Wall clock time and date at job start Tue Mar 31 2020 12:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46855 * 2 1 4 4 C 1.50693 * 109.47228 * 119.99761 * 2 1 3 5 5 O 1.21280 * 119.99942 * 120.00361 * 4 2 1 6 6 N 1.34773 * 120.00319 * 300.27521 * 4 2 1 7 7 C 1.39241 * 120.00536 * 175.43042 * 6 4 2 8 8 C 1.39473 * 119.83384 * 215.02130 * 7 6 4 9 9 C 1.36380 * 120.16446 * 179.71416 * 8 7 6 10 10 C 1.40874 * 119.82892 * 0.58187 * 9 8 7 11 11 C 1.41153 * 120.16314 * 179.67485 * 10 9 8 12 12 H 1.07997 * 119.99702 * 214.79482 * 11 10 9 13 13 C 1.39908 * 119.99888 * 34.79544 * 11 10 9 14 14 N 1.30865 * 120.00091 * 355.56986 * 13 11 10 15 15 Si 1.86804 * 119.99594 * 175.57254 * 13 11 10 16 16 H 1.48497 * 109.47293 * 59.99860 * 15 13 11 17 17 H 1.48501 * 109.46882 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46897 * 299.99834 * 15 13 11 19 19 C 1.40866 * 119.67036 * 359.69335 * 10 9 8 20 20 C 1.36376 * 119.82947 * 0.02562 * 19 10 9 21 21 C 1.50699 * 109.46751 * 240.00198 * 2 1 3 22 22 C 1.38380 * 119.92164 * 299.71554 * 21 2 1 23 23 C 1.38350 * 120.30473 * 179.76924 * 22 21 2 24 24 C 1.37968 * 120.14850 * 0.51440 * 23 22 21 25 25 C 1.39620 * 119.84641 * 359.74626 * 24 23 22 26 26 C 1.43202 * 120.14771 * 179.97438 * 25 24 23 27 27 N 5.95832 * 122.91370 * 276.20496 * 2 1 3 28 28 C 1.37925 * 119.92240 * 120.00281 * 21 2 1 29 29 H 1.09005 * 109.46931 * 299.99750 * 1 2 3 30 30 H 1.08993 * 109.47373 * 60.00012 * 1 2 3 31 31 H 1.09002 * 109.46826 * 180.02562 * 1 2 3 32 32 H 0.97008 * 119.99785 * 355.43005 * 6 4 2 33 33 H 1.07995 * 119.92016 * 359.97438 * 8 7 6 34 34 H 1.08001 * 120.08405 * 180.25568 * 9 8 7 35 35 H 0.97003 * 119.99530 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.08362 * 179.97438 * 19 10 9 37 37 H 1.08001 * 119.91652 * 179.97438 * 20 19 10 38 38 H 1.08003 * 119.85100 * 0.02562 * 22 21 2 39 39 H 1.07999 * 119.92595 * 180.26037 * 23 22 21 40 40 H 1.07998 * 120.07602 * 179.72354 * 24 23 22 41 41 H 1.07993 * 120.07971 * 359.97438 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7023 -0.2531 2.4545 7 6 2.0862 -0.9624 3.5896 8 6 1.2468 -0.9971 4.7029 9 6 1.6135 -1.6945 5.8161 10 6 2.8490 -2.3707 5.8440 11 6 3.2386 -3.0889 6.9950 12 1 4.2790 -3.1248 7.2826 13 6 2.2770 -3.7542 7.7632 14 7 1.0079 -3.6398 7.4653 15 14 2.8049 -4.8059 9.2140 16 1 3.5302 -3.9632 10.1983 17 1 1.6053 -5.3988 9.8579 18 1 3.6988 -5.8922 8.7386 19 6 3.6939 -2.3261 4.7177 20 6 3.3110 -1.6294 3.6096 21 6 2.0323 -0.7104 -1.2305 22 6 1.7018 -2.0369 -1.4449 23 6 2.1546 -2.6954 -2.5743 24 6 2.9484 -2.0355 -3.4897 25 6 3.2901 -0.6986 -3.2769 26 6 4.1141 -0.0076 -4.2225 27 7 4.7676 0.5406 -4.9726 28 6 2.8252 -0.0386 -2.1373 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.1972 0.5702 2.5448 33 1 0.3023 -0.4739 4.6820 34 1 0.9607 -1.7239 6.6760 35 1 0.3413 -4.1014 7.9978 36 1 4.6427 -2.8417 4.7320 37 1 3.9578 -1.5939 2.7455 38 1 1.0841 -2.5595 -0.7295 39 1 1.8895 -3.7295 -2.7376 40 1 3.3049 -2.5520 -4.3686 41 1 3.0858 0.9955 -1.9666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359894565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:07 Heat of formation + Delta-G solvation = 19.682379 kcal Electronic energy + Delta-G solvation = -24722.822141 eV Core-core repulsion = 21145.494349 eV Total energy + Delta-G solvation = -3577.327792 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57215 -40.28390 -38.99024 -37.56235 -36.10462 -35.26346 -34.50438 -32.22794 -31.47083 -31.02118 -30.16786 -26.99157 -25.61956 -24.74217 -23.62100 -22.97441 -22.28104 -21.05021 -19.39403 -19.19773 -18.01960 -17.80824 -17.23662 -16.99254 -16.58207 -15.95824 -15.66944 -15.60621 -15.21313 -15.01601 -14.75226 -14.45096 -14.36831 -14.14035 -14.01016 -13.89247 -13.65433 -13.49936 -13.20268 -13.06976 -12.94589 -12.83157 -12.72164 -12.55279 -12.44622 -12.16805 -11.83275 -11.74172 -11.35789 -11.16924 -10.70605 -10.45519 -9.86666 -9.74154 -9.42650 -8.68353 -8.48239 -6.30568 -0.15504 0.37034 0.84344 1.17412 1.40322 1.48023 1.51823 1.58545 1.85927 1.92525 2.25046 2.42299 2.82759 2.85232 2.95814 3.54318 3.69978 3.87317 4.00198 4.15561 4.24833 4.31576 4.34222 4.44151 4.57094 4.57843 4.79747 4.91722 4.97139 4.98820 5.05417 5.17445 5.18934 5.29264 5.34007 5.39007 5.43757 5.48154 5.59730 5.72937 5.87914 5.95656 6.06485 6.17633 6.41981 6.43094 6.70618 6.80241 6.99337 7.03458 7.47306 8.43937 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.024254 B = 0.002432 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.166498 B =11511.607856 C =11834.244051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.059 4.059 3 H 0.137 0.863 4 C 0.501 3.499 5 O -0.564 6.564 6 N -0.644 5.644 7 C 0.027 3.973 8 C -0.119 4.119 9 C -0.160 4.160 10 C 0.065 3.935 11 C -0.500 4.500 12 H 0.070 0.930 13 C 0.028 3.972 14 N -0.841 5.841 15 Si 0.986 3.014 16 H -0.259 1.259 17 H -0.268 1.268 18 H -0.266 1.266 19 C -0.222 4.222 20 C -0.096 4.096 21 C -0.078 4.078 22 C -0.063 4.063 23 C -0.124 4.124 24 C -0.064 4.064 25 C -0.048 4.048 26 C 0.283 3.717 27 N -0.467 5.467 28 C -0.058 4.058 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.418 0.582 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.284 0.716 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 6.616 -15.532 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 H 0.155 0.845 4 C 0.290 3.710 5 O -0.442 6.442 6 N -0.289 5.289 7 C -0.066 4.066 8 C -0.139 4.139 9 C -0.180 4.180 10 C 0.063 3.937 11 C -0.531 4.531 12 H 0.088 0.912 13 C -0.184 4.184 14 N -0.468 5.468 15 Si 0.807 3.193 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.191 1.191 19 C -0.242 4.242 20 C -0.116 4.116 21 C -0.078 4.078 22 C -0.082 4.082 23 C -0.142 4.142 24 C -0.084 4.084 25 C -0.051 4.051 26 C -0.031 4.031 27 N -0.143 5.143 28 C -0.079 4.079 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.255 0.745 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.494 6.718 -16.735 18.585 hybrid contribution -0.021 -0.654 1.214 1.379 sum -4.515 6.064 -15.521 17.264 Atomic orbital electron populations 1.21850 0.89947 1.03174 1.04730 1.20324 0.99182 1.00892 0.87608 0.84534 1.21292 0.80093 0.84507 0.85128 1.90704 1.38504 1.28197 1.86829 1.42922 1.55915 1.26433 1.03604 1.17287 0.95070 1.05423 0.88860 1.20570 0.98335 1.01436 0.93536 1.21178 0.99058 0.98926 0.98816 1.18024 0.92776 0.90395 0.92492 1.19680 0.95136 1.29399 1.08842 0.91184 1.26692 0.94356 0.97179 1.00132 1.69812 1.02000 1.37199 1.37837 0.85196 0.78643 0.78306 0.77174 1.18346 1.19198 1.19120 1.20926 1.01812 1.07072 0.94430 1.20501 0.95312 0.98855 0.96979 1.19307 0.98742 0.94559 0.95236 1.21366 0.96875 0.93898 0.96040 1.21299 0.97988 1.01305 0.93601 1.21396 0.95424 0.91820 0.99746 1.15961 1.01165 0.94207 0.93789 1.25861 0.92361 0.92440 0.92448 1.81272 1.11582 1.09978 1.11489 1.21160 0.94460 1.00757 0.91504 0.90219 0.88845 0.92861 0.74467 0.85586 0.86462 0.90514 0.88998 0.87384 0.86395 0.83048 0.83131 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.91 71.98 0.64 -1.07 16 2 C -0.06 -0.98 2.90 -12.29 -0.04 -1.01 16 3 H 0.14 1.44 7.87 -2.39 -0.02 1.42 16 4 C 0.50 14.07 6.85 87.66 0.60 14.67 16 5 O -0.56 -21.22 12.50 -3.03 -0.04 -21.25 16 6 N -0.64 -18.58 5.16 -303.13 -1.56 -20.15 16 7 C 0.03 1.11 6.30 38.56 0.24 1.35 16 8 C -0.12 -5.04 9.90 22.13 0.22 -4.83 16 9 C -0.16 -8.13 8.62 22.48 0.19 -7.94 16 10 C 0.07 3.57 5.55 -21.28 -0.12 3.45 16 11 C -0.50 -27.37 9.02 23.39 0.21 -27.16 16 12 H 0.07 3.72 7.85 -2.91 -0.02 3.70 16 13 C 0.03 1.44 5.42 85.24 0.46 1.90 16 14 N -0.84 -43.87 10.60 21.82 0.23 -43.64 16 15 Si 0.99 38.96 29.56 68.60 2.03 40.99 16 16 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 17 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 18 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 19 C -0.22 -11.43 9.74 22.48 0.22 -11.21 16 20 C -0.10 -4.48 8.61 22.14 0.19 -4.29 16 21 C -0.08 -1.42 4.40 -19.91 -0.09 -1.50 16 22 C -0.06 -1.23 7.91 22.33 0.18 -1.06 16 23 C -0.12 -1.97 10.03 22.23 0.22 -1.75 16 24 C -0.06 -0.94 9.76 22.54 0.22 -0.72 16 25 C -0.05 -0.81 5.73 -21.36 -0.12 -0.93 16 26 C 0.28 5.74 15.33 88.33 1.35 7.09 16 27 N -0.47 -11.72 18.54 19.00 0.35 -11.37 16 28 C -0.06 -0.94 9.38 22.54 0.21 -0.72 16 29 H 0.08 0.80 7.66 -2.38 -0.02 0.78 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.81 7.40 -2.39 -0.02 0.79 16 32 H 0.42 8.41 8.36 -92.70 -0.78 7.63 16 33 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 34 H 0.12 6.25 6.13 -2.91 -0.02 6.23 16 35 H 0.28 13.50 8.30 -92.71 -0.77 12.73 16 36 H 0.09 4.60 8.06 -2.91 -0.02 4.57 16 37 H 0.11 4.97 6.22 -2.91 -0.02 4.95 16 38 H 0.12 2.56 7.50 -2.91 -0.02 2.54 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 40 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.15 1.75 7.94 -2.91 -0.02 1.73 16 Total: -1.00 -69.96 357.63 6.12 -63.84 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.30 Total: 27.30 kcal Atomic # 6 Polarization: -40.52 SS G_CDS: 4.80 Total: -35.72 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -0.98 Total: -75.16 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.25 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -69.96 6.12 -63.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359894565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.522 kcal (2) G-P(sol) polarization free energy of solvation -69.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds