Wall clock time and date at job start Tue Mar 31 2020 12:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21843 * 120.00110 * 0.27998 * 6 5 4 8 8 N 1.33837 * 120.00178 * 180.27958 * 6 5 4 9 9 C 1.32929 * 119.99912 * 180.02562 * 8 6 5 10 10 C 1.41207 * 126.38413 * 0.02562 * 9 8 6 11 11 C 1.34948 * 108.24603 * 180.02562 * 10 9 8 12 12 N 1.36449 * 108.95169 * 359.97438 * 11 10 9 13 13 C 1.46502 * 125.85540 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46695 * 84.97989 * 13 12 11 15 15 H 1.08001 * 120.00153 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99997 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99529 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47045 * 90.00155 * 18 16 14 20 20 H 1.48498 * 109.46774 * 209.99884 * 18 16 14 21 21 H 1.48496 * 109.47007 * 329.99750 * 18 16 14 22 22 N 1.37422 * 126.37401 * 179.71585 * 9 8 6 23 23 H 0.96999 * 126.36634 * 359.97075 * 22 9 8 24 24 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 25 25 F 1.39899 * 109.47143 * 179.97438 * 24 2 1 26 26 F 1.39895 * 109.47638 * 300.00393 * 24 2 1 27 27 F 1.39904 * 109.46735 * 60.00533 * 24 2 1 28 28 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 30 30 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08001 * 125.87524 * 359.97050 * 10 9 8 35 35 H 1.08001 * 125.52784 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47077 * 204.97747 * 13 12 11 37 37 H 1.08996 * 109.47479 * 324.98410 * 13 12 11 38 38 H 0.97003 * 119.99760 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0008 -0.4106 -3.6656 7 8 2.6337 -1.4455 -3.7794 8 7 1.6515 0.2834 -4.7553 9 6 1.9947 -0.1566 -5.9618 10 6 2.7226 -1.3321 -6.2489 11 6 2.8651 -1.4244 -7.5877 12 7 2.2560 -0.3529 -8.1731 13 6 2.1880 -0.0848 -9.6118 14 6 1.0194 -0.8278 -10.2064 15 1 0.3901 -1.4382 -9.5757 16 6 0.7530 -0.7274 -11.5556 17 7 1.5184 0.0171 -12.3233 18 14 -0.6959 -1.6477 -12.2925 19 1 -1.9056 -0.7879 -12.2426 20 1 -0.3944 -1.9966 -13.7041 21 1 -0.9394 -2.8903 -11.5167 22 7 1.7021 0.4447 -7.1623 23 1 1.2063 1.2691 -7.2869 24 6 2.0400 -0.7211 1.2494 25 9 3.4390 -0.7216 1.2491 26 9 1.5737 -0.0616 2.3916 27 9 1.5737 -2.0401 1.2494 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 3.1009 -2.0357 -5.5221 35 1 3.3782 -2.2177 -8.1110 36 1 2.0601 0.9851 -9.7764 37 1 3.1103 -0.4180 -10.0875 38 1 1.3313 0.0875 -13.2725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360027825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:41 Heat of formation + Delta-G solvation = -90.413683 kcal Electronic energy + Delta-G solvation = -26034.380823 eV Core-core repulsion = 21499.572904 eV Total energy + Delta-G solvation = -4534.807919 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.36126 -47.85309 -47.80435 -40.80410 -39.03839 -36.47885 -34.25876 -32.95964 -32.60812 -31.06007 -30.57483 -27.26635 -26.73305 -25.63742 -23.23255 -21.91227 -21.33886 -21.10131 -19.95238 -18.72538 -18.63552 -17.80893 -17.17466 -16.90621 -16.17888 -15.61965 -15.52176 -14.94293 -14.86230 -14.77599 -14.42189 -14.30847 -14.24476 -14.04298 -13.99252 -13.91353 -13.72722 -13.35905 -13.06984 -12.96613 -12.72389 -12.52038 -11.98537 -11.85702 -11.59496 -11.57547 -11.35493 -11.07807 -10.54888 -10.42312 -9.79181 -9.58847 -9.05347 -8.93219 -8.72991 -8.41517 -6.92508 -6.49961 -4.66683 1.76030 2.04725 2.42610 3.04791 3.11865 3.13384 3.17600 3.30345 3.60588 3.74892 3.89817 4.05762 4.42809 4.45618 4.52169 4.64125 4.75760 4.80416 5.26019 5.27698 5.33270 5.55763 5.60784 5.77067 5.79357 5.96898 6.18552 6.51347 6.54785 6.67051 6.94890 7.31993 7.38173 7.50388 7.60218 7.82107 8.22206 8.37972 8.43984 9.03976 9.55031 10.51480 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.034112 B = 0.002044 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.621664 B =13697.977883 C =13924.603207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 H 0.121 0.879 4 C 0.144 3.856 5 N -0.728 5.728 6 C 0.686 3.314 7 O -0.629 6.629 8 N -0.713 5.713 9 C 0.487 3.513 10 C -0.334 4.334 11 C 0.162 3.838 12 N -0.345 5.345 13 C 0.255 3.745 14 C -0.558 4.558 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.887 5.887 18 Si 0.910 3.090 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.270 1.270 22 N -0.470 5.470 23 H 0.444 0.556 24 C 0.460 3.540 25 F -0.181 7.181 26 F -0.183 7.183 27 F -0.179 7.179 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.398 0.602 34 H 0.183 0.817 35 H 0.187 0.813 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 1.560 19.058 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 H 0.139 0.861 4 C 0.018 3.982 5 N -0.384 5.384 6 C 0.385 3.615 7 O -0.511 6.511 8 N -0.478 5.478 9 C 0.233 3.767 10 C -0.366 4.366 11 C 0.017 3.983 12 N -0.131 5.131 13 C 0.139 3.861 14 C -0.596 4.596 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.194 1.194 22 N -0.193 5.193 23 H 0.291 0.709 24 C 0.405 3.595 25 F -0.162 7.162 26 F -0.164 7.164 27 F -0.161 7.161 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.232 0.768 34 H 0.200 0.800 35 H 0.204 0.796 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.286 1.732 18.641 18.723 hybrid contribution -0.819 -0.276 -0.376 0.943 sum -0.533 1.456 18.265 18.330 Atomic orbital electron populations 1.21897 0.90938 1.04251 1.04021 1.22665 1.00254 1.02216 0.91771 0.86141 1.20954 1.00431 0.95089 0.81736 1.44492 1.61779 1.28510 1.03629 1.16556 0.79018 0.82540 0.83349 1.90750 1.45948 1.27536 1.86874 1.68012 1.44689 1.40377 0.94765 1.18683 0.85861 0.87104 0.85019 1.22389 1.15137 1.03974 0.95144 1.22814 0.92460 0.88982 0.94013 1.48006 1.45380 1.16948 1.02764 1.20047 0.99995 0.99286 0.66821 1.21421 1.13177 1.31110 0.93911 0.91220 1.24961 0.97056 0.94985 0.96548 1.69898 1.38057 1.37862 1.06514 0.86289 0.81572 0.80110 0.78419 1.20218 1.20682 1.19424 1.44444 1.52509 1.23137 0.99209 0.70868 1.20364 0.75554 0.77806 0.85744 1.93204 1.29868 1.96405 1.96760 1.93177 1.88496 1.80774 1.53982 1.93194 1.88401 1.37709 1.96775 0.90912 0.91122 0.89820 0.90734 0.90892 0.76800 0.79977 0.79597 0.93100 0.91375 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.82 37.16 0.33 -0.78 16 2 C -0.15 -1.23 2.40 -90.62 -0.22 -1.45 16 3 H 0.12 0.80 8.14 -51.92 -0.42 0.38 16 4 C 0.14 1.69 4.82 -4.04 -0.02 1.67 16 5 N -0.73 -10.13 5.29 -65.43 -0.35 -10.48 16 6 C 0.69 12.91 8.47 -87.75 -0.74 12.16 16 7 O -0.63 -13.38 13.26 5.06 0.07 -13.31 16 8 N -0.71 -13.60 10.59 -15.79 -0.17 -13.76 16 9 C 0.49 9.26 8.07 -155.29 -1.25 8.01 16 10 C -0.33 -6.16 9.52 -39.62 -0.38 -6.53 16 11 C 0.16 2.71 11.45 -16.67 -0.19 2.52 16 12 N -0.35 -6.30 3.63 -62.25 -0.23 -6.53 16 13 C 0.25 5.23 6.19 -5.19 -0.03 5.20 16 14 C -0.56 -13.12 9.39 -34.44 -0.32 -13.45 16 15 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -22.33 13.29 55.43 0.74 -21.60 16 18 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 N -0.47 -8.22 7.38 31.33 0.23 -7.99 16 23 H 0.44 6.81 8.96 -182.55 -1.64 5.17 16 24 C 0.46 4.29 2.69 37.16 0.10 4.39 16 25 F -0.18 -1.89 16.71 2.25 0.04 -1.86 16 26 F -0.18 -1.69 16.80 2.25 0.04 -1.65 16 27 F -0.18 -1.86 16.37 2.25 0.04 -1.82 16 28 H 0.07 0.56 7.80 -51.93 -0.41 0.16 16 29 H 0.07 0.43 7.80 -51.93 -0.41 0.02 16 30 H 0.08 0.58 7.18 -51.93 -0.37 0.21 16 31 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 32 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 33 H 0.40 4.63 7.76 -40.82 -0.32 4.31 16 34 H 0.18 3.56 5.77 -52.49 -0.30 3.26 16 35 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -29.10 340.95 -7.79 -36.89 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.49 Total: 9.56 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: -2.83 Total: 13.33 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.23 Total: -60.36 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.11 Total: -5.33 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.10 -7.79 -36.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360027825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.529 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds