Wall clock time and date at job start Tue Mar 31 2020 12:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21843 * 120.00110 * 0.27998 * 6 5 4 8 8 N 1.33837 * 120.00178 * 180.27958 * 6 5 4 9 9 C 1.32929 * 119.99912 * 180.02562 * 8 6 5 10 10 C 1.41207 * 126.38413 * 0.02562 * 9 8 6 11 11 C 1.34948 * 108.24603 * 180.02562 * 10 9 8 12 12 N 1.36449 * 108.95169 * 359.97438 * 11 10 9 13 13 C 1.46502 * 125.85540 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46695 * 84.97989 * 13 12 11 15 15 H 1.08001 * 120.00153 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99997 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99529 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47045 * 90.00155 * 18 16 14 20 20 H 1.48498 * 109.46774 * 209.99884 * 18 16 14 21 21 H 1.48496 * 109.47007 * 329.99750 * 18 16 14 22 22 N 1.37422 * 126.37401 * 179.71585 * 9 8 6 23 23 H 0.96999 * 126.36634 * 359.97075 * 22 9 8 24 24 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 25 25 F 1.39899 * 109.47143 * 179.97438 * 24 2 1 26 26 F 1.39895 * 109.47638 * 300.00393 * 24 2 1 27 27 F 1.39904 * 109.46735 * 60.00533 * 24 2 1 28 28 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 30 30 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 31 31 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 32 32 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08001 * 125.87524 * 359.97050 * 10 9 8 35 35 H 1.08001 * 125.52784 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47077 * 204.97747 * 13 12 11 37 37 H 1.08996 * 109.47479 * 324.98410 * 13 12 11 38 38 H 0.97003 * 119.99760 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0008 -0.4106 -3.6656 7 8 2.6337 -1.4455 -3.7794 8 7 1.6515 0.2834 -4.7553 9 6 1.9947 -0.1566 -5.9618 10 6 2.7226 -1.3321 -6.2489 11 6 2.8651 -1.4244 -7.5877 12 7 2.2560 -0.3529 -8.1731 13 6 2.1880 -0.0848 -9.6118 14 6 1.0194 -0.8278 -10.2064 15 1 0.3901 -1.4382 -9.5757 16 6 0.7530 -0.7274 -11.5556 17 7 1.5184 0.0171 -12.3233 18 14 -0.6959 -1.6477 -12.2925 19 1 -1.9056 -0.7879 -12.2426 20 1 -0.3944 -1.9966 -13.7041 21 1 -0.9394 -2.8903 -11.5167 22 7 1.7021 0.4447 -7.1623 23 1 1.2063 1.2691 -7.2869 24 6 2.0400 -0.7211 1.2494 25 9 3.4390 -0.7216 1.2491 26 9 1.5737 -0.0616 2.3916 27 9 1.5737 -2.0401 1.2494 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 3.1263 -0.7995 -1.2055 33 1 1.1488 0.8593 -2.3518 34 1 3.1009 -2.0357 -5.5221 35 1 3.3782 -2.2177 -8.1110 36 1 2.0601 0.9851 -9.7764 37 1 3.1103 -0.4180 -10.0875 38 1 1.3313 0.0875 -13.2725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360027825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:39 Heat of formation + Delta-G solvation = -108.923612 kcal Electronic energy + Delta-G solvation = -26035.183474 eV Core-core repulsion = 21499.572904 eV Total energy + Delta-G solvation = -4535.610570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.13716 -48.62057 -48.60037 -42.24176 -40.38951 -37.50036 -35.87951 -34.57934 -33.72846 -32.47533 -32.13193 -28.57732 -27.74172 -26.69802 -24.84646 -23.20355 -22.66441 -22.07553 -21.29413 -19.52605 -19.45125 -19.06637 -18.70661 -18.17309 -17.50962 -16.94530 -16.66670 -16.53366 -16.10835 -15.81298 -15.57225 -15.45533 -15.24797 -15.03226 -14.86710 -14.73648 -14.72533 -14.59348 -14.29534 -14.19955 -13.89897 -13.77098 -13.63355 -13.08070 -12.73807 -12.67380 -12.33806 -12.29247 -12.25726 -12.04963 -11.26736 -11.19551 -10.75991 -10.48241 -9.97540 -9.91971 -8.53312 -8.19076 -6.54044 0.33272 0.62434 1.39135 1.43642 1.52040 1.62786 1.69991 2.27440 2.33578 2.80077 2.91140 2.97082 3.02159 3.14711 3.16331 3.66558 3.81587 3.95243 4.08920 4.32792 4.48220 4.57452 4.60561 4.73237 4.77977 4.88906 4.89453 5.01274 5.19490 5.27453 5.53062 5.67436 5.73032 5.97407 6.15587 6.37698 6.61655 6.91902 6.99213 7.19757 8.12516 8.67938 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.034112 B = 0.002044 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.621664 B =13697.977883 C =13924.603207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 H 0.144 0.856 4 C 0.144 3.856 5 N -0.712 5.712 6 C 0.673 3.327 7 O -0.660 6.660 8 N -0.719 5.719 9 C 0.472 3.528 10 C -0.346 4.346 11 C 0.177 3.823 12 N -0.351 5.351 13 C 0.268 3.732 14 C -0.564 4.564 15 H 0.059 0.941 16 C 0.029 3.971 17 N -0.913 5.913 18 Si 0.963 3.037 19 H -0.277 1.277 20 H -0.278 1.278 21 H -0.270 1.270 22 N -0.465 5.465 23 H 0.452 0.548 24 C 0.461 3.539 25 F -0.189 7.189 26 F -0.179 7.179 27 F -0.187 7.187 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.410 0.590 34 H 0.172 0.828 35 H 0.222 0.778 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.314 1.837 19.518 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 H 0.161 0.839 4 C 0.019 3.981 5 N -0.368 5.368 6 C 0.371 3.629 7 O -0.545 6.545 8 N -0.484 5.484 9 C 0.218 3.782 10 C -0.379 4.379 11 C 0.032 3.968 12 N -0.136 5.136 13 C 0.151 3.849 14 C -0.603 4.603 15 H 0.078 0.922 16 C -0.173 4.173 17 N -0.551 5.551 18 Si 0.788 3.212 19 H -0.202 1.202 20 H -0.204 1.204 21 H -0.195 1.195 22 N -0.189 5.189 23 H 0.301 0.699 24 C 0.406 3.594 25 F -0.170 7.170 26 F -0.161 7.161 27 F -0.169 7.169 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.247 0.753 34 H 0.189 0.811 35 H 0.238 0.762 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.340 2.037 19.142 19.253 hybrid contribution -0.616 -0.362 -0.444 0.841 sum -0.956 1.675 18.698 18.797 Atomic orbital electron populations 1.21921 0.89795 1.04166 1.05087 1.22594 1.01017 1.02612 0.89306 0.83851 1.20970 0.99840 0.94919 0.82368 1.44365 1.60808 1.28786 1.02793 1.16911 0.79075 0.82370 0.84503 1.90728 1.47402 1.28824 1.87498 1.68079 1.44873 1.40498 0.94951 1.18905 0.86246 0.87639 0.85376 1.22295 1.15882 1.03984 0.95724 1.23325 0.91185 0.88759 0.93498 1.47854 1.45825 1.17572 1.02372 1.19728 0.99052 0.98378 0.67762 1.21620 1.13760 1.30900 0.93987 0.92229 1.25596 0.98974 0.95670 0.97050 1.69961 1.39344 1.39025 1.06767 0.85464 0.79051 0.78933 0.77744 1.20231 1.20357 1.19481 1.44405 1.52520 1.23318 0.98619 0.69923 1.20473 0.75167 0.77555 0.86173 1.93192 1.30592 1.96416 1.96816 1.93184 1.88399 1.80628 1.53845 1.93183 1.88440 1.38407 1.96830 0.91629 0.89403 0.89378 0.91938 0.91988 0.75295 0.81055 0.76165 0.93806 0.91107 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.82 71.98 0.64 -1.25 16 2 C -0.14 -2.01 2.40 -10.79 -0.03 -2.03 16 3 H 0.14 1.52 8.14 -2.38 -0.02 1.50 16 4 C 0.14 3.30 4.82 86.38 0.42 3.71 16 5 N -0.71 -19.18 5.29 -479.06 -2.53 -21.71 16 6 C 0.67 25.15 8.47 179.35 1.52 26.67 16 7 O -0.66 -28.35 13.26 -4.81 -0.06 -28.41 16 8 N -0.72 -27.08 10.59 -322.54 -3.42 -30.50 16 9 C 0.47 17.74 8.07 133.95 1.08 18.83 16 10 C -0.35 -12.62 9.52 22.24 0.21 -12.41 16 11 C 0.18 5.65 11.45 83.22 0.95 6.60 16 12 N -0.35 -12.40 3.63 -350.85 -1.28 -13.67 16 13 C 0.27 10.74 6.19 85.63 0.53 11.27 16 14 C -0.56 -25.98 9.39 25.60 0.24 -25.74 16 15 H 0.06 2.83 7.81 -2.91 -0.02 2.81 16 16 C 0.03 1.39 5.46 84.66 0.46 1.85 16 17 N -0.91 -45.34 13.29 21.45 0.28 -45.05 16 18 Si 0.96 38.42 29.54 68.60 2.03 40.44 16 19 H -0.28 -10.97 7.11 99.48 0.71 -10.27 16 20 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 N -0.46 -15.89 7.38 -54.79 -0.40 -16.30 16 23 H 0.45 13.53 8.96 -213.28 -1.91 11.62 16 24 C 0.46 8.00 2.69 71.98 0.19 8.19 16 25 F -0.19 -3.78 16.71 44.97 0.75 -3.03 16 26 F -0.18 -2.98 16.80 44.97 0.76 -2.22 16 27 F -0.19 -3.75 16.37 44.97 0.74 -3.01 16 28 H 0.06 0.92 7.80 -2.39 -0.02 0.91 16 29 H 0.09 0.82 7.80 -2.39 -0.02 0.80 16 30 H 0.09 1.03 7.18 -2.39 -0.02 1.01 16 31 H 0.06 1.60 7.94 -2.38 -0.02 1.58 16 32 H 0.06 1.58 7.66 -2.39 -0.02 1.56 16 33 H 0.41 8.88 7.76 -92.71 -0.72 8.16 16 34 H 0.17 6.75 5.77 -2.91 -0.02 6.73 16 35 H 0.22 5.27 8.06 -2.91 -0.02 5.25 16 36 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 Total: -1.00 -61.08 340.95 1.59 -59.50 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -1.49 Total: 28.27 kcal Atomic # 6 Polarization: 29.49 SS G_CDS: 6.22 Total: 35.70 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -7.34 Total: -127.23 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.06 Total: -28.41 kcal Atomic # 9 Polarization: -10.51 SS G_CDS: 2.24 Total: -8.26 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.44 kcal Total: -61.08 1.59 -59.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360027825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.428 kcal (2) G-P(sol) polarization free energy of solvation -61.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds