Wall clock time and date at job start Tue Mar 31 2020 12:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47152 * 2 1 4 4 C 1.52994 * 109.47247 * 120.00414 * 2 1 3 5 5 N 1.46501 * 109.46933 * 294.99457 * 4 2 1 6 6 C 1.34779 * 120.00032 * 180.02562 * 5 4 2 7 7 O 1.21840 * 120.00106 * 0.02562 * 6 5 4 8 8 N 1.33828 * 120.00127 * 179.97438 * 6 5 4 9 9 C 1.32938 * 120.00285 * 180.02562 * 8 6 5 10 10 C 1.41205 * 126.37378 * 0.02562 * 9 8 6 11 11 C 1.34964 * 108.24132 * 179.97438 * 10 9 8 12 12 N 1.36453 * 108.94829 * 0.02562 * 11 10 9 13 13 C 1.46495 * 125.85252 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47426 * 85.02220 * 13 12 11 15 15 H 1.08001 * 119.99569 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00060 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99918 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00042 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46760 * 90.00054 * 18 16 14 20 20 H 1.48495 * 109.47204 * 210.00296 * 18 16 14 21 21 H 1.48496 * 109.47071 * 330.00513 * 18 16 14 22 22 N 1.37418 * 126.38338 * 180.02562 * 9 8 6 23 23 H 0.97004 * 126.35846 * 359.97438 * 22 9 8 24 24 C 1.53007 * 109.46560 * 240.00022 * 2 1 3 25 25 F 1.39899 * 109.47177 * 300.00035 * 24 2 1 26 26 F 1.39900 * 109.47220 * 60.00316 * 24 2 1 27 27 F 1.39902 * 109.46841 * 179.97438 * 24 2 1 28 28 H 1.09000 * 109.46566 * 299.99964 * 1 2 3 29 29 H 1.09003 * 109.47163 * 59.99353 * 1 2 3 30 30 H 1.08994 * 109.47496 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47334 * 174.99910 * 4 2 1 32 32 H 1.09001 * 109.47756 * 54.99472 * 4 2 1 33 33 H 0.96995 * 119.99995 * 0.02562 * 5 4 2 34 34 H 1.08002 * 125.88050 * 359.96219 * 10 9 8 35 35 H 1.07999 * 125.52317 * 179.74257 * 11 10 9 36 36 H 1.08997 * 109.46982 * 205.02317 * 13 12 11 37 37 H 1.09004 * 109.47194 * 325.01878 * 13 12 11 38 38 H 0.97007 * 120.00218 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 1.6526 0.0353 2.4423 6 6 1.9966 -0.4131 3.6658 7 8 2.6303 -1.4476 3.7796 8 7 1.6431 0.2783 4.7558 9 6 1.9829 -0.1638 5.9626 10 6 2.7119 -1.3385 6.2495 11 6 2.8499 -1.4336 7.5887 12 7 2.2367 -0.3645 8.1743 13 6 2.1623 -0.1004 9.6134 14 6 3.4094 0.6199 10.0571 15 1 4.1801 0.8576 9.3389 16 6 3.5659 0.9765 11.3798 17 7 2.6270 0.6875 12.2542 18 14 5.1120 1.8687 11.9300 19 1 4.9040 3.3347 11.8173 20 1 5.4101 1.5180 13.3418 21 1 6.2510 1.4628 11.0680 22 7 1.6901 0.4374 7.1631 23 1 1.1972 1.2635 7.2875 24 6 2.0399 -0.7213 -1.2493 25 9 1.5735 -2.0403 -1.2493 26 9 1.5736 -0.0618 -2.3916 27 9 3.4389 -0.7208 -1.2497 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1264 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2951 33 1 1.1485 0.8590 2.3517 34 1 3.0932 -2.0403 5.5225 35 1 3.3589 -2.2294 8.1122 36 1 1.2905 0.5188 9.8244 37 1 2.0766 -1.0441 10.1521 38 1 2.7373 0.9380 13.1848 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360027826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:46 Heat of formation + Delta-G solvation = -90.399946 kcal Electronic energy + Delta-G solvation = -26030.431975 eV Core-core repulsion = 21495.624651 eV Total energy + Delta-G solvation = -4534.807324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 320.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.36010 -47.84892 -47.80666 -40.80488 -39.03885 -36.48016 -34.25916 -32.95967 -32.60852 -31.06025 -30.57515 -27.26941 -26.73441 -25.63678 -23.23254 -21.91254 -21.33983 -21.10255 -19.95273 -18.72599 -18.63328 -17.80920 -17.17241 -16.90997 -16.17547 -15.61075 -15.53301 -14.93598 -14.89082 -14.75693 -14.44325 -14.27146 -14.20731 -14.09360 -13.99664 -13.92312 -13.71609 -13.35486 -13.08931 -12.96421 -12.69532 -12.54591 -11.98672 -11.84446 -11.60977 -11.57890 -11.35007 -11.07713 -10.54786 -10.42292 -9.79132 -9.58812 -9.05366 -8.93195 -8.72959 -8.41479 -6.92487 -6.49913 -4.66638 1.76114 2.04530 2.42665 3.04920 3.11922 3.13465 3.17732 3.30316 3.60552 3.75050 3.89744 4.05863 4.42674 4.45743 4.51944 4.64054 4.75819 4.80485 5.25960 5.27017 5.32516 5.55951 5.60510 5.76089 5.79252 5.96817 6.18507 6.51272 6.54689 6.67036 6.94882 7.31989 7.38231 7.50414 7.60191 7.82103 8.22221 8.38027 8.44028 9.04062 9.55080 10.51531 Molecular weight = 320.12amu Principal moments of inertia in cm(-1) A = 0.033978 B = 0.002035 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.871017 B =13753.469791 C =13914.208145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 H 0.121 0.879 4 C 0.144 3.856 5 N -0.728 5.728 6 C 0.686 3.314 7 O -0.629 6.629 8 N -0.713 5.713 9 C 0.487 3.513 10 C -0.334 4.334 11 C 0.162 3.838 12 N -0.345 5.345 13 C 0.255 3.745 14 C -0.558 4.558 15 H 0.070 0.930 16 C 0.070 3.930 17 N -0.887 5.887 18 Si 0.910 3.090 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.270 1.270 22 N -0.470 5.470 23 H 0.444 0.556 24 C 0.460 3.540 25 F -0.179 7.179 26 F -0.183 7.183 27 F -0.181 7.181 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.398 0.602 34 H 0.183 0.817 35 H 0.187 0.813 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.219 -1.172 -18.774 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 H 0.139 0.861 4 C 0.018 3.982 5 N -0.384 5.384 6 C 0.385 3.615 7 O -0.511 6.511 8 N -0.478 5.478 9 C 0.233 3.767 10 C -0.366 4.366 11 C 0.017 3.983 12 N -0.131 5.131 13 C 0.139 3.861 14 C -0.596 4.596 15 H 0.088 0.912 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.736 3.264 19 H -0.202 1.202 20 H -0.207 1.207 21 H -0.194 1.194 22 N -0.193 5.193 23 H 0.291 0.709 24 C 0.405 3.595 25 F -0.161 7.161 26 F -0.164 7.164 27 F -0.162 7.162 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.232 0.768 34 H 0.200 0.800 35 H 0.204 0.796 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.329 -1.064 -18.350 18.883 hybrid contribution 0.803 0.708 0.275 1.105 sum -3.526 -0.356 -18.075 18.419 Atomic orbital electron populations 1.21895 0.90955 1.04215 1.04015 1.22665 1.00236 1.02247 0.91775 0.86122 1.20955 1.00472 0.95046 0.81737 1.44492 1.61852 1.28458 1.03612 1.16553 0.79033 0.82521 0.83355 1.90749 1.45872 1.27598 1.86892 1.68010 1.44941 1.40183 0.94714 1.18683 0.85920 0.87063 0.85002 1.22394 1.14955 1.04181 0.95119 1.22818 0.91798 0.89566 0.94085 1.47999 1.46222 1.16110 1.02759 1.20046 0.99493 0.99750 0.66857 1.21418 1.03811 1.39757 0.94622 0.91219 1.24957 0.97389 0.95207 0.95988 1.69896 1.33341 1.45362 1.03740 0.86290 0.82200 0.79804 0.78103 1.20218 1.20681 1.19423 1.44444 1.52561 1.23026 0.99265 0.70870 1.20365 0.75570 0.77789 0.85743 1.93191 1.88392 1.37728 1.96777 1.93178 1.88506 1.80772 1.53983 1.93207 1.29848 1.96399 1.96760 0.89842 0.91116 0.90930 0.90879 0.90747 0.76803 0.79975 0.79597 0.93103 0.91385 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.82 37.16 0.33 -0.75 16 2 C -0.15 -1.23 2.40 -90.62 -0.22 -1.45 16 3 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 4 C 0.14 1.69 4.82 -4.04 -0.02 1.67 16 5 N -0.73 -10.13 5.29 -65.43 -0.35 -10.48 16 6 C 0.69 12.91 8.47 -87.76 -0.74 12.16 16 7 O -0.63 -13.38 13.26 5.06 0.07 -13.31 16 8 N -0.71 -13.60 10.59 -15.79 -0.17 -13.77 16 9 C 0.49 9.26 8.07 -155.29 -1.25 8.01 16 10 C -0.33 -6.16 9.52 -39.62 -0.38 -6.53 16 11 C 0.16 2.71 11.45 -16.66 -0.19 2.52 16 12 N -0.35 -6.30 3.63 -62.24 -0.23 -6.53 16 13 C 0.25 5.23 6.19 -5.19 -0.03 5.20 16 14 C -0.56 -13.13 9.39 -34.44 -0.32 -13.46 16 15 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -22.34 13.29 55.43 0.74 -21.60 16 18 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 N -0.47 -8.22 7.38 31.33 0.23 -7.99 16 23 H 0.44 6.80 8.96 -182.55 -1.64 5.16 16 24 C 0.46 4.30 2.69 37.16 0.10 4.39 16 25 F -0.18 -1.85 16.37 2.25 0.04 -1.81 16 26 F -0.18 -1.69 16.80 2.25 0.04 -1.65 16 27 F -0.18 -1.91 16.71 2.25 0.04 -1.88 16 28 H 0.08 0.57 7.18 -51.93 -0.37 0.19 16 29 H 0.07 0.42 7.80 -51.93 -0.41 0.01 16 30 H 0.07 0.55 7.80 -51.93 -0.41 0.14 16 31 H 0.07 0.95 7.67 -51.93 -0.40 0.55 16 32 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 33 H 0.40 4.63 7.75 -40.82 -0.32 4.31 16 34 H 0.18 3.56 5.77 -52.49 -0.30 3.26 16 35 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -29.12 340.96 -7.79 -36.91 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.49 Total: 9.50 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -2.83 Total: 13.35 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.23 Total: -60.37 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.11 Total: -5.34 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.12 -7.79 -36.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360027826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.489 kcal (2) G-P(sol) polarization free energy of solvation -29.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds