Wall clock time and date at job start Tue Mar 31 2020 12:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47360 * 2 1 4 4 C 1.50701 * 109.47257 * 239.99946 * 2 1 3 5 5 O 1.21280 * 120.00244 * 240.00486 * 4 2 1 6 6 N 1.34778 * 119.99965 * 59.99925 * 4 2 1 7 7 C 1.39232 * 119.99909 * 185.18196 * 6 4 2 8 8 C 1.39477 * 119.83814 * 324.05660 * 7 6 4 9 9 C 1.36376 * 120.17259 * 180.29842 * 8 7 6 10 10 C 1.40867 * 119.82638 * 359.47808 * 9 8 7 11 11 C 1.41157 * 120.16424 * 180.24655 * 10 9 8 12 12 H 1.08000 * 120.00260 * 205.05322 * 11 10 9 13 13 C 1.39910 * 119.99605 * 25.06232 * 11 10 9 14 14 N 1.30865 * 120.00144 * 17.78948 * 13 11 10 15 15 Si 1.86803 * 119.99810 * 197.79493 * 13 11 10 16 16 H 1.48498 * 109.47211 * 94.97789 * 15 13 11 17 17 H 1.48499 * 109.47136 * 214.98188 * 15 13 11 18 18 H 1.48508 * 109.46883 * 334.98009 * 15 13 11 19 19 C 1.40870 * 119.67447 * 0.52168 * 10 9 8 20 20 C 1.36375 * 119.82231 * 359.72865 * 19 10 9 21 21 C 1.50700 * 109.46833 * 120.00042 * 2 1 3 22 22 C 1.38385 * 119.92649 * 60.00289 * 21 2 1 23 23 C 1.38335 * 120.30586 * 179.97438 * 22 21 2 24 24 C 1.37970 * 120.15498 * 359.96822 * 23 22 21 25 25 C 1.39615 * 119.84059 * 0.03181 * 24 23 22 26 26 C 1.43201 * 120.14829 * 180.02562 * 25 24 23 27 27 N 5.95826 * 122.93139 * 83.79996 * 2 1 3 28 28 C 1.37923 * 119.92022 * 239.72058 * 21 2 1 29 29 H 1.09001 * 109.46749 * 60.00030 * 1 2 3 30 30 H 1.08997 * 109.47278 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47179 * 300.00206 * 1 2 3 32 32 H 0.97001 * 119.99947 * 5.18169 * 6 4 2 33 33 H 1.08004 * 119.91126 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.08602 * 179.70407 * 9 8 7 35 35 H 0.97005 * 120.00200 * 180.02562 * 14 13 11 36 36 H 1.07997 * 120.09126 * 179.71345 * 19 10 9 37 37 H 1.08006 * 119.90956 * 180.02562 * 20 19 10 38 38 H 1.08005 * 119.84446 * 359.97438 * 22 21 2 39 39 H 1.08005 * 119.92475 * 180.02562 * 23 22 21 40 40 H 1.07997 * 120.07948 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.08296 * 0.02562 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 2.0794 -0.9656 -3.5893 8 6 3.3009 -1.6385 -3.6154 9 6 3.6754 -2.3364 -4.7255 10 6 2.8201 -2.3857 -5.8437 11 6 3.1983 -3.1103 -6.9946 12 1 2.7897 -2.8449 -7.9584 13 6 4.1025 -4.1726 -6.8865 14 7 4.3308 -4.7216 -5.7208 15 14 4.9840 -4.8070 -8.4064 16 1 6.3122 -4.1523 -8.5178 17 1 5.1642 -6.2769 -8.2967 18 1 4.1761 -4.4960 -9.6131 19 6 1.5881 -1.7036 -5.8100 20 6 1.2296 -1.0056 -4.6946 21 6 2.0323 -0.7104 1.2305 22 6 1.6970 -2.0353 1.4479 23 6 2.1542 -2.6952 2.5745 24 6 2.9490 -2.0357 3.4893 25 6 3.2910 -0.6990 3.2762 26 6 4.1160 -0.0083 4.2212 27 7 4.7691 0.5401 4.9716 28 6 2.8299 -0.0403 2.1344 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2129 0.5799 -2.5450 33 1 3.9537 -1.6030 -2.7557 34 1 4.6236 -2.8530 -4.7459 35 1 4.9579 -5.4578 -5.6458 36 1 0.9293 -1.7330 -6.6653 37 1 0.2851 -0.4824 -4.6671 38 1 1.0756 -2.5565 0.7347 39 1 1.8891 -3.7294 2.7378 40 1 3.3055 -2.5522 4.3682 41 1 3.0942 0.9925 1.9615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359894566.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:12 Heat of formation + Delta-G solvation = 18.304738 kcal Electronic energy + Delta-G solvation = -24809.704652 eV Core-core repulsion = 21232.317121 eV Total energy + Delta-G solvation = -3577.387531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.54837 -40.27345 -38.97562 -37.56682 -36.13964 -35.25227 -34.53764 -32.23447 -31.40580 -31.07980 -30.19875 -26.99056 -25.61647 -24.74101 -23.52316 -23.08216 -22.30565 -20.99682 -19.41546 -19.17997 -18.07893 -17.77449 -17.22872 -16.99044 -16.57887 -15.89894 -15.74851 -15.60512 -15.21974 -15.02765 -14.74163 -14.46741 -14.36106 -14.14908 -13.95614 -13.89876 -13.73822 -13.49857 -13.31599 -13.04886 -12.91840 -12.80153 -12.63744 -12.55509 -12.30949 -12.17261 -11.83165 -11.69731 -11.61821 -11.18459 -10.65630 -10.33502 -9.87065 -9.74421 -9.40964 -8.84058 -8.59661 -6.24441 -0.16201 0.36538 0.86884 1.18182 1.38491 1.46717 1.52762 1.57648 1.87500 1.91912 2.21384 2.44061 2.78230 2.84571 2.95632 3.54686 3.76042 3.88088 4.00860 4.15898 4.24725 4.32015 4.34196 4.48627 4.53534 4.56981 4.79495 4.92264 4.98994 5.02001 5.05898 5.13842 5.24250 5.28845 5.33960 5.34715 5.43488 5.49492 5.59220 5.72384 5.87210 5.92613 6.12946 6.15540 6.38495 6.41057 6.71885 6.82549 6.95482 7.04889 7.52159 8.34904 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002686 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.567467 B =10422.806946 C =11270.482283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.059 4.059 3 H 0.136 0.864 4 C 0.499 3.501 5 O -0.567 6.567 6 N -0.642 5.642 7 C 0.011 3.989 8 C -0.099 4.099 9 C -0.184 4.184 10 C 0.072 3.928 11 C -0.495 4.495 12 H 0.080 0.920 13 C 0.031 3.969 14 N -0.828 5.828 15 Si 0.982 3.018 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.254 1.254 19 C -0.225 4.225 20 C -0.098 4.098 21 C -0.078 4.078 22 C -0.063 4.063 23 C -0.125 4.125 24 C -0.064 4.064 25 C -0.048 4.048 26 C 0.283 3.717 27 N -0.467 5.467 28 C -0.059 4.059 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.418 0.582 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.286 0.714 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 8.094 13.056 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.080 4.080 3 H 0.154 0.846 4 C 0.287 3.713 5 O -0.445 6.445 6 N -0.287 5.287 7 C -0.082 4.082 8 C -0.119 4.119 9 C -0.204 4.204 10 C 0.070 3.930 11 C -0.525 4.525 12 H 0.098 0.902 13 C -0.184 4.184 14 N -0.454 5.454 15 Si 0.803 3.197 16 H -0.190 1.190 17 H -0.195 1.195 18 H -0.177 1.177 19 C -0.245 4.245 20 C -0.118 4.118 21 C -0.079 4.079 22 C -0.082 4.082 23 C -0.143 4.143 24 C -0.084 4.084 25 C -0.052 4.052 26 C -0.031 4.031 27 N -0.143 5.143 28 C -0.080 4.080 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.256 0.744 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.126 0.874 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.279 8.074 14.451 18.083 hybrid contribution 0.362 -0.638 -1.062 1.291 sum -6.917 7.436 13.389 16.805 Atomic orbital electron populations 1.21841 0.89766 1.03175 1.04783 1.20329 0.99329 1.00792 0.87541 0.84596 1.21324 0.80147 0.84531 0.85280 1.90731 1.38459 1.28482 1.86850 1.42850 1.56729 1.25615 1.03541 1.17216 0.95700 1.06090 0.89231 1.20575 0.95727 0.98807 0.96774 1.20884 1.00387 1.03797 0.95318 1.18009 0.91025 0.90862 0.93140 1.19820 1.24002 1.13322 0.95343 0.90178 1.26821 0.95610 0.95568 1.00368 1.69940 1.28670 1.19237 1.27544 0.85189 0.78803 0.77648 0.78044 1.18973 1.19497 1.17704 1.20825 0.97247 1.06972 0.99463 1.20432 0.98149 1.00335 0.92886 1.19332 0.98652 0.94597 0.95287 1.21366 0.96949 0.93905 0.95986 1.21300 0.98001 1.01276 0.93689 1.21394 0.95453 0.91822 0.99765 1.15963 1.01173 0.94229 0.93792 1.25852 0.92361 0.92443 0.92447 1.81268 1.11559 1.09974 1.11463 1.21167 0.94501 1.00781 0.91510 0.90023 0.92873 0.88872 0.74433 0.88576 0.88959 0.90364 0.87396 0.84655 0.86395 0.83085 0.83119 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.91 71.98 0.64 -1.06 16 2 C -0.06 -1.02 2.90 -12.28 -0.04 -1.06 16 3 H 0.14 1.53 7.87 -2.39 -0.02 1.52 16 4 C 0.50 14.63 6.86 87.66 0.60 15.23 16 5 O -0.57 -22.73 12.54 -3.03 -0.04 -22.77 16 6 N -0.64 -18.77 5.15 -303.11 -1.56 -20.33 16 7 C 0.01 0.46 6.30 38.57 0.24 0.70 16 8 C -0.10 -4.89 8.61 22.13 0.19 -4.70 16 9 C -0.18 -10.14 8.63 22.48 0.19 -9.94 16 10 C 0.07 3.92 5.57 -21.28 -0.12 3.80 16 11 C -0.50 -26.81 9.03 23.39 0.21 -26.60 16 12 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 13 C 0.03 1.59 5.13 85.24 0.44 2.02 16 14 N -0.83 -45.19 10.98 21.82 0.24 -44.95 16 15 Si 0.98 38.85 29.60 68.60 2.03 40.88 16 16 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 17 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 19 C -0.23 -10.54 9.74 22.48 0.22 -10.32 16 20 C -0.10 -3.90 9.90 22.14 0.22 -3.68 16 21 C -0.08 -1.51 4.39 -19.90 -0.09 -1.60 16 22 C -0.06 -1.32 7.92 22.33 0.18 -1.14 16 23 C -0.12 -2.15 10.03 22.23 0.22 -1.93 16 24 C -0.06 -1.02 9.76 22.54 0.22 -0.80 16 25 C -0.05 -0.87 5.73 -21.36 -0.12 -0.99 16 26 C 0.28 6.01 15.33 88.33 1.35 7.37 16 27 N -0.47 -12.09 18.54 19.00 0.35 -11.74 16 28 C -0.06 -1.02 9.38 22.54 0.21 -0.81 16 29 H 0.08 0.78 7.69 -2.39 -0.02 0.77 16 30 H 0.05 0.81 7.38 -2.39 -0.02 0.79 16 31 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.42 8.26 8.40 -92.71 -0.78 7.48 16 33 H 0.10 4.87 6.24 -2.91 -0.02 4.86 16 34 H 0.09 5.45 6.19 -2.91 -0.02 5.43 16 35 H 0.29 14.20 8.30 -92.70 -0.77 13.43 16 36 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 37 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 38 H 0.12 2.70 7.50 -2.91 -0.02 2.68 16 39 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 41 H 0.15 1.91 7.94 -2.91 -0.02 1.89 16 Total: -1.00 -72.38 358.04 6.10 -66.28 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.30 Total: 28.14 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.78 Total: -35.52 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -0.97 Total: -77.02 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.04 Total: -22.77 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -72.38 6.10 -66.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359894566.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.587 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds