Wall clock time and date at job start Tue Mar 31 2020 13:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99901 * 2 1 4 4 C 1.38772 * 120.04564 * 0.02562 * 3 2 1 5 5 C 1.38134 * 119.99556 * 179.70275 * 4 3 2 6 6 C 1.38248 * 120.08040 * 0.52735 * 5 4 3 7 7 C 1.50703 * 119.95631 * 179.76839 * 6 5 4 8 8 C 1.50701 * 109.47064 * 264.72349 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47162 * 90.00410 * 11 10 8 13 13 H 1.07998 * 119.99576 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00057 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47241 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47303 * 119.99759 * 16 14 12 19 19 H 1.48495 * 109.47340 * 239.99921 * 16 14 12 20 20 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 21 21 C 1.53001 * 109.47305 * 89.99580 * 20 10 8 22 22 C 1.47208 * 109.47132 * 179.97438 * 21 20 10 23 23 N 9.37196 * 152.95494 * 207.12201 * 3 1 2 24 24 C 1.38473 * 120.08710 * 359.49355 * 6 5 4 25 25 F 1.35090 * 119.99955 * 180.25563 * 24 6 5 26 26 C 1.38393 * 120.00343 * 0.22956 * 24 6 5 27 27 H 1.09000 * 109.47074 * 300.00206 * 1 2 3 28 28 H 1.09003 * 109.46895 * 60.00031 * 1 2 3 29 29 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08005 * 119.99964 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.95531 * 180.29840 * 5 4 3 32 32 H 1.09002 * 109.47152 * 144.72441 * 7 6 5 33 33 H 1.09001 * 109.46980 * 24.72542 * 7 6 5 34 34 H 1.09000 * 109.47018 * 209.99971 * 11 10 8 35 35 H 1.09000 * 109.47828 * 330.00266 * 11 10 8 36 36 H 0.97001 * 119.99961 * 180.02562 * 15 14 12 37 37 H 1.09006 * 109.47028 * 209.99878 * 20 10 8 38 38 H 1.09002 * 109.47109 * 329.99455 * 20 10 8 39 39 H 1.09001 * 109.47263 * 299.99631 * 21 20 10 40 40 H 1.08996 * 109.47107 * 60.00334 * 21 20 10 41 41 H 1.07997 * 120.03907 * 179.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9192 3.6055 0.0067 6 6 3.2997 3.6786 0.0014 7 6 3.9821 5.0223 0.0029 8 6 4.3204 5.4155 -1.4120 9 8 4.0350 4.6775 -2.3311 10 7 4.9391 6.5878 -1.6560 11 6 5.2674 6.9702 -3.0316 12 6 4.1178 7.7421 -3.6264 13 1 3.2311 7.9286 -3.0386 14 6 4.1979 8.2100 -4.9208 15 7 5.2779 7.9832 -5.6363 16 14 2.7733 9.1673 -5.6578 17 1 1.6850 9.2861 -4.6544 18 1 3.2371 10.5229 -6.0483 19 1 2.2648 8.4537 -6.8566 20 6 5.2833 7.4794 -0.5459 21 6 6.6846 7.1393 -0.0342 22 6 7.0307 8.0357 1.0810 23 7 7.2977 8.7260 1.9427 24 6 4.0564 2.5189 0.0004 25 9 5.4053 2.5924 0.0004 26 6 3.4307 1.2844 0.0000 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2124 2.3195 0.0005 31 1 1.3310 4.5113 0.0120 32 1 4.8971 4.9645 0.5926 33 1 3.3161 5.7675 0.4378 34 1 6.1619 7.5930 -3.0319 35 1 5.4486 6.0738 -3.6246 36 1 5.3344 8.3127 -6.5469 37 1 5.2633 8.5133 -0.8906 38 1 4.5611 7.3512 0.2604 39 1 6.7046 6.1055 0.3105 40 1 7.4068 7.2676 -0.8405 41 1 4.0203 0.3796 -0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352490976.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:03 Heat of formation + Delta-G solvation = -87.075558 kcal Electronic energy + Delta-G solvation = -26329.421718 eV Core-core repulsion = 22316.695329 eV Total energy + Delta-G solvation = -4012.726389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.132 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.92624 -41.21603 -40.58412 -38.37485 -37.89234 -36.62117 -34.88202 -33.33063 -32.12166 -31.68535 -29.71271 -28.56034 -27.31650 -25.28769 -24.62480 -23.84353 -22.45939 -19.95353 -19.42730 -18.79766 -18.31514 -17.99808 -17.90436 -17.22836 -16.98071 -16.79104 -16.46501 -16.29925 -16.01120 -15.81332 -15.61554 -15.43422 -14.78364 -14.61872 -14.37238 -14.25009 -13.84532 -13.62590 -13.51429 -13.33946 -13.25216 -13.22713 -12.95740 -12.72127 -12.68335 -12.61011 -12.41177 -12.15194 -11.91970 -11.84313 -11.77976 -11.61446 -10.57741 -10.57570 -9.85196 -9.44184 -9.14556 -8.15876 -6.28229 0.16596 0.26968 1.40727 1.43054 1.53600 1.70878 1.85925 1.94961 2.20310 2.29505 2.45383 2.64542 3.14808 3.19935 3.42161 3.67986 3.74374 3.93087 3.97437 4.14501 4.15649 4.24100 4.31695 4.44032 4.44835 4.51550 4.64052 4.67057 4.78266 4.86362 4.98446 5.04181 5.09100 5.16825 5.24773 5.36813 5.38823 5.64272 5.71820 5.90899 6.15293 6.36122 6.62185 6.77565 6.84851 7.36935 7.56051 8.91174 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.009654 B = 0.004027 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.544794 B = 6951.440402 C = 9001.267291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.146 3.854 4 C -0.213 4.213 5 C -0.044 4.044 6 C -0.145 4.145 7 C -0.092 4.092 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.598 5.598 11 C 0.260 3.740 12 C -0.536 4.536 13 H 0.057 0.943 14 C 0.009 3.991 15 N -0.928 5.928 16 Si 0.959 3.041 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.287 1.287 20 C 0.113 3.887 21 C -0.041 4.041 22 C 0.247 3.753 23 N -0.488 5.488 24 C 0.133 3.867 25 F -0.140 7.140 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.032 0.968 35 H 0.000 1.000 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.178 -11.009 15.823 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.100 3.900 4 C -0.232 4.232 5 C -0.062 4.062 6 C -0.146 4.146 7 C -0.131 4.131 8 C 0.293 3.707 9 O -0.464 6.464 10 N -0.329 5.329 11 C 0.138 3.862 12 C -0.575 4.575 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.568 5.568 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.213 1.213 20 C -0.012 4.012 21 C -0.082 4.082 22 C -0.070 4.070 23 N -0.166 5.166 24 C 0.114 3.886 25 F -0.118 7.118 26 C -0.225 4.225 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.050 0.950 35 H 0.018 0.982 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.714 -10.511 16.457 20.995 hybrid contribution -0.255 0.301 -1.467 1.519 sum -7.969 -10.210 14.989 19.810 Atomic orbital electron populations 1.23426 0.75890 1.05854 1.02634 1.86040 1.23891 1.26183 1.88291 1.18698 0.91250 0.85273 0.94748 1.21539 1.01750 0.91268 1.08634 1.21014 0.92446 0.98882 0.93855 1.19492 0.94730 0.93350 1.07050 1.20723 1.04083 0.95023 0.93315 1.21121 0.77158 0.80669 0.91720 1.90682 1.54355 1.52937 1.48400 1.48082 1.57825 1.18829 1.08161 1.18786 0.95294 0.94061 0.78009 1.21796 1.02924 1.34162 0.98643 0.92451 1.25757 0.98409 0.97385 0.97459 1.70046 1.29206 1.47301 1.10279 0.85488 0.79540 0.78275 0.78237 1.18841 1.20008 1.21285 1.21560 0.94774 0.95318 0.89526 1.19846 0.99407 0.97516 0.91394 1.29095 0.91897 0.92766 0.93253 1.81246 1.10409 1.11697 1.13275 1.17281 0.76681 0.93904 1.00778 1.91459 1.29508 1.97172 1.93706 1.20308 0.93439 0.97408 1.11374 0.90832 0.91886 0.86090 0.82065 0.82604 0.85700 0.84416 0.94955 0.98226 0.92679 0.89614 0.86963 0.84935 0.86424 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.84 10.50 -92.33 -0.97 -7.81 16 3 C 0.15 3.44 6.69 22.50 0.15 3.59 16 4 C -0.21 -4.37 9.04 22.37 0.20 -4.17 16 5 C -0.04 -0.99 9.67 22.25 0.22 -0.77 16 6 C -0.14 -3.80 4.38 -19.80 -0.09 -3.89 16 7 C -0.09 -2.18 4.15 29.10 0.12 -2.06 16 8 C 0.50 18.26 7.67 87.66 0.67 18.93 16 9 O -0.58 -28.06 15.61 -3.03 -0.05 -28.11 16 10 N -0.60 -21.39 2.46 -826.16 -2.03 -23.42 16 11 C 0.26 12.62 5.16 85.64 0.44 13.06 16 12 C -0.54 -28.77 9.39 25.60 0.24 -28.53 16 13 H 0.06 3.02 7.81 -2.91 -0.02 2.99 16 14 C 0.01 0.48 5.46 84.65 0.46 0.94 16 15 N -0.93 -54.16 13.29 21.45 0.28 -53.88 16 16 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 C 0.11 2.69 5.17 86.38 0.45 3.13 16 21 C -0.04 -0.76 6.03 28.79 0.17 -0.59 16 22 C 0.25 5.42 15.43 89.44 1.38 6.80 16 23 N -0.49 -13.54 18.54 20.01 0.37 -13.17 16 24 C 0.13 3.78 7.24 22.36 0.16 3.94 16 25 F -0.14 -4.15 16.56 44.97 0.74 -3.41 16 26 C -0.21 -5.42 9.97 22.41 0.22 -5.20 16 27 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 28 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.16 2.24 6.30 -2.91 -0.02 2.22 16 31 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 32 H 0.13 2.27 6.83 -2.39 -0.02 2.25 16 33 H 0.14 2.28 7.31 -2.39 -0.02 2.26 16 34 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 35 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 37 H 0.09 2.24 8.07 -2.38 -0.02 2.22 16 38 H 0.11 1.89 6.44 -2.39 -0.02 1.88 16 39 H 0.13 1.91 7.22 -2.39 -0.02 1.90 16 40 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -78.00 364.56 7.36 -70.64 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.06 Total: 7.29 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.92 Total: 6.50 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -1.37 Total: -90.47 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.02 Total: -35.92 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.74 Total: -3.41 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -78.00 7.36 -70.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352490976.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.435 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds