Wall clock time and date at job start Tue Mar 31 2020 12:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47082 * 2 1 4 4 C 1.50702 * 109.46969 * 239.99784 * 2 1 3 5 5 O 1.21278 * 119.99928 * 246.17056 * 4 2 1 6 6 N 1.34776 * 119.99804 * 66.16881 * 4 2 1 7 7 C 1.37138 * 120.00489 * 5.78794 * 6 4 2 8 8 H 1.08001 * 119.99410 * 25.10263 * 7 6 4 9 9 C 1.38883 * 120.00281 * 205.10743 * 7 6 4 10 10 N 1.31426 * 120.00199 * 5.74047 * 9 7 6 11 11 Si 1.86801 * 120.00126 * 185.74024 * 9 7 6 12 12 H 1.48499 * 109.46989 * 59.99731 * 11 9 7 13 13 H 1.48502 * 109.47087 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47168 * 299.99780 * 11 9 7 15 15 C 1.39788 * 119.99865 * 185.78530 * 6 4 2 16 16 C 1.38959 * 120.08139 * 245.18081 * 15 6 4 17 17 C 1.38086 * 119.92135 * 179.79268 * 16 15 6 18 18 C 1.38305 * 120.07901 * 0.45910 * 17 16 15 19 19 C 1.38309 * 120.15395 * 359.79335 * 18 17 16 20 20 C 1.38079 * 120.08229 * 359.97438 * 19 18 17 21 21 C 1.50702 * 109.46977 * 119.99973 * 2 1 3 22 22 C 1.38381 * 119.92478 * 59.99785 * 21 2 1 23 23 C 1.38340 * 120.30485 * 179.72147 * 22 21 2 24 24 C 1.37967 * 120.14966 * 359.97438 * 23 22 21 25 25 C 1.39613 * 119.84729 * 0.02562 * 24 23 22 26 26 C 1.43202 * 120.14991 * 179.97438 * 25 24 23 27 27 N 5.95822 * 123.11668 * 83.85161 * 2 1 3 28 28 C 1.37927 * 119.92228 * 239.72085 * 21 2 1 29 29 H 1.09000 * 109.47225 * 294.87817 * 1 2 3 30 30 H 1.08999 * 109.47359 * 54.88037 * 1 2 3 31 31 H 1.09000 * 109.47705 * 174.87747 * 1 2 3 32 32 H 0.96998 * 119.99865 * 184.99744 * 10 9 7 33 33 H 1.08001 * 120.03605 * 0.02562 * 16 15 6 34 34 H 1.07995 * 119.95701 * 180.22909 * 17 16 15 35 35 H 1.07999 * 119.91889 * 179.76352 * 18 17 16 36 36 H 1.08004 * 119.95754 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.04198 * 179.97438 * 20 19 18 38 38 H 1.07998 * 119.84626 * 359.74691 * 22 21 2 39 39 H 1.08003 * 119.92338 * 180.02562 * 23 22 21 40 40 H 1.08005 * 120.07250 * 180.02562 * 24 23 22 41 41 H 1.08005 * 120.07761 * 0.25612 * 28 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6345 -1.7576 -1.1227 6 7 1.8122 -0.1821 -2.4507 7 6 1.2375 1.0575 -2.5677 8 1 1.3255 1.7717 -1.7624 9 6 0.5421 1.3944 -3.7218 10 7 0.3377 0.4902 -4.6534 11 14 -0.1028 3.1327 -3.9499 12 1 1.0327 4.0893 -3.9229 13 1 -0.8035 3.2334 -5.2553 14 1 -1.0496 3.4573 -2.8529 15 6 2.1699 -0.8977 -3.5970 16 6 3.1676 -0.4159 -4.4357 17 6 3.5213 -1.1276 -5.5650 18 6 2.8774 -2.3138 -5.8667 19 6 1.8803 -2.7936 -5.0369 20 6 1.5247 -2.0897 -3.9035 21 6 2.0323 -0.7104 1.2305 22 6 1.6970 -2.0353 1.4480 23 6 2.1585 -2.6967 2.5719 24 6 2.9575 -2.0386 3.4840 25 6 3.2997 -0.7020 3.2709 26 6 4.1282 -0.0125 4.2136 27 7 4.7852 0.5345 4.9617 28 6 2.8299 -0.0403 2.1344 29 1 -0.3634 0.4323 0.9323 30 1 -0.3634 0.5912 -0.8406 31 1 -0.3634 -1.0235 -0.0918 32 1 -0.0835 0.7425 -5.4900 33 1 3.6684 0.5122 -4.2026 34 1 4.2992 -0.7556 -6.2152 35 1 3.1534 -2.8664 -6.7526 36 1 1.3792 -3.7201 -5.2758 37 1 0.7457 -2.4648 -3.2562 38 1 1.0724 -2.5553 0.7367 39 1 1.8933 -3.7309 2.7353 40 1 3.3175 -2.5564 4.3609 41 1 3.0911 0.9937 1.9633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361718222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:23 Heat of formation + Delta-G solvation = 54.112485 kcal Electronic energy + Delta-G solvation = -26056.175040 eV Core-core repulsion = 22480.340249 eV Total energy + Delta-G solvation = -3575.834791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.127 amu Computer time = 3.46 seconds Orbital eigenvalues (eV) -40.05279 -39.03542 -37.39587 -36.35288 -34.85062 -33.65701 -31.75514 -31.15594 -29.88881 -29.68905 -28.39970 -25.17451 -24.35184 -23.53794 -22.42768 -21.54893 -20.99748 -19.39125 -18.35761 -17.25017 -16.50652 -16.11751 -15.60556 -15.17442 -14.89326 -14.48802 -14.35033 -14.33586 -13.95283 -13.65008 -13.35226 -13.07128 -13.01948 -12.90621 -12.67369 -12.44993 -12.18896 -11.86373 -11.75725 -11.65427 -11.40612 -11.36860 -11.21832 -10.99792 -10.85075 -10.62150 -10.51440 -10.39240 -10.25453 -9.41701 -8.91912 -8.64577 -8.51510 -8.31287 -7.86539 -7.47866 -6.28875 -4.18822 0.93105 1.44624 2.45481 2.49161 2.67621 3.03401 3.04400 3.12738 3.13821 3.65697 3.87416 3.95820 4.01366 4.54012 4.79807 4.88304 4.95656 5.07504 5.17764 5.45173 5.49260 5.63125 5.75309 5.79178 5.80672 5.88478 5.98801 6.01266 6.09633 6.27659 6.34661 6.38993 6.42026 6.47604 6.54591 6.76086 6.82641 6.84916 6.96972 7.02983 7.23397 7.33536 7.45121 7.49637 7.57027 7.73204 7.96597 8.34720 8.89936 9.25534 9.67408 10.54271 Molecular weight = 320.13amu Principal moments of inertia in cm(-1) A = 0.013358 B = 0.004217 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.554224 B = 6638.695795 C = 7740.188320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 H 0.096 0.904 4 C 0.476 3.524 5 O -0.583 6.583 6 N -0.408 5.408 7 C -0.351 4.351 8 H 0.100 0.900 9 C 0.047 3.953 10 N -0.846 5.846 11 Si 0.917 3.083 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.270 1.270 15 C 0.246 3.754 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.154 4.154 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.054 4.054 22 C -0.044 4.044 23 C -0.126 4.126 24 C -0.077 4.077 25 C -0.044 4.044 26 C 0.265 3.735 27 N -0.435 5.435 28 C -0.066 4.066 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.273 0.727 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.058 -3.142 5.465 6.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.076 4.076 3 H 0.114 0.886 4 C 0.266 3.734 5 O -0.467 6.467 6 N -0.123 5.123 7 C -0.477 4.477 8 H 0.117 0.883 9 C -0.161 4.161 10 N -0.481 5.481 11 Si 0.744 3.256 12 H -0.198 1.198 13 H -0.208 1.208 14 H -0.196 1.196 15 C 0.154 3.846 16 C -0.140 4.140 17 C -0.137 4.137 18 C -0.172 4.172 19 C -0.136 4.136 20 C -0.110 4.110 21 C -0.054 4.054 22 C -0.063 4.063 23 C -0.144 4.144 24 C -0.098 4.098 25 C -0.047 4.047 26 C -0.050 4.050 27 N -0.111 5.111 28 C -0.086 4.086 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.084 -2.814 6.503 7.086 hybrid contribution -0.651 0.906 -0.808 1.378 sum -0.567 -1.908 5.695 6.032 Atomic orbital electron populations 1.21724 0.92079 1.02699 1.02907 1.20022 0.97903 0.99667 0.89984 0.88586 1.20038 0.83319 0.85679 0.84410 1.90603 1.44981 1.24625 1.86456 1.41234 1.52470 1.16491 1.02122 1.19477 1.32205 0.90133 1.05869 0.88280 1.25314 0.95394 0.98982 0.96416 1.69839 1.39402 1.32403 1.06452 0.86143 0.79233 0.82225 0.78046 1.19842 1.20791 1.19558 1.17170 0.90655 0.89849 0.86919 1.20870 0.97726 0.99634 0.95751 1.20665 1.00176 0.95721 0.97127 1.20697 0.99171 0.97479 0.99864 1.20662 0.98247 0.99309 0.95355 1.20712 0.98152 0.95564 0.96542 1.19547 0.96528 0.94408 0.94939 1.21265 0.96410 0.93516 0.95124 1.21037 0.98712 1.00164 0.94515 1.21047 0.97109 0.92269 0.99348 1.15877 1.01074 0.93811 0.93970 1.25805 0.93006 0.93171 0.92974 1.81210 1.10525 1.08862 1.10457 1.21035 0.95614 0.99891 0.92106 0.92842 0.89182 0.92936 0.91541 0.87479 0.87758 0.87903 0.87708 0.87926 0.85258 0.85265 0.85584 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.70 37.16 0.32 -1.78 16 2 C -0.05 -0.92 2.10 -92.92 -0.20 -1.11 16 3 H 0.10 1.53 6.86 -51.93 -0.36 1.18 16 4 C 0.48 10.11 6.69 -10.98 -0.07 10.04 16 5 O -0.58 -13.61 14.59 5.56 0.08 -13.53 16 6 N -0.41 -9.31 2.69 -58.98 -0.16 -9.47 16 7 C -0.35 -7.84 7.10 -14.94 -0.11 -7.95 16 8 H 0.10 2.06 6.37 -52.49 -0.33 1.72 16 9 C 0.05 1.08 5.24 -17.49 -0.09 0.99 16 10 N -0.85 -20.56 10.59 55.49 0.59 -19.97 16 11 Si 0.92 18.01 29.56 -169.99 -5.02 12.99 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 13 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 14 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 15 C 0.25 5.73 2.59 -83.69 -0.22 5.51 16 16 C -0.12 -2.67 9.25 -39.37 -0.36 -3.03 16 17 C -0.12 -2.33 10.04 -39.61 -0.40 -2.73 16 18 C -0.15 -2.90 10.04 -39.53 -0.40 -3.29 16 19 C -0.12 -2.32 10.04 -39.61 -0.40 -2.72 16 20 C -0.09 -2.02 8.89 -39.37 -0.35 -2.37 16 21 C -0.05 -0.81 4.45 -104.68 -0.47 -1.27 16 22 C -0.04 -0.63 7.91 -39.49 -0.31 -0.94 16 23 C -0.13 -1.47 10.03 -39.64 -0.40 -1.87 16 24 C -0.08 -0.87 9.76 -39.17 -0.38 -1.25 16 25 C -0.04 -0.56 5.73 -106.93 -0.61 -1.17 16 26 C 0.27 3.60 15.33 -22.47 -0.34 3.26 16 27 N -0.44 -6.67 18.54 41.83 0.78 -5.89 16 28 C -0.07 -0.89 9.38 -39.17 -0.37 -1.26 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.56 6.32 -51.93 -0.33 1.23 16 31 H 0.05 0.80 7.56 -51.93 -0.39 0.41 16 32 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 33 H 0.11 2.36 8.06 -52.49 -0.42 1.93 16 34 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.10 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 38 H 0.13 1.91 7.42 -52.49 -0.39 1.52 16 39 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 40 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.13 1.57 7.94 -52.48 -0.42 1.15 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -27.45 355.89 -8.26 -35.71 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -4.74 Total: 7.74 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -5.15 Total: -12.94 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 1.20 Total: -35.33 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.45 -8.26 -35.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.827 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.46 seconds