Wall clock time and date at job start Tue Mar 31 2020 12:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46855 * 2 1 4 4 C 1.50693 * 109.47228 * 119.99761 * 2 1 3 5 5 O 1.21280 * 119.99942 * 120.00361 * 4 2 1 6 6 N 1.34773 * 120.00319 * 300.27521 * 4 2 1 7 7 C 1.39241 * 120.00536 * 175.43042 * 6 4 2 8 8 C 1.39473 * 119.83384 * 215.02130 * 7 6 4 9 9 C 1.36380 * 120.16446 * 179.71416 * 8 7 6 10 10 C 1.40874 * 119.82892 * 0.58187 * 9 8 7 11 11 C 1.41153 * 120.16314 * 179.67485 * 10 9 8 12 12 H 1.07997 * 119.99702 * 214.79482 * 11 10 9 13 13 C 1.39908 * 119.99888 * 34.79544 * 11 10 9 14 14 N 1.30865 * 120.00091 * 355.56986 * 13 11 10 15 15 Si 1.86804 * 119.99594 * 175.57254 * 13 11 10 16 16 H 1.48497 * 109.47293 * 59.99860 * 15 13 11 17 17 H 1.48501 * 109.46882 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46897 * 299.99834 * 15 13 11 19 19 C 1.40866 * 119.67036 * 359.69335 * 10 9 8 20 20 C 1.36376 * 119.82947 * 0.02562 * 19 10 9 21 21 C 1.50699 * 109.46751 * 240.00198 * 2 1 3 22 22 C 1.38380 * 119.92164 * 299.71554 * 21 2 1 23 23 C 1.38350 * 120.30473 * 179.76924 * 22 21 2 24 24 C 1.37968 * 120.14850 * 0.51440 * 23 22 21 25 25 C 1.39620 * 119.84641 * 359.74626 * 24 23 22 26 26 C 1.43202 * 120.14771 * 179.97438 * 25 24 23 27 27 N 5.95832 * 122.91370 * 276.20496 * 2 1 3 28 28 C 1.37925 * 119.92240 * 120.00281 * 21 2 1 29 29 H 1.09005 * 109.46931 * 299.99750 * 1 2 3 30 30 H 1.08993 * 109.47373 * 60.00012 * 1 2 3 31 31 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 32 32 H 0.97008 * 119.99785 * 355.43005 * 6 4 2 33 33 H 1.07995 * 119.92016 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.08405 * 180.25568 * 9 8 7 35 35 H 0.97003 * 119.99530 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.08362 * 179.97438 * 19 10 9 37 37 H 1.08001 * 119.91652 * 179.97438 * 20 19 10 38 38 H 1.08003 * 119.85100 * 0.02562 * 22 21 2 39 39 H 1.07999 * 119.92595 * 180.26037 * 23 22 21 40 40 H 1.07998 * 120.07602 * 179.72354 * 24 23 22 41 41 H 1.07993 * 120.07971 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7023 -0.2531 2.4545 7 6 2.0862 -0.9624 3.5896 8 6 1.2468 -0.9971 4.7029 9 6 1.6135 -1.6945 5.8161 10 6 2.8490 -2.3707 5.8440 11 6 3.2386 -3.0889 6.9950 12 1 4.2790 -3.1248 7.2826 13 6 2.2770 -3.7542 7.7632 14 7 1.0079 -3.6398 7.4653 15 14 2.8049 -4.8059 9.2140 16 1 3.5302 -3.9632 10.1983 17 1 1.6053 -5.3988 9.8579 18 1 3.6988 -5.8922 8.7386 19 6 3.6939 -2.3261 4.7177 20 6 3.3110 -1.6294 3.6096 21 6 2.0323 -0.7104 -1.2305 22 6 1.7018 -2.0369 -1.4449 23 6 2.1546 -2.6954 -2.5743 24 6 2.9484 -2.0355 -3.4897 25 6 3.2901 -0.6986 -3.2769 26 6 4.1141 -0.0076 -4.2225 27 7 4.7676 0.5406 -4.9726 28 6 2.8252 -0.0386 -2.1373 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1972 0.5702 2.5448 33 1 0.3023 -0.4739 4.6820 34 1 0.9607 -1.7239 6.6760 35 1 0.3413 -4.1014 7.9978 36 1 4.6427 -2.8417 4.7320 37 1 3.9578 -1.5939 2.7455 38 1 1.0841 -2.5595 -0.7295 39 1 1.8895 -3.7295 -2.7376 40 1 3.3049 -2.5520 -4.3686 41 1 3.0858 0.9955 -1.9666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359894565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:08 Heat of formation + Delta-G solvation = 35.350891 kcal Electronic energy + Delta-G solvation = -24722.142703 eV Core-core repulsion = 21145.494349 eV Total energy + Delta-G solvation = -3576.648355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.48128 -39.21029 -37.38725 -36.60670 -34.48983 -34.31950 -32.88052 -31.48573 -30.01601 -29.55592 -28.72042 -25.49259 -24.60765 -23.88116 -22.44652 -21.43531 -20.78776 -19.73022 -18.36537 -17.38082 -16.83020 -16.58263 -16.36080 -15.66305 -15.21401 -14.83587 -14.59734 -14.27534 -14.06660 -13.88361 -13.68970 -13.31960 -13.10880 -12.95733 -12.79080 -12.73414 -12.39258 -12.18124 -12.06534 -11.84981 -11.76100 -11.45090 -11.38618 -11.15048 -11.11167 -11.01048 -10.74190 -10.04254 -9.52030 -9.46074 -9.24848 -9.07590 -8.96866 -8.86780 -7.57648 -6.89454 -6.64310 -4.36844 0.61185 1.08131 2.44087 2.51374 2.75306 2.99911 3.06259 3.07891 3.10444 3.28355 3.52015 3.67307 3.83674 3.96262 4.31879 4.58456 4.67193 4.77547 4.90948 4.93840 5.07061 5.10557 5.25369 5.46128 5.54980 5.61535 5.63761 5.72593 5.90548 6.02632 6.15481 6.15997 6.33222 6.41891 6.59783 6.72161 6.88768 7.04296 7.17985 7.25830 7.27032 7.61027 7.71316 7.83703 8.03590 8.22539 8.29009 8.59227 8.70292 8.90329 8.97237 10.26667 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.002432 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.166498 B =11511.607856 C =11834.244051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 H 0.104 0.896 4 C 0.502 3.498 5 O -0.522 6.522 6 N -0.649 5.649 7 C 0.003 3.997 8 C -0.120 4.120 9 C -0.142 4.142 10 C 0.100 3.900 11 C -0.461 4.461 12 H 0.075 0.925 13 C 0.070 3.930 14 N -0.812 5.812 15 Si 0.915 3.085 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.206 4.206 20 C -0.085 4.085 21 C -0.064 4.064 22 C -0.049 4.049 23 C -0.121 4.121 24 C -0.070 4.070 25 C -0.039 4.039 26 C 0.261 3.739 27 N -0.427 5.427 28 C -0.062 4.062 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.395 0.605 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.278 0.722 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.616 5.640 -14.319 16.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 H 0.122 0.878 4 C 0.288 3.712 5 O -0.398 6.398 6 N -0.292 5.292 7 C -0.089 4.089 8 C -0.141 4.141 9 C -0.162 4.162 10 C 0.098 3.902 11 C -0.492 4.492 12 H 0.093 0.907 13 C -0.145 4.145 14 N -0.439 5.439 15 Si 0.740 3.260 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.226 4.226 20 C -0.104 4.104 21 C -0.064 4.064 22 C -0.067 4.067 23 C -0.139 4.139 24 C -0.091 4.091 25 C -0.042 4.042 26 C -0.054 4.054 27 N -0.102 5.102 28 C -0.083 4.083 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.229 0.771 33 H 0.109 0.891 34 H 0.149 0.851 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.343 5.695 -15.493 16.841 hybrid contribution -0.341 -0.401 1.031 1.158 sum -3.684 5.294 -14.462 15.835 Atomic orbital electron populations 1.21809 0.91791 1.03377 1.02907 1.20316 0.97880 1.00271 0.90968 0.87785 1.20307 0.81601 0.85084 0.84237 1.90715 1.36743 1.26154 1.86167 1.42968 1.55627 1.25833 1.04744 1.17250 0.96600 1.07439 0.87640 1.20306 0.97075 1.02226 0.94446 1.21194 0.99367 0.97744 0.97882 1.17724 0.91592 0.89161 0.91767 1.19470 0.94851 1.27434 1.07408 0.90661 1.25875 0.94511 0.96444 0.97707 1.69748 1.01162 1.36333 1.36655 0.86251 0.78805 0.80247 0.80657 1.19052 1.20432 1.19094 1.20813 1.01764 1.06203 0.93830 1.20391 0.94152 0.98278 0.97628 1.19227 0.97974 0.94471 0.94752 1.21268 0.96510 0.93376 0.95584 1.21083 0.98288 1.00412 0.94146 1.21149 0.96381 0.92197 0.99349 1.15875 1.00831 0.93754 0.93754 1.25749 0.93188 0.93377 0.93136 1.81245 1.10123 1.08671 1.10150 1.20985 0.95389 0.99861 0.92057 0.91410 0.91267 0.91591 0.77124 0.89113 0.85056 0.91090 0.88649 0.87484 0.85183 0.84856 0.85194 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.91 37.16 0.33 -0.78 16 2 C -0.07 -0.72 2.90 -92.93 -0.27 -0.99 16 3 H 0.10 0.80 7.87 -51.93 -0.41 0.39 16 4 C 0.50 7.57 6.85 -10.99 -0.08 7.50 16 5 O -0.52 -10.02 12.50 5.56 0.07 -9.95 16 6 N -0.65 -10.18 5.16 -9.74 -0.05 -10.23 16 7 C 0.00 0.06 6.30 -83.57 -0.53 -0.47 16 8 C -0.12 -2.61 9.90 -39.79 -0.39 -3.00 16 9 C -0.14 -3.54 8.62 -39.25 -0.34 -3.88 16 10 C 0.10 2.62 5.55 -106.80 -0.59 2.03 16 11 C -0.46 -12.09 9.02 -37.85 -0.34 -12.44 16 12 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 13 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 14 N -0.81 -20.70 10.60 55.55 0.59 -20.11 16 15 Si 0.92 18.73 29.56 -169.99 -5.03 13.70 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 C -0.21 -5.10 9.74 -39.26 -0.38 -5.48 16 20 C -0.08 -1.95 8.61 -39.79 -0.34 -2.29 16 21 C -0.06 -0.66 4.40 -104.68 -0.46 -1.12 16 22 C -0.05 -0.51 7.91 -39.49 -0.31 -0.83 16 23 C -0.12 -1.08 10.03 -39.64 -0.40 -1.47 16 24 C -0.07 -0.60 9.76 -39.16 -0.38 -0.98 16 25 C -0.04 -0.37 5.73 -106.93 -0.61 -0.98 16 26 C 0.26 2.86 15.33 -22.47 -0.34 2.52 16 27 N -0.43 -5.59 18.54 41.84 0.78 -4.81 16 28 C -0.06 -0.59 9.38 -39.17 -0.37 -0.95 16 29 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.58 7.40 -51.93 -0.38 0.19 16 32 H 0.40 4.71 8.36 -40.82 -0.34 4.37 16 33 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 34 H 0.13 3.39 6.13 -52.49 -0.32 3.07 16 35 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 36 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 37 H 0.11 2.44 6.22 -52.49 -0.33 2.11 16 38 H 0.13 1.44 7.50 -52.48 -0.39 1.05 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.13 0.99 7.94 -52.49 -0.42 0.58 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.80 357.63 -8.81 -39.61 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.65 Total: 8.38 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -5.90 Total: -21.98 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 1.31 Total: -35.15 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.07 Total: -9.95 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.80 -8.81 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359894565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.961 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds