26 C -0.19 -2.50 9.97 -39.36 -0.39 -2.89 16 27 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.13 1.14 6.30 -52.48 -0.33 0.81 16 31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.10 1.06 6.83 -51.93 -0.35 0.71 16 33 H 0.10 1.08 7.31 -51.93 -0.38 0.70 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.05 1.26 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 38 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 39 H 0.11 0.95 7.22 -51.93 -0.38 0.58 16 40 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -34.39 364.56 -5.87 -40.26 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.03 Total: -2.09 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.32 Total: -0.07 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 1.09 Total: -41.90 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.12 Total: -15.92 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.39 -5.87 -40.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352490976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.897 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds