Wall clock time and date at job start Tue Mar 31 2020 12:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.50701 * 109.47257 * 239.99946 * 2 1 3 5 5 O 1.21280 * 120.00244 * 240.00486 * 4 2 1 6 6 N 1.34778 * 119.99965 * 59.99925 * 4 2 1 7 7 C 1.39232 * 119.99909 * 185.18196 * 6 4 2 8 8 C 1.39477 * 119.83814 * 324.05660 * 7 6 4 9 9 C 1.36376 * 120.17259 * 180.29842 * 8 7 6 10 10 C 1.40867 * 119.82638 * 359.47808 * 9 8 7 11 11 C 1.41157 * 120.16424 * 180.24655 * 10 9 8 12 12 H 1.08000 * 120.00260 * 205.05322 * 11 10 9 13 13 C 1.39910 * 119.99605 * 25.06232 * 11 10 9 14 14 N 1.30865 * 120.00144 * 17.78948 * 13 11 10 15 15 Si 1.86803 * 119.99810 * 197.79493 * 13 11 10 16 16 H 1.48498 * 109.47211 * 94.97789 * 15 13 11 17 17 H 1.48499 * 109.47136 * 214.98188 * 15 13 11 18 18 H 1.48508 * 109.46883 * 334.98009 * 15 13 11 19 19 C 1.40870 * 119.67447 * 0.52168 * 10 9 8 20 20 C 1.36375 * 119.82231 * 359.72865 * 19 10 9 21 21 C 1.50700 * 109.46833 * 120.00042 * 2 1 3 22 22 C 1.38385 * 119.92649 * 60.00289 * 21 2 1 23 23 C 1.38335 * 120.30586 * 179.97438 * 22 21 2 24 24 C 1.37970 * 120.15498 * 359.96822 * 23 22 21 25 25 C 1.39615 * 119.84059 * 0.03181 * 24 23 22 26 26 C 1.43201 * 120.14829 * 180.02562 * 25 24 23 27 27 N 5.95826 * 122.93139 * 83.79996 * 2 1 3 28 28 C 1.37923 * 119.92022 * 239.72058 * 21 2 1 29 29 H 1.09001 * 109.46749 * 60.00030 * 1 2 3 30 30 H 1.08997 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47179 * 300.00206 * 1 2 3 32 32 H 0.97001 * 119.99947 * 5.18169 * 6 4 2 33 33 H 1.08004 * 119.91126 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.08602 * 179.70407 * 9 8 7 35 35 H 0.97005 * 120.00200 * 180.02562 * 14 13 11 36 36 H 1.07997 * 120.09126 * 179.71345 * 19 10 9 37 37 H 1.08006 * 119.90956 * 180.02562 * 20 19 10 38 38 H 1.08005 * 119.84446 * 359.97438 * 22 21 2 39 39 H 1.08005 * 119.92475 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.07948 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.08296 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.0794 -0.9656 -3.5893 8 6 3.3009 -1.6385 -3.6154 9 6 3.6754 -2.3364 -4.7255 10 6 2.8201 -2.3857 -5.8437 11 6 3.1983 -3.1103 -6.9946 12 1 2.7897 -2.8449 -7.9584 13 6 4.1025 -4.1726 -6.8865 14 7 4.3308 -4.7216 -5.7208 15 14 4.9840 -4.8070 -8.4064 16 1 6.3122 -4.1523 -8.5178 17 1 5.1642 -6.2769 -8.2967 18 1 4.1761 -4.4960 -9.6131 19 6 1.5881 -1.7036 -5.8100 20 6 1.2296 -1.0056 -4.6946 21 6 2.0323 -0.7104 1.2305 22 6 1.6970 -2.0353 1.4479 23 6 2.1542 -2.6952 2.5745 24 6 2.9490 -2.0357 3.4893 25 6 3.2910 -0.6990 3.2762 26 6 4.1160 -0.0083 4.2212 27 7 4.7691 0.5401 4.9716 28 6 2.8299 -0.0403 2.1344 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2129 0.5799 -2.5450 33 1 3.9537 -1.6030 -2.7557 34 1 4.6236 -2.8530 -4.7459 35 1 4.9579 -5.4578 -5.6458 36 1 0.9293 -1.7330 -6.6653 37 1 0.2851 -0.4824 -4.6671 38 1 1.0756 -2.5565 0.7347 39 1 1.8891 -3.7294 2.7378 40 1 3.3055 -2.5522 4.3682 41 1 3.0942 0.9925 1.9615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359894566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:14 Heat of formation + Delta-G solvation = 34.668504 kcal Electronic energy + Delta-G solvation = -24808.995066 eV Core-core repulsion = 21232.317121 eV Total energy + Delta-G solvation = -3576.677945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.43463 -39.16364 -37.35982 -36.57796 -34.49866 -34.27963 -32.91932 -31.45337 -29.98820 -29.49039 -28.79971 -25.48028 -24.58892 -23.85058 -22.39126 -21.35756 -20.91333 -19.63670 -18.34522 -17.33686 -16.88557 -16.55671 -16.31685 -15.61480 -15.23432 -14.76512 -14.60139 -14.23556 -14.05828 -13.85676 -13.66408 -13.29185 -13.09945 -12.94002 -12.77357 -12.73278 -12.38356 -12.18684 -11.97001 -11.88001 -11.80150 -11.54243 -11.34621 -11.15269 -11.10875 -10.93674 -10.52911 -9.95910 -9.87211 -9.45997 -9.20827 -9.03240 -8.93172 -8.66674 -7.54546 -7.05038 -6.76421 -4.31593 0.64386 1.11590 2.46778 2.55995 2.78341 2.96889 3.06344 3.09183 3.10318 3.30300 3.55244 3.70420 3.87374 3.92142 4.34990 4.59737 4.63336 4.80654 4.93966 4.96465 5.10294 5.14454 5.28544 5.48527 5.57300 5.65158 5.68682 5.75844 5.92005 6.05756 6.12014 6.18920 6.36435 6.38766 6.63091 6.78528 6.97677 7.03128 7.13746 7.27336 7.28556 7.58031 7.65418 7.94819 8.03941 8.18657 8.29423 8.61182 8.74345 8.86524 8.98677 10.16614 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002686 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.567467 B =10422.806946 C =11270.482283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 H 0.103 0.897 4 C 0.501 3.499 5 O -0.519 6.519 6 N -0.649 5.649 7 C -0.010 4.010 8 C -0.084 4.084 9 C -0.159 4.159 10 C 0.107 3.893 11 C -0.459 4.459 12 H 0.078 0.922 13 C 0.075 3.925 14 N -0.787 5.787 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.217 4.217 20 C -0.103 4.103 21 C -0.064 4.064 22 C -0.048 4.048 23 C -0.121 4.121 24 C -0.070 4.070 25 C -0.039 4.039 26 C 0.261 3.739 27 N -0.427 5.427 28 C -0.063 4.063 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.394 0.606 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.134 0.866 40 H 0.130 0.870 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 6.561 12.439 15.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.094 4.094 3 H 0.121 0.879 4 C 0.286 3.714 5 O -0.395 6.395 6 N -0.292 5.292 7 C -0.102 4.102 8 C -0.104 4.104 9 C -0.178 4.178 10 C 0.104 3.896 11 C -0.488 4.488 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.412 5.412 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.186 1.186 19 C -0.237 4.237 20 C -0.123 4.123 21 C -0.064 4.064 22 C -0.067 4.067 23 C -0.139 4.139 24 C -0.091 4.091 25 C -0.042 4.042 26 C -0.054 4.054 27 N -0.102 5.102 28 C -0.083 4.083 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.580 6.492 13.816 16.252 hybrid contribution -0.054 -0.227 -1.041 1.067 sum -5.633 6.264 12.775 15.303 Atomic orbital electron populations 1.21799 0.91865 1.03327 1.02826 1.20317 0.97824 1.00250 0.91047 0.87850 1.20305 0.81705 0.85153 0.84223 1.90738 1.36456 1.26160 1.86102 1.42914 1.56560 1.24964 1.04751 1.17154 0.97407 1.08028 0.87654 1.20538 0.94203 0.97878 0.97774 1.20996 1.00711 1.02271 0.93871 1.17678 0.89670 0.89436 0.92819 1.19569 1.22000 1.12093 0.95181 0.90362 1.25941 0.95413 0.95777 0.97258 1.69859 1.27632 1.18369 1.25290 0.86306 0.80263 0.78154 0.82047 1.19325 1.20274 1.18565 1.20544 0.98026 1.07183 0.97967 1.20054 0.96735 1.01237 0.94248 1.19228 0.97920 0.94507 0.94754 1.21264 0.96557 0.93351 0.95550 1.21080 0.98245 1.00389 0.94185 1.21146 0.96394 0.92175 0.99360 1.15874 1.00847 0.93783 0.93740 1.25751 0.93173 0.93361 0.93126 1.81242 1.10147 1.08697 1.10160 1.20982 0.95415 0.99866 0.92045 0.91470 0.91614 0.91317 0.77301 0.87607 0.86371 0.90765 0.88694 0.89274 0.85185 0.84853 0.85198 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.91 37.16 0.33 -0.79 16 2 C -0.07 -0.74 2.90 -92.92 -0.27 -1.01 16 3 H 0.10 0.82 7.87 -51.93 -0.41 0.41 16 4 C 0.50 7.78 6.86 -10.98 -0.08 7.70 16 5 O -0.52 -10.39 12.54 5.56 0.07 -10.32 16 6 N -0.65 -10.32 5.15 -9.74 -0.05 -10.37 16 7 C -0.01 -0.22 6.30 -83.57 -0.53 -0.74 16 8 C -0.08 -2.02 8.61 -39.79 -0.34 -2.37 16 9 C -0.16 -4.16 8.63 -39.26 -0.34 -4.50 16 10 C 0.11 2.80 5.57 -106.80 -0.59 2.20 16 11 C -0.46 -11.98 9.03 -37.85 -0.34 -12.32 16 12 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 13 C 0.07 1.86 5.13 -17.34 -0.09 1.77 16 14 N -0.79 -20.44 10.98 55.55 0.61 -19.83 16 15 Si 0.91 18.48 29.60 -169.99 -5.03 13.45 16 16 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 17 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 19 C -0.22 -5.11 9.74 -39.26 -0.38 -5.50 16 20 C -0.10 -2.15 9.90 -39.79 -0.39 -2.54 16 21 C -0.06 -0.68 4.39 -104.68 -0.46 -1.14 16 22 C -0.05 -0.53 7.92 -39.49 -0.31 -0.85 16 23 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 24 C -0.07 -0.63 9.76 -39.17 -0.38 -1.01 16 25 C -0.04 -0.39 5.73 -106.93 -0.61 -1.00 16 26 C 0.26 2.96 15.33 -22.47 -0.34 2.62 16 27 N -0.43 -5.73 18.54 41.84 0.78 -4.96 16 28 C -0.06 -0.61 9.38 -39.17 -0.37 -0.98 16 29 H 0.07 0.48 7.69 -51.93 -0.40 0.08 16 30 H 0.06 0.58 7.38 -51.93 -0.38 0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.39 4.71 8.40 -40.82 -0.34 4.36 16 33 H 0.11 2.57 6.24 -52.48 -0.33 2.24 16 34 H 0.12 3.24 6.19 -52.49 -0.32 2.91 16 35 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 36 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.09 1.56 8.06 -52.48 -0.42 1.14 16 38 H 0.13 1.50 7.50 -52.48 -0.39 1.10 16 39 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 1.04 7.94 -52.49 -0.42 0.63 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -31.20 358.04 -8.79 -39.99 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.66 Total: 8.64 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -5.90 Total: -21.99 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 1.34 Total: -35.16 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.07 Total: -10.32 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.20 -8.79 -39.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359894566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.655 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds